mRNA_Ecto-sp13_S_contig10096.125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10096.125.1
Unique NamemRNA_Ecto-sp13_S_contig10096.125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10096.125.1 vs. uniprot
Match: D8LJD7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD7_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 5.230e-104
Identity = 189/209 (90.43%), Postives = 198/209 (94.74%), Query Frame = 1
Query:   13 QTLRECSIPPDSQLVLIDTESTVETENKRTSGVEDNGKSTAVAAQESAAAKQMATLVDLMRQQMQWNMRSESGRREQDLGSAEALETRMRGMEASLPRRLEEFMEESVGDLKASVRKALDGMEELHAKRSNAGAIQDDEDETRRKEQQEKLRLVSLTADMERVSKENSALLQELAKLKASQAATSSNIPSTVQTPAAMVVVKEEWSRPE 639
            QTLRECSIPP+SQLVLIDTESTVE ENKRT+G EDNGK+ AVAAQESAAAKQMATLVDLMRQQM+WNMRSESGRRE+DLGSAEALETRMRG+EASLPRRLEEFMEESVGDLKASVR+ALDGMEELHAKRSNAGAIQDDEDETRRKEQQEKLRL SL+ADMERVSKENSALLQELAKLKA QAA S    STVQTPAA+VVVKEE SRPE
Sbjct:  220 QTLRECSIPPESQLVLIDTESTVEAENKRTAGEEDNGKAAAVAAQESAAAKQMATLVDLMRQQMEWNMRSESGRREKDLGSAEALETRMRGIEASLPRRLEEFMEESVGDLKASVRQALDGMEELHAKRSNAGAIQDDEDETRRKEQQEKLRLASLSADMERVSKENSALLQELAKLKAPQAAASPTSASTVQTPAAVVVVKEESSRPE 428          
BLAST of mRNA_Ecto-sp13_S_contig10096.125.1 vs. uniprot
Match: A0A6H5LKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKS3_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.310e-58
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 1
Query:  490 MERVSKENSALLQELAKLKASQAATSSNIPSTVQTPAAMVVVKEEWSRPEESKDVSEDPVAPPPNPSRNTSIWELTFPAKGSRQAVVVQVSRKSTCETVCESVAEKLDVADARIVLRDKSTG 855
            MERVSKENSALLQELAKLKASQAA SS IPST+QTPAA+VVVKEE SRPE SK VSEDPVAPPPN SRNTSIWELTFP KGSRQAVVVQVSRKSTCET+CES+AEKLDVADARIVLRD STG
Sbjct:    1 MERVSKENSALLQELAKLKASQAAASSTIPSTIQTPAAVVVVKEESSRPEVSKAVSEDPVAPPPNSSRNTSIWELTFPVKGSRQAVVVQVSRKSTCETLCESIAEKLDVADARIVLRDNSTG 122          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10096.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJD7_ECTSI5.230e-10490.43C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5LKS3_9PHAE1.310e-5890.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10096contigEcto-sp13_S_contig10096:2002..6011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score336.7
Seed ortholog evalue1.1e-89
Seed eggNOG ortholog2880.D8LJD7
Preferred nameDZIP1
Model size867
KEGG koko:K16470
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001568,GO:0001578,GO:0001944,GO:0001947,GO:0002009,GO:0003006,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007507,GO:0008104,GO:0008150,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010638,GO:0010646,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019222,GO:0019953,GO:0021536,GO:0021983,GO:0021984,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030510,GO:0030900,GO:0031175,GO:0031290,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034451,GO:0034504,GO:0034613,GO:0035050,GO:0035082,GO:0035239,GO:0035270,GO:0035295,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045185,GO:0045724,GO:0045995,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051098,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051220,GO:0051234,GO:0051235,GO:0051239,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0060429,GO:0060491,GO:0060562,GO:0061371,GO:0061512,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0080090,GO:0090092,GO:0090287,GO:0097485,GO:0097539,GO:0097730,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902017,GO:1902115,GO:1902117,GO:1903506,GO:1905330,GO:2000026,GO:2000027,GO:2000112,GO:2000223,GO:2000826,GO:2001141
Exons7
EggNOG free text desc.Zinc finger protein
EggNOG OGs28IYV@1,2QRAI@2759
Cds size867
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10096.125.1prot_Ecto-sp13_S_contig10096.125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10096 2002..6011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462507.232857-CDS-Ecto-sp13_S_contig10096:2001..21541681462507.232857-CDS-Ecto-sp13_S_contig10096:2001..2154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10096 2002..2154 -
1681462507.2440963-CDS-Ecto-sp13_S_contig10096:2660..27351681462507.2440963-CDS-Ecto-sp13_S_contig10096:2660..2735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10096 2661..2735 -
1681462507.2684703-CDS-Ecto-sp13_S_contig10096:3375..35581681462507.2684703-CDS-Ecto-sp13_S_contig10096:3375..3558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10096 3376..3558 -
1681462507.2788532-CDS-Ecto-sp13_S_contig10096:4057..41501681462507.2788532-CDS-Ecto-sp13_S_contig10096:4057..4150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10096 4058..4150 -
1681462507.2894518-CDS-Ecto-sp13_S_contig10096:4545..46171681462507.2894518-CDS-Ecto-sp13_S_contig10096:4545..4617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10096 4546..4617 -
1681462507.2991972-CDS-Ecto-sp13_S_contig10096:5206..54251681462507.2991972-CDS-Ecto-sp13_S_contig10096:5206..5425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10096 5207..5425 -
1681462507.3079998-CDS-Ecto-sp13_S_contig10096:5939..60111681462507.3079998-CDS-Ecto-sp13_S_contig10096:5939..6011Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10096 5940..6011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10096.125.1

>prot_Ecto-sp13_S_contig10096.125.1 ID=prot_Ecto-sp13_S_contig10096.125.1|Name=mRNA_Ecto-sp13_S_contig10096.125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=289bp
LRDDQTLRECSIPPDSQLVLIDTESTVETENKRTSGVEDNGKSTAVAAQE
SAAAKQMATLVDLMRQQMQWNMRSESGRREQDLGSAEALETRMRGMEASL
PRRLEEFMEESVGDLKASVRKALDGMEELHAKRSNAGAIQDDEDETRRKE
QQEKLRLVSLTADMERVSKENSALLQELAKLKASQAATSSNIPSTVQTPA
AMVVVKEEWSRPEESKDVSEDPVAPPPNPSRNTSIWELTFPAKGSRQAVV
VQVSRKSTCETVCESVAEKLDVADARIVLRDKSTGKTP*
back to top

mRNA from alignment at Ecto-sp13_S_contig10096:2002..6011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10096.125.1 ID=mRNA_Ecto-sp13_S_contig10096.125.1|Name=mRNA_Ecto-sp13_S_contig10096.125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10096:2002..6011- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGTGACGACCAGACTCTGAGAGAGTGCAGCATTCCGCCAGACAGCCA GCTGGTACTTATTGACACGGAGGTAAGAGAGAACGCCCTGTCCGACCTAC GTCAAAAAATAGAAACACATTGGGTGACAAGGCCGCAGGGAGACTAAATA GGCTTGATTCCAACGCCACTAAAATACGAGAGGATTCAATGTAGAAGGTG CAGCCGGAAAACCGAGCATCGTGATTGCTGCTTTTCATCGAAGGCGGCCT GGTCTCGCCTACTATCAGTATCAAACGATATCCAAGAGGAAAAGACGCCA ATGTCAGGAAAAAACGTCAATGTCGCCATGTCGCCACACTTCCTGTGTGT CGCAGCACAACTCCACCATAAATCATGCTAACCCATCACGACACCCTAAC AACCGAGAGATGCTTTTATCTCCACCACACAGGGTTCCACCAAATATGTC GGCATTCGGAAGCGTCGTCACATTCCTTCGTTGCCATTATGGTAACATAC ACAGCGCTGTTAGTGCCATTTTTTCTTTGGCATTCGTAAACTGAGGACTG CATCACCCTTTGTTTCCTTTGCTGTGTTTCATGAAGTCCACCGTAGAGAC AGAGAACAAAAGAACGTCAGGAGTAGAGGACAACGGCAAATCTACCGCCG TTGCTGCTCAAGAATCAGCCGCAGCGAAACAAATGGCGACCCTCGTGGAC CTCATGCGACAGCAAATGCAGTGGAACATGAGGAGTGAGAGCGGCAGGCG GGAGCAGGACCTAGGGTCGGCCGAAGCCCTAGAGACGAGAATGCGAGGGA TGGAGGTATTGTAACGTTCTCCCGTGCTAGCATGCTGTCCCGCTACCATC CTGCTTTGATTTCTGCATCCAACGTGGCTGGGATGACCCCTCCGCGCTGT TTCTTTGACGTTCTAGAATGACAACAAGCCTATCGTTGCCCCGGTCAGTT GTCAGGCTCAACCTTTGGTGGGGGTGAGGTTAGAGGAGAAGATCGCCCGT CCTTCCGAGTTAGGAGGAGCTTGGTCAGAGAGGATACTCCCTTGGTCGTT CAGAAGCAAGTGCGTAGCTGAAGTTAAGCCCGCGCTACAGACCACGTGCC ACTAGAGACTACCTCGAAGCGCTGAGAAGGGTGTCCTGTACTTTTCGCTC TTACCGTCCTCTTCATTCCGTTGTTGCTGACTTTCTGGGCGATGCTTTTT TTGAACCGTTCCCCCGACTTTTTTTTCTCATTCCGCCGGGTGTCCTTCCT CTACTTGCAGTGTTGTAAGGCGTACAAGCATTCCGCCTGTCCCTCCGTAT TCACCCTTTTTCTTCGTGACTGGGGATGTCCTACTCAGTCCTTCTGGCAT GCGTCAACTCTCTGTGTTCACTTTGTGCGTTCGTTTCGTTTTAGGCGTCG TTACCTCGGCGGCTGGAGGAGTTCATGGAAGAGAGCGTCGGCGACCTCAA GGCCTCAGTACGCAAGGTGCCGTTAACCCACAGCAAACACAGTGGTGACC TTTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNTTACCGCGTTTCAGTTACGCCACGACGAA AGCACTCACGCTCGTTGCTCGCTCGGTCGTTCCATCCGACAACGCGGCAC TCTTCCCGAAGGCCCTAGACGGGATGGAGGAACTGCATGCGAAACGGTCG AATGCTGGGGCGATTCAAGACGATGAGGACGAGACTAGAAGAAAGGAGCA ACAGGTGAGGTGGGGCCACGCACACTTTTCAATGGTTGCGCTGGAATGAC GCGCGCCCTTAAAAGTGTTTACGTATGACGTGTGGCGGTGGATCGTACCC GATAGTAGTGACGAATCAAAAAAGGGAACACCACATACATGATGTTGCAT ACCTATTCTACCGCGGCGTTTGAAATCAGTCATGGCTTCGGCAGAGCAAA GGGGGAGCCCATGCCGAAGAAGATTCAGTGTCGGCTATCCATACAACCTC ACCACCCTGTTATGCCCAATCGATACGAAAAACAACCCTCCGCATGGTTG ATCCCCATTCAGACCTGGCCTGAAACAAACGATCACTTCGTTATGGAACA GAGACTCCATTGGTTCCGAAAAAACGAAAGGCGGGTTTAGAAACGCAGAT CAGCGGAGGATCGTGTGCTTCATTCTAAATGGTGATGAAATATGACACTG AGCGTCGACCCGAACTTGATTGACGTTTCTTAATTGCGGATCCGTTTCCA TAGGAGAAGTTGCGTCTGGTCTCGCTGACGGCGGACATGGAACGCGTTTC CAAAGAGAATTCAGCCTTGCTGCAGGAGTTGGCCAAGCTCAAGGCCTCAC AAGCAGCAACAAGCTCAAACATCCCCAGCACTGTCCAAACCCCAGCGGCT ATGGTCGTGGTGAAAGAGGAATGGTCTCGACCTGAGGTGGGGGGGAAGCG GGTTGTAAACGGGTAGTGGCTTGCATGGACGGCATGAAGAAGGCATGTCC CATTGAATTCCGGCTTGCGCAATCATTTTGGCACCTGGCGCACGATTTGT AGCCTTAGATGTGACAGACCGAGGCTGGAAGCTCTTGTGCTCTTCGACAG TTGTGGGCAGAGGGCGATGACGGTCGGTGCGTTGCCGCCATGGGATATAA CGACAGCGTACAGCGTGGGGAGTTCAAACCCTCACGGGGTAGTACGCCAA TCACGCCTCTTCATGGGAAAGGTTTCTCGGAAGCGCTTCTCGTTCCGCCT GAGTTTTCGTTGAAAAGCACGGAATCTTCGGAAGTGAAATTGAATGTCAC CTGTCTACAGTAGCTACCACTGAAACCTCGTGCGAGCACGTAATCATGCA CCAAGCAAGCTTTGCGTGAGAAACCCTCCGGCGTTTGCCCGCCATACGGT TGCCATCCAAGAGAAGACCCTACAGACTACGTGCGCACATGTAGTTGGTA CGCGAGGAAACTGTTGGAGGCGACCCACTTTTCTGCCATGTTAGAAAACG AGTGCCAGCCATACGCATGAATACACTGCGCACTCCTTCCTTGTCCAACA AAATGCCGCTCCACGGTTCTTCACAGGAATCGAAAGATGTCTCTGAGGAC CCTGTGGCACCCCCTCCCAACCCATCGCGCAACACGTCAATTTGGGAGTT GGTGAGTTCTTGCGTGACTATTCGAAGTGACCCGTGCTCACTGCGACGCA TCGTTGCAAGGTCTCATTTACGTGGGGTGCCAGTGCCACGAGAAAGCATA TTTGCCGTGTGAGTATCAAAACATGATACATTGGCGCACGTGGAATGACC TAGACATACAGATCACTTGGGTCGGTCTTTCGCCCAGGACTTAAGTACTG GCAGGTGCCCGTTGTCTGCTTCAGTTTGTCAGGCACGTTTGTAGGTAAAA CGACCCGGATAACCAATCTCGAGGAAAGGATGACAAAAGCCGGGCGCTTT GTCCTATGTACGACCGCTGCCAACCATTTACACAACATGGGGCTGTTCCG GGTTCAAGCCACCAATGCTCGATTTTTCCTGAAGGGGATGGTCATGATCG CGTTGTTGGTGGTGTAAGTGTATGATGCCTGCTGGATCTTCTCTCATCGT GGGTTCACTCTGTTGGTTCCTCGTGTGCCGTCCTTCTTGCGTCGGTTCTC ACCTCAGACTTTCCCCGCGAAAGGCTCGAGACAAGCCGTCGTCGTCCAAG TGTCGCGGAAATCCACGTGCGAGACTGTGTGCGAGTCTGTCGCCGAGAAG TTGGACGTCGCCGACGCAAGGATCGTCTTGCGTGACAAAAGCACAGGCAA GACTCCGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10096:2002..6011-

>mRNA_Ecto-sp13_S_contig10096.125.1 ID=mRNA_Ecto-sp13_S_contig10096.125.1|Name=mRNA_Ecto-sp13_S_contig10096.125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10096:2002..6011- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGTGACGACCAGACTCTGAGAGAGTGCAGCATTCCGCCAGACAGCCA
GCTGGTACTTATTGACACGGAGTCCACCGTAGAGACAGAGAACAAAAGAA
CGTCAGGAGTAGAGGACAACGGCAAATCTACCGCCGTTGCTGCTCAAGAA
TCAGCCGCAGCGAAACAAATGGCGACCCTCGTGGACCTCATGCGACAGCA
AATGCAGTGGAACATGAGGAGTGAGAGCGGCAGGCGGGAGCAGGACCTAG
GGTCGGCCGAAGCCCTAGAGACGAGAATGCGAGGGATGGAGGCGTCGTTA
CCTCGGCGGCTGGAGGAGTTCATGGAAGAGAGCGTCGGCGACCTCAAGGC
CTCAGTACGCAAGGCCCTAGACGGGATGGAGGAACTGCATGCGAAACGGT
CGAATGCTGGGGCGATTCAAGACGATGAGGACGAGACTAGAAGAAAGGAG
CAACAGGAGAAGTTGCGTCTGGTCTCGCTGACGGCGGACATGGAACGCGT
TTCCAAAGAGAATTCAGCCTTGCTGCAGGAGTTGGCCAAGCTCAAGGCCT
CACAAGCAGCAACAAGCTCAAACATCCCCAGCACTGTCCAAACCCCAGCG
GCTATGGTCGTGGTGAAAGAGGAATGGTCTCGACCTGAGGAATCGAAAGA
TGTCTCTGAGGACCCTGTGGCACCCCCTCCCAACCCATCGCGCAACACGT
CAATTTGGGAGTTGACTTTCCCCGCGAAAGGCTCGAGACAAGCCGTCGTC
GTCCAAGTGTCGCGGAAATCCACGTGCGAGACTGTGTGCGAGTCTGTCGC
CGAGAAGTTGGACGTCGCCGACGCAAGGATCGTCTTGCGTGACAAAAGCA
CAGGCAAGACTCCGTAA
back to top