mRNA_Ecto-sp13_S_contig1141.1242.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1141.1242.1
Unique Name	mRNA_Ecto-sp13_S_contig1141.1242.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: D7G1A4_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A4_ECTSI)

HSP 1 Score: 941 bits (2431), Expect = 0.000e+0
Identity = 705/728 (96.84%), Postives = 712/728 (97.80%), Query Frame = 3

Query:  258 MSHGAGQRGLRPMDAHANTRRSDKGHSMLDMAAAQGYTEAIKTILARGADINSATPDGRTALHCASFWDQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLLHASEEDNAGFVDRRCGSDEYSALDLAACGGHQQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEARSPGRHRWSALHVACAYGSNEAVSALLTHDALLFGRDASNHTPLHLAVQRGHDSTVEILLRWGSDPTYISCVSACRYSPLDVAASLGNMNALKAMCAHMRDKARWEFTRAVGDALYAAILSDQVGAIKWLMSVGASVSNTWGKKGGXXXXXXXXXXXXXXXXXXXXXXXXTDRCDENNRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADILGSSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSPDRLAALEALLAAGADVALRVAGVPNDQPNALDLAAGAGHVDAITALIRAGALVGARDGDGRTALICAVKSNKPRAVDALAEAGADVEAHLVDESWTSLHTAAEDTHLEVVRVLLKHRADVHARDADNDNDTPLHVAVRQAGVHGAVEIVQELLLHGADEGKKNDSGLTPASVVGSAAAVGLFDAIDPALLPVLELPAQVVAYLLARAPADRAWRR 2441
            MS GAGQRGLRP D HAN RRSD  HSMLDMAAAQGYTEAIKTILARGAD+NSATPDGRTALHCASFWDQAG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    HASEEDNAGFVDRR GSDEYSALDLAACGGHQQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEARSPGRHRWSALHVACAYGSNEAVSALLTHDALLFGRDASNHTPLHLAVQ GHDSTVEILLRWGSDPTYISCVSACRYSPLDVAASLGNMNALKAMCAHMRDKARWEFTRAVGDALYAAILSDQVGAIKWL+SVGASVSNTWGKKGGXXXXXXXXXXXXXXXXXXXXXXXXTDRCDENNRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADILGSSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGSPDRLAALEALL+AGADVALRVAGVP+DQPNALDLAAGAGHVDAITALIRAGA VGARDGDGRTALICAVKSNKPRAVDALAEAGADVEAHLVDESWTSLH+AAEDTHLEVVRVLLKHRADVHARDADNDNDTPLHVAVRQAGV GAVEIVQELLLHGADEGKKNDSGLTPASVVGSAAAVGLFD++DPALLPVLELPAQVVAYLLARAPADRAWRR
Sbjct:    1 MSRGAGQRGLRPADTHANARRSDTRHSMLDMAAAQGYTEAIKTILARGADVNSATPDGRTALHCASFWDQAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHASEEDNAGFVDRRYGSDEYSALDLAACGGHQQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEARSPGRHRWSALHVACAYGSNEAVSALLTHDALLFGRDASNHTPLHLAVQYGHDSTVEILLRWGSDPTYISCVSACRYSPLDVAASLGNMNALKAMCAHMRDKARWEFTRAVGDALYAAILSDQVGAIKWLVSVGASVSNTWGKKGGXXXXXXXXXXXXXXXXXXXXXXXXTDRCDENNRSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADILGSSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPDRLAALEALLSAGADVALRVAGVPDDQPNALDLAAGAGHVDAITALIRAGAPVGARDGDGRTALICAVKSNKPRAVDALAEAGADVEAHLVDESWTSLHSAAEDTHLEVVRVLLKHRADVHARDADNDNDTPLHVAVRQAGVQGAVEIVQELLLHGADEGKKNDSGLTPASVVGSAAAVGLFDSVDPALLPVLELPAQVVAYLLARAPADRAWRR 728

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: A0A6H5KCF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF0_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 1.350e-80
Identity = 151/164 (92.07%), Postives = 154/164 (93.90%), Query Frame = -2

Query: 1499 MRAVLPSPSLAPTSAPARISAVMASTWPAPAARSRAFGWSLGTPATRRATSAPAAXXXXXAASRSGEPAARCSGDLPRPFALFKSAPCFTRAATAEAELATVAAWSGLEPRMSAASRLEPHLTSRSIEAT*SDSPARWSAVVSFGGSAVFTSAPCWISARITPT 1990
            MRAVLPSPSLAPTSAPARISAVMASTWPA AARSRAFGWS GTPATRRATSAPAAXXXX AA+RSGEPAARCSGDLPRPF LF SAPC  RAATAEAELATVAAWSGLEPRMSAASRLEP LT+RSIEA  SDSPARWSAV+SFGGSAVFTSAPCWISARITPT
Sbjct:    1 MRAVLPSPSLAPTSAPARISAVMASTWPASAARSRAFGWSSGTPATRRATSAPAAXXXXSAANRSGEPAARCSGDLPRPFTLFTSAPCLARAATAEAELATVAAWSGLEPRMSAASRLEPLLTNRSIEAIWSDSPARWSAVISFGGSAVFTSAPCWISARITPT 164

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: A0A6H5KCF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF2_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 3.280e-34
Identity = 65/72 (90.28%), Postives = 68/72 (94.44%), Query Frame = 3

Query:  258 MSHGAGQRGLRPMDAHANTRRSDKGHSMLDMAAAQGYTEAIKTILARGADINSATPDGRTALHCASFWDQAG 473
            MS GAGQRGLRP DAH NTRRSD GHS+LDMAAAQGYTEA+KTILARGAD+NSATPDGRTALHCASFWDQAG
Sbjct:    1 MSRGAGQRGLRPTDAHTNTRRSDTGHSILDMAAAQGYTEAMKTILARGADVNSATPDGRTALHCASFWDQAG 72

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: D8LJC1_ECTSI (Ankyrin repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.070e-16
Identity = 77/209 (36.84%), Postives = 109/209 (52.15%), Query Frame = 3

Query:  747 YSALDLAACGGHQQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEARS-PGRHRWSALHVACAYGSNEAVSALLTHDALL--------FGRDASNHTPLHLAVQRGHDSTVEILLRWGSDPTYISCVSACRYSPLDVAASLGNMNALKAMCAHMRDKARWEFTRAVG-DALYAAILSDQVGAIKWLMSVGASVS 1343
            +SAL LAA GGH ++++ LIRHG DVNA DS+G TAL+ AA+ D   +IDVL++AGA ++A+       ++ LHVA   GS+EA  +L+ H A +        +GR   N   L LA  RGH   V  LL  G +       S    S LD A   G+ + +  +  H    A  + T + G  AL+          I  L++ GASV+
Sbjct:  108 FSALGLAARGGHVEVMQALIRHGVDVNAPDSNGCTALHSAAIGDAVGAIDVLIEAGASIDAQGGEDGEMYTPLHVASEKGSSEAALSLVKHGADVHRSGRMSRWGRSCGN--ALILAAGRGHTMIVTSLLAAGVNVNLRPAYSD--KSALDAAFQGGHADIVTTLIQH---GAFVDATDSRGCTALFKVSHDTNAALIDKLVAAGASVN 309

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.440e-15
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = 3

Query:  747 YSALDLAACGGHQQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEARS-PGRHRWSALHVACAYGSNEAVSALLTHDALLF--GRDASNH--TPLHLAVQRGHDSTVEILLRWG 1118
            +SAL LAA GGH ++++ LIRHG DV+  DS+G TAL+ AA+ D   +IDVL++AGA ++A+      R++ LHVA   GS+EA  +L+ H A +   G+         L+LA  RGH   V  LL  G
Sbjct:  177 FSALGLAARGGHVEVMQALIRHGVDVDGPDSNGCTALHSAAIGDAVGAIDVLIEAGASIDAQGGEDGARYTPLHVASEQGSSEAALSLVKHGADVHRSGKTCRRRRCNALNLAAGRGHTMIVTSLLAAG 305

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.030e-13
Identity = 75/190 (39.47%), Postives = 94/190 (49.47%), Query Frame = 3

Query: 1881 NALDLAAGAGHVDAITALIRAGALVGARDGDGRTALICAVKSNKPRAVDALAEAGADVEAHLVDESWTSLHTAA---EDTHLEVVRVLLKHRADVHARDADNDNDTPLHVAVRQAGVHGAVEIVQELLLHGADEGKKNDSGLTPASVVGSAAAVGLFDAIDPALLPVLELPAQVVAYLLARAPADRAWRR 2441
            +ALD+ AG GHVD I  LI  GA V A +  G  AL  A  +NK  A+D L  AGA+  + + +   T LH AA     T    + VLLKH ADV+A+     +   L     +AG  G VE+V  LL  GADE     +G+  A  +G    V   D I            + V  LLA APADRAWRR
Sbjct:  162 SALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARS-MSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTS--VLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGM--KVPEEDRIPEEF--------EGVRKLLANAPADRAWRR 338

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.170e-13
Identity = 56/138 (40.58%), Postives = 82/138 (59.42%), Query Frame = 3

Query:  729 RCGSDE-YSALDLAACGGHQQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEARS-PGRHRWSALHVACAYGSNEAVSALLTHDA------LLFGRDASNHTPLHLAVQRGHDSTVEILLRWG 1118
            R G  E +SAL LAA GGH ++++ LIRHG DV+A DS+G+TAL+ AA  D   +I+ L++AGA ++A+      R++ LH+A   G +EA  +L+ H A       +  R+      L LA  RGH + V+ LL  G
Sbjct:  144 RYGKGEAFSALGLAARGGHVEVMQALIRHGVDVDAPDSNGLTALHSAATGDAVGAIETLMEAGANIDAQGGEDGARYTPLHMASEKGLSEAALSLVKHRADVHRSGKMSRRERKCCNALSLAAGRGHIAVVKSLLAAG 281

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.830e-12
Identity = 80/216 (37.04%), Postives = 104/216 (48.15%), Query Frame = 3

Query: 1800 RLAALEALLAAGADVALRVAGVPNDQPNALDLAAGAGHVDAITALIRAGALVGARDGDGRTALICAVKSNKPRAVDALAEAGADVEAHLVDESWTSLHTAAEDTHLEVVRVLLKHRADVHARDADNDNDTPLHVAVRQAGVHGAVEIVQELLLHGADEGKKNDSGLTPASVV--GSAAAVGLFDAIDPALLPVLELPAQVVAYLLARAPADRAWRR 2441
            R AA +ALL AGADVALR  GV                          G  V A+  +G TAL  A   +K  A+D L EAGA++EA       T LH A+++  L     LL+H A V  ++A     TPLH+   +AG  G  E+V  LL  GADE   +++G T A +V   +  +  L + +D             V  LLARAPADRAWRR
Sbjct:  502 RAAAAQALLDAGADVALRQNGVGLSSXXXXXXXX---XXXXXXXXXXHGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIEAQA--NGSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQ--TPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDR------------VRKLLARAPADRAWRR 698

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: D7G0W2_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.570e-12
Identity = 56/158 (35.44%), Postives = 81/158 (51.27%), Query Frame = 3

Query:  720 VDRRCGSDEYSALDLAACGGHQQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEARSPGRHRWSALHVACAYGSNEAV-SALLTHDALLFGRDA-SNHTPLHLAVQR----GHDSTVEILLRWGSDPTYISCVSACRYSPLDV 1175
            V+ R GS+ YS LD +       + + +++ G     S SDG TAL+ A  N    +ID+LV AGA +EA+       + LH+A     N AV  AL  H A +  ++  S +TPLH+A Q         TV+ LL+ G+D T + C      +PLDV
Sbjct:    7 VNVRDGSNGYSPLDCSVRSDGMDLTRQVLQRGAIATESSSDGCTALHWAGWNMNASAIDLLVGAGANLEAKIAADAEATPLHLAARQAGNAAVIEALARHGADVHAQETPSGNTPLHVAAQNCTTESSWETVDALLKAGADETRLDCQGQ---TPLDV 161

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BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Match: UPI001FF60701 (ankyrin repeat domain-containing protein n=1 Tax=Alcanivorax sp. S6407 TaxID=2926424 RepID=UPI001FF60701)

HSP 1 Score: 80.5 bits (197), Expect = 1.060e-11
Identity = 44/133 (33.08%), Postives = 77/133 (57.89%), Query Frame = 3

Query:  720 VDRRCGSDEYSALDLAACGGHQQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEARSPGRHRWSALHVACAYGSNEAVSALLTHDALLFGRDASNHTPLHLAVQRGHDSTVEILLRWG 1118
            ++ R G   +++L  AA  G +  +  LI    ++NA+ SDG +ALY AA ++ P  + +L+ AGA  E  + GR++W+ +H A   G+ E +  LL + A    RD    TP+ LA+++G++ T ++L  +G
Sbjct:  447 LNSRSGKGGFTSLMTAADNGQKDAILALIGAQAEINATTSDGYSALYYAAGSNHPDVVTMLMAAGANPELGA-GRYQWTPVHKAAQEGNYEVLENLLKYGANANARDTDGDTPMDLAMRKGYEKTPQVLGSYG 578

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1141.1242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G1A4_ECTSI	0.000e+0	96.84	Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si...	[more]
A0A6H5KCF0_9PHAE	1.350e-80	92.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCF2_9PHAE	3.280e-34	90.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LJC1_ECTSI	3.070e-16	36.84	Ankyrin repeat protein (Partial) (Fragment) n=1 Ta...	[more]
D7G751_ECTSI	6.440e-15	43.41	Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo...	[more]
D7FKL4_ECTSI	2.030e-13	39.47	Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28...	[more]
A0A6H5JN15_9PHAE	2.170e-13	40.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHY9_9PHAE	1.830e-12	37.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G0W2_ECTSI	2.570e-12	35.44	Ankyrin repeat domain protein n=1 Tax=Ectocarpus s...	[more]
UPI001FF60701	1.060e-11	33.08	ankyrin repeat domain-containing protein n=1 Tax=A...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1141	contig	Ecto-sp13_S_contig1141:14764..17828 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	947.6
Seed ortholog evalue	4e-273
Seed eggNOG ortholog	2880.D7G1A4
Model size	2696
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	response to abiotic stimulus
EggNOG OGs	COG0666@1,KOG4177@2759
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-12_005230.1
Cds size	2514
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462598.2212818-CDS-Ecto-sp13_S_contig1141:14763..17277	1681462598.2212818-CDS-Ecto-sp13_S_contig1141:14763..17277	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1141 14764..17277 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462598.235551-UTR-Ecto-sp13_S_contig1141:17277..17364	1681462598.235551-UTR-Ecto-sp13_S_contig1141:17277..17364	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig1141 17278..17364 -
1681462598.2459471-UTR-Ecto-sp13_S_contig1141:17733..17828	1681462598.2459471-UTR-Ecto-sp13_S_contig1141:17733..17828	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig1141 17734..17828 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1141.1242.1	prot_Ecto-sp13_S_contig1141.1242.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1141 14764..17277 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1141:14764..17828-
coding sequence from alignment at Ecto-sp13_S_contig1141:14764..17828-

protein sequence of mRNA_Ecto-sp13_S_contig1141.1242.1

>prot_Ecto-sp13_S_contig1141.1242.1 ID=prot_Ecto-sp13_S_contig1141.1242.1|Name=mRNA_Ecto-sp13_S_contig1141.1242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=838bp
MSTLFRPPFFGRSSDYIHKANTVESMSHGAGQRGLRPMDAHANTRRSDKG
HSMLDMAAAQGYTEAIKTILARGADINSATPDGRTALHCASFWDQAGAVE
LLVASGARLEASDGRGCTPLHVAAENGATTAIVSLVNGGADKSKVNSDGL
SPLLVAVENGRLTAATVLLHASEEDNAGFVDRRCGSDEYSALDLAACGGH
QQILKMLIRHGCDVNASDSDGVTALYLAALNDQPYSIDVLVKAGAKVEAR
SPGRHRWSALHVACAYGSNEAVSALLTHDALLFGRDASNHTPLHLAVQRG
HDSTVEILLRWGSDPTYISCVSACRYSPLDVAASLGNMNALKAMCAHMRD
KARWEFTRAVGDALYAAILSDQVGAIKWLMSVGASVSNTWGKKGGALQVA
ALAGSTGAAEALLAAGASITDRCDENNRSALDIATKNGHVGVMRALIQHG
ADVNTADPPNETTALHLAGESDQVASIDLLVKCGSNLDAADILGSSPLHA
ATVANSASAVAALVKHGADLNKANGLGRSPLHLAAGSPDRLAALEALLAA
GADVALRVAGVPNDQPNALDLAAGAGHVDAITALIRAGALVGARDGDGRT
ALICAVKSNKPRAVDALAEAGADVEAHLVDESWTSLHTAAEDTHLEVVRV
LLKHRADVHARDADNDNDTPLHVAVRQAGVHGAVEIVQELLLHGADEGKK
NDSGLTPASVVGSAAAVGLFDAIDPALLPVLELPAQVVAYLLARAPADRA
WRRRRFVIMCCARLKKENERSSGKEKKRKNEKRRAGGVVVVQDSSGTSDG
EREGQDRGGAKDNFDSVVAWLVGLSEEGLFRTVVGFL*

mRNA from alignment at Ecto-sp13_S_contig1141:14764..17828-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1141.1242.1 ID=mRNA_Ecto-sp13_S_contig1141.1242.1|Name=mRNA_Ecto-sp13_S_contig1141.1242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1141:14764..17828- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGTGTGCTGTGTATGATGTAGCAACACTGCACTACCAGGAGAAGCTTC
GAGGTCGGCAACCCGAACGCCCGCGTCCTAAGGCACTGCAGTCGGGTATG
TCGTGAAGGGTAAGTCTGTCAGCACCCGATATATTAAAACCCCCCTACAA
TCTGTGTATCTCAACATCCAAAATGCGGAGCGAGGAAGGGGAGACCGTCG
TTCAAACGAAAGGGTCGATTGTTGTAGAACGCAAAGATTTCAAGGTGGAA
TCAACGATACTGTCAGCGTCAAAAGAAGCGACTGGACTGGCGTGGGCCTG
AACGCCAACGATTTCAAAGTCCGGAGAAATAGTTAATCACAGCAGCAATG
GAACCTTGAGAGGTGCATCGCAACAAAAGAAGCTCCTCGAACACGTGATA
ACGTCCCACATCTCATTGCGCCATTACCTCCCTTGTTGCTCCTAAACCGT
TACTCTTTCTTCAGCCGGTGTGCTTTCATACGACGACAAGCCGTAGCCTG
CAGCCGCGGTTTCGCCGCTTTCTTGTCGCTGTAACCCGAGGTTGCGAATG
AATGTCGACGCTTTTTCGTCCACCTTTTTTCGGACGATCAAGTGACTACA
TACATAAGGCGAACACGGTGGAGTCCATGAGTCACGGGGCGGGACAAAGG
GGCCTTCGACCCATGGACGCTCATGCAAACACTCGCCGTAGCGACAAGGG
GCACTCAATGCTGGACATGGCCGCTGCGCAAGGTTATACCGAGGCCATCA
AGACGATCCTCGCACGCGGCGCCGATATCAACTCCGCCACGCCGGACGGC
AGAACGGCTCTACATTGCGCTTCGTTCTGGGATCAGGCGGGCGCCGTGGA
ACTTCTGGTTGCGTCTGGAGCTCGTCTGGAAGCCTCAGACGGCCGGGGGT
GTACCCCGCTGCATGTAGCGGCTGAGAACGGCGCTACGACTGCCATTGTT
TCTCTCGTGAACGGCGGGGCAGATAAAAGCAAGGTCAACAGTGACGGCCT
CTCACCTTTGCTCGTAGCGGTGGAGAACGGCCGCCTCACGGCGGCCACGG
TTCTCTTGCATGCGTCCGAAGAAGACAACGCAGGGTTTGTCGACCGTCGT
TGTGGCAGCGACGAGTACAGCGCGCTTGACTTAGCCGCCTGCGGGGGTCA
CCAGCAAATATTGAAGATGCTCATCCGGCATGGGTGCGACGTCAACGCCA
GCGACTCGGACGGCGTTACCGCGCTCTACCTCGCCGCCTTGAACGACCAG
CCGTACTCCATCGATGTGCTCGTCAAGGCGGGCGCTAAGGTCGAAGCCCG
TTCCCCCGGCCGCCACAGGTGGTCGGCCCTTCACGTCGCCTGCGCGTATG
GCTCCAACGAGGCGGTCTCCGCCCTCCTGACTCACGACGCGTTGCTGTTT
GGCCGCGACGCTAGCAACCACACACCTCTTCACCTCGCCGTTCAGCGCGG
TCATGATTCCACGGTGGAAATTCTTCTGAGGTGGGGCTCGGACCCAACCT
ACATTTCTTGCGTATCTGCTTGCAGGTACTCACCTTTGGACGTGGCTGCT
TCCCTAGGGAACATGAACGCGCTAAAAGCAATGTGCGCACACATGCGCGA
CAAAGCGAGGTGGGAGTTTACGCGAGCGGTTGGAGACGCTCTCTACGCCG
CGATACTGTCGGATCAGGTTGGCGCGATAAAGTGGCTCATGTCTGTTGGG
GCTAGCGTGAGCAACACCTGGGGCAAGAAAGGCGGAGCCTTACAAGTTGC
GGCCTTGGCCGGGTCTACGGGTGCGGCGGAAGCTCTCCTGGCTGCCGGCG
CAAGCATCACGGACCGGTGCGACGAAAACAACCGTAGCGCCCTCGACATC
GCCACCAAGAACGGTCACGTGGGCGTAATGCGAGCGCTGATCCAGCACGG
CGCCGACGTGAACACCGCCGATCCACCGAACGAGACAACAGCGCTCCACC
TGGCGGGAGAATCCGATCAGGTCGCCTCTATTGACCTGCTGGTCAAGTGC
GGCTCCAACCTCGACGCCGCGGACATCCTGGGCTCCAGCCCGCTCCACGC
CGCCACCGTCGCCAACTCCGCCTCCGCGGTTGCCGCTCTCGTGAAGCACG
GGGCCGACTTGAACAAGGCGAACGGCCTAGGGAGGTCACCGCTGCATCTT
GCGGCCGGTTCTCCGGACCGACTCGCCGCGCTGGAGGCCCTCCTGGCCGC
CGGCGCGGACGTTGCCCTCCGCGTGGCCGGGGTCCCCAACGACCAACCGA
ACGCTCTCGACCTGGCCGCGGGCGCGGGCCACGTCGATGCCATCACCGCG
CTGATCCGGGCCGGCGCGCTTGTGGGCGCGAGGGACGGCGACGGCAGGAC
GGCCCTCATCTGCGCCGTGAAGAGCAACAAGCCCCGCGCCGTGGATGCCC
TCGCCGAGGCCGGGGCGGACGTCGAAGCCCACCTCGTCGACGAGAGCTGG
ACCTCTCTCCACACGGCGGCCGAGGACACCCACCTCGAGGTCGTGCGGGT
GCTCCTGAAGCACCGCGCCGACGTCCACGCAAGGGACGCGGACAACGACA
ACGACACGCCGCTGCACGTTGCGGTTCGCCAGGCCGGGGTGCACGGCGCC
GTCGAGATCGTCCAGGAGCTGCTCCTGCACGGCGCCGACGAGGGGAAGAA
GAACGACAGCGGCCTCACCCCCGCGAGCGTTGTCGGCTCCGCCGCCGCCG
TCGGCCTGTTCGATGCCATCGACCCCGCCCTCCTCCCCGTGCTGGAGCTA
CCGGCCCAAGTCGTGGCGTACCTGCTGGCGCGAGCTCCGGCGGACCGGGC
GTGGCGTCGGCGCAGGTTCGTGATTATGTGTTGCGCTCGCCTAAAGAAAG
AGAACGAGCGAAGCTCCGGGAAAGAAAAGAAAAGGAAGAACGAAAAACGG
CGGGCTGGAGGGGTAGTGGTAGTACAGGACTCCAGTGGCACCTCCGATGG
TGAGCGTGAAGGGCAGGACCGGGGGGGTGCCAAGGACAACTTCGACAGCG
TGGTGGCGTGGCTGGTTGGGCTGTCAGAGGAGGGGCTGTTTCGGACCGTC
GTGGGGTTTCTGTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1141:14764..17828-

>mRNA_Ecto-sp13_S_contig1141.1242.1 ID=mRNA_Ecto-sp13_S_contig1141.1242.1|Name=mRNA_Ecto-sp13_S_contig1141.1242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2514bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1141:14764..17828- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGACGCTTTTTCGTCCACCTTTTTTCGGACGATCAAGTGACTACAT
ACATAAGGCGAACACGGTGGAGTCCATGAGTCACGGGGCGGGACAAAGGG
GCCTTCGACCCATGGACGCTCATGCAAACACTCGCCGTAGCGACAAGGGG
CACTCAATGCTGGACATGGCCGCTGCGCAAGGTTATACCGAGGCCATCAA
GACGATCCTCGCACGCGGCGCCGATATCAACTCCGCCACGCCGGACGGCA
GAACGGCTCTACATTGCGCTTCGTTCTGGGATCAGGCGGGCGCCGTGGAA
CTTCTGGTTGCGTCTGGAGCTCGTCTGGAAGCCTCAGACGGCCGGGGGTG
TACCCCGCTGCATGTAGCGGCTGAGAACGGCGCTACGACTGCCATTGTTT
CTCTCGTGAACGGCGGGGCAGATAAAAGCAAGGTCAACAGTGACGGCCTC
TCACCTTTGCTCGTAGCGGTGGAGAACGGCCGCCTCACGGCGGCCACGGT
TCTCTTGCATGCGTCCGAAGAAGACAACGCAGGGTTTGTCGACCGTCGTT
GTGGCAGCGACGAGTACAGCGCGCTTGACTTAGCCGCCTGCGGGGGTCAC
CAGCAAATATTGAAGATGCTCATCCGGCATGGGTGCGACGTCAACGCCAG
CGACTCGGACGGCGTTACCGCGCTCTACCTCGCCGCCTTGAACGACCAGC
CGTACTCCATCGATGTGCTCGTCAAGGCGGGCGCTAAGGTCGAAGCCCGT
TCCCCCGGCCGCCACAGGTGGTCGGCCCTTCACGTCGCCTGCGCGTATGG
CTCCAACGAGGCGGTCTCCGCCCTCCTGACTCACGACGCGTTGCTGTTTG
GCCGCGACGCTAGCAACCACACACCTCTTCACCTCGCCGTTCAGCGCGGT
CATGATTCCACGGTGGAAATTCTTCTGAGGTGGGGCTCGGACCCAACCTA
CATTTCTTGCGTATCTGCTTGCAGGTACTCACCTTTGGACGTGGCTGCTT
CCCTAGGGAACATGAACGCGCTAAAAGCAATGTGCGCACACATGCGCGAC
AAAGCGAGGTGGGAGTTTACGCGAGCGGTTGGAGACGCTCTCTACGCCGC
GATACTGTCGGATCAGGTTGGCGCGATAAAGTGGCTCATGTCTGTTGGGG
CTAGCGTGAGCAACACCTGGGGCAAGAAAGGCGGAGCCTTACAAGTTGCG
GCCTTGGCCGGGTCTACGGGTGCGGCGGAAGCTCTCCTGGCTGCCGGCGC
AAGCATCACGGACCGGTGCGACGAAAACAACCGTAGCGCCCTCGACATCG
CCACCAAGAACGGTCACGTGGGCGTAATGCGAGCGCTGATCCAGCACGGC
GCCGACGTGAACACCGCCGATCCACCGAACGAGACAACAGCGCTCCACCT
GGCGGGAGAATCCGATCAGGTCGCCTCTATTGACCTGCTGGTCAAGTGCG
GCTCCAACCTCGACGCCGCGGACATCCTGGGCTCCAGCCCGCTCCACGCC
GCCACCGTCGCCAACTCCGCCTCCGCGGTTGCCGCTCTCGTGAAGCACGG
GGCCGACTTGAACAAGGCGAACGGCCTAGGGAGGTCACCGCTGCATCTTG
CGGCCGGTTCTCCGGACCGACTCGCCGCGCTGGAGGCCCTCCTGGCCGCC
GGCGCGGACGTTGCCCTCCGCGTGGCCGGGGTCCCCAACGACCAACCGAA
CGCTCTCGACCTGGCCGCGGGCGCGGGCCACGTCGATGCCATCACCGCGC
TGATCCGGGCCGGCGCGCTTGTGGGCGCGAGGGACGGCGACGGCAGGACG
GCCCTCATCTGCGCCGTGAAGAGCAACAAGCCCCGCGCCGTGGATGCCCT
CGCCGAGGCCGGGGCGGACGTCGAAGCCCACCTCGTCGACGAGAGCTGGA
CCTCTCTCCACACGGCGGCCGAGGACACCCACCTCGAGGTCGTGCGGGTG
CTCCTGAAGCACCGCGCCGACGTCCACGCAAGGGACGCGGACAACGACAA
CGACACGCCGCTGCACGTTGCGGTTCGCCAGGCCGGGGTGCACGGCGCCG
TCGAGATCGTCCAGGAGCTGCTCCTGCACGGCGCCGACGAGGGGAAGAAG
AACGACAGCGGCCTCACCCCCGCGAGCGTTGTCGGCTCCGCCGCCGCCGT
CGGCCTGTTCGATGCCATCGACCCCGCCCTCCTCCCCGTGCTGGAGCTAC
CGGCCCAAGTCGTGGCGTACCTGCTGGCGCGAGCTCCGGCGGACCGGGCG
TGGCGTCGGCGCAGGTTCGTGATTATGTGTTGCGCTCGCCTAAAGAAAGA
GAACGAGCGAAGCTCCGGGAAAGAAAAGAAAAGGAAGAACGAAAAACGGC
GGGCTGGAGGGGTAGTGGTAGTACAGGACTCCAGTGGCACCTCCGATGGT
GAGCGTGAAGGGCAGGACCGGGGGGGTGCCAAGGACAACTTCGACAGCGT
GGTGGCGTGGCTGGTTGGGCTGTCAGAGGAGGGGCTGTTTCGGACCGTCG
TGGGGTTTCTGTGA