mRNA_Ecto-sp13_S_contig100972.128.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100972.128.1
Unique NamemRNA_Ecto-sp13_S_contig100972.128.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Match: UPI0014245902 (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014245902)

HSP 1 Score: 213 bits (543), Expect = 6.140e-70
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 TSLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLISIFEHKGLTCRRLQHDIRVDKVADTFRYIFDRCKTASGEWKLL 321
            TSLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLI+IFEHKGLTCRRLQHDIRV+KVADTFRYIFDRCKTASGEWKLL
Sbjct:   16 TSLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLINIFEHKGLTCRRLQHDIRVEKVADTFRYIFDRCKTASGEWKLL 122
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BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Match: A0A7C7PZN4_9PROT (Uncharacterized protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PZN4_9PROT)

HSP 1 Score: 182 bits (461), Expect = 2.230e-57
Identity = 85/105 (80.95%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    7 LALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLISIFEHKGLTCRRLQHDIRVDKVADTFRYIFDRCKTASGEWKLL 321
            LALPAQAQLNPFKRSGFEL+ EDI +L+ A ARLY+GE AEVGTVETWSN ASGNTGAVQL+ IFEH+GLTCRRLQHDI+++ V +TFRYIFDRCKTA+GEWKLL
Sbjct:   22 LALPAQAQLNPFKRSGFELTPEDIQMLQTAAARLYQGEAAEVGTVETWSNAASGNTGAVQLVQIFEHQGLTCRRLQHDIKINDVENTFRYIFDRCKTAAGEWKLL 126
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BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Match: UPI0018732B05 (hypothetical protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018732B05)

HSP 1 Score: 154 bits (389), Expect = 1.840e-46
Identity = 73/106 (68.87%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    4 SLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLISIFEHKGLTCRRLQHDIRVDKVADTFRYIFDRCKTASGEWKLL 321
            +L  P QAQLNPF R+GFELS EDI +++ A  +LY  E+  VGTVETWSN  SGNTG+VQLI  FEHKGL CRRLQHDI+V  VA+ FRYIFDRCK  SGEWKLL
Sbjct:   17 ALGAPVQAQLNPFTRAGFELSPEDIEMVKGAAQKLYIDESVPVGTVETWSNPKSGNTGSVQLIGTFEHKGLPCRRLQHDIKVKDVANPFRYIFDRCKVPSGEWKLL 122
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BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Match: A0A8J7SYY7_9PROT (Uncharacterized protein n=1 Tax=Candidatus Odyssella sp. TaxID=2589116 RepID=A0A8J7SYY7_9PROT)

HSP 1 Score: 105 bits (262), Expect = 1.010e-26
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   10 ALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETWSNEASGNTGAVQLISIFEHKGLTCRRLQHDIRVDKVADTFRYIFDRCKTASGEWKL 318
            A  A AQ++PF+R+G  LS ED+ALL AAG++LY  +  +VG +E WSN  SGN G + LI+++    + CRR+ H I      D +    DRC+T +GEWK+
Sbjct:   53 AAEAAAQVSPFRRAGLNLSKEDLALLEAAGSKLYASDAPKVGAIENWSNAKSGNAGTIVLIAVYSWNNMPCRRMSHQITSAARKDPYSVQIDRCRTPAGEWKI 155
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100972.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI00142459026.140e-7098.13hypothetical protein n=1 Tax=Pelagibius litoralis ... [more]
A0A7C7PZN4_9PROT2.230e-5780.95Uncharacterized protein n=1 Tax=Kiloniellaceae bac... [more]
UPI0018732B051.840e-4668.87hypothetical protein n=1 Tax=Pelagibius sp. NBU259... [more]
A0A8J7SYY7_9PROT1.010e-2644.66Uncharacterized protein n=1 Tax=Candidatus Odyssel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100972contigEcto-sp13_S_contig100972:185..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size324
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462507.5094452-CDS-Ecto-sp13_S_contig100972:184..5081681462507.5094452-CDS-Ecto-sp13_S_contig100972:184..508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100972 185..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100972.128.1prot_Ecto-sp13_S_contig100972.128.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100972 185..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100972.128.1

>prot_Ecto-sp13_S_contig100972.128.1 ID=prot_Ecto-sp13_S_contig100972.128.1|Name=mRNA_Ecto-sp13_S_contig100972.128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
TSLALPAQAQLNPFKRSGFELSSEDIALLRAAGARLYEGETAEVGTVETW
SNEASGNTGAVQLISIFEHKGLTCRRLQHDIRVDKVADTFRYIFDRCKTA
SGEWKLL*
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mRNA from alignment at Ecto-sp13_S_contig100972:185..508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100972.128.1 ID=mRNA_Ecto-sp13_S_contig100972.128.1|Name=mRNA_Ecto-sp13_S_contig100972.128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100972:185..508- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGCCTGGCGCTGCCGGCTCAGGCGCAACTCAATCCTTTCAAGCGCTC
GGGCTTTGAGCTGTCGTCTGAGGACATCGCCCTGCTGCGCGCGGCCGGGG
CCCGGCTCTATGAGGGTGAGACGGCCGAAGTCGGCACTGTCGAGACCTGG
TCGAACGAGGCCAGCGGCAATACCGGCGCTGTCCAGTTGATCAGCATCTT
CGAGCACAAGGGGCTGACCTGCCGGCGCCTGCAGCACGATATCAGGGTCG
ATAAAGTGGCCGACACTTTTCGCTACATCTTCGACCGCTGCAAGACCGCT
TCGGGTGAGTGGAAGCTGCTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100972:185..508-

>mRNA_Ecto-sp13_S_contig100972.128.1 ID=mRNA_Ecto-sp13_S_contig100972.128.1|Name=mRNA_Ecto-sp13_S_contig100972.128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100972:185..508- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGCCTGGCGCTGCCGGCTCAGGCGCAACTCAATCCTTTCAAGCGCTC
GGGCTTTGAGCTGTCGTCTGAGGACATCGCCCTGCTGCGCGCGGCCGGGG
CCCGGCTCTATGAGGGTGAGACGGCCGAAGTCGGCACTGTCGAGACCTGG
TCGAACGAGGCCAGCGGCAATACCGGCGCTGTCCAGTTGATCAGCATCTT
CGAGCACAAGGGGCTGACCTGCCGGCGCCTGCAGCACGATATCAGGGTCG
ATAAAGTGGCCGACACTTTTCGCTACATCTTCGACCGCTGCAAGACCGCT
TCGGGTGAGTGGAAGCTGCTCTAG
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