mRNA_Ecto-sp13_S_contig10096.124.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10096.124.1
Unique Name	mRNA_Ecto-sp13_S_contig10096.124.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10096.124.1 vs. uniprot
Match: A0A6H5LKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKS3_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 2.610e-54
Identity = 95/104 (91.35%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 AMVPLEALSNELQDLYGRGSLELEVLQGHVLSDNAVDGLVEFYEQNVPIQAKESSVVGQSMAEIDLAAKRHAKVGQKGKGGDGALLGQWGDHAEDGSDHAEKQV 314
            AMVPLEALSNELQDLYGRG+LELEVLQGHVLSDNAVDGLVEFYE+NVPIQAKESSVVGQSMAEIDLAAKRH  VGQKG  GD ALLGQWGDHAE G+DHAEKQV
Sbjct:  123 AMVPLEALSNELQDLYGRGALELEVLQGHVLSDNAVDGLVEFYEKNVPIQAKESSVVGQSMAEIDLAAKRHVNVGQKGNRGDEALLGQWGDHAEVGTDHAEKQV 226

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10096.124.1 vs. uniprot
Match: D8LJD7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD7_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 6.500e-34
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 3

Query:  108 VDGLVEFYEQNVPIQAKESSVVGQSMAEIDLAAKRHAKVGQKGKGGDGALLGQWGDHAEDGSDHAEKQV 314
            VDGLVEFYEQNVPIQAKESSVVGQSMAEIDLAAKRH KVGQKGKGGDGALLGQWGDH EDG+DHAEKQV
Sbjct:  429 VDGLVEFYEQNVPIQAKESSVVGQSMAEIDLAAKRHVKVGQKGKGGDGALLGQWGDHGEDGNDHAEKQV 497

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10096.124.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10096.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5LKS3_9PHAE	2.610e-54	91.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LJD7_ECTSI	6.500e-34	95.65	C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig10096	contig	Ecto-sp13_S_contig10096:434..1711 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	134.8
Seed ortholog evalue	2.3e-29
Seed eggNOG ortholog	2880.D8LJD7
Preferred name	DZIP1
Model size	314
KEGG ko	ko:K16470
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001568,GO:0001578,GO:0001944,GO:0001947,GO:0002009,GO:0003006,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007507,GO:0008104,GO:0008150,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010638,GO:0010646,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019222,GO:0019953,GO:0021536,GO:0021983,GO:0021984,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030510,GO:0030900,GO:0031175,GO:0031290,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034451,GO:0034504,GO:0034613,GO:0035050,GO:0035082,GO:0035239,GO:0035270,GO:0035295,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045185,GO:0045724,GO:0045995,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051098,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051220,GO:0051234,GO:0051235,GO:0051239,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0060429,GO:0060491,GO:0060562,GO:0061371,GO:0061512,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0080090,GO:0090092,GO:0090287,GO:0097485,GO:0097539,GO:0097730,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902017,GO:1902115,GO:1902117,GO:1903506,GO:1905330,GO:2000026,GO:2000027,GO:2000112,GO:2000223,GO:2000826,GO:2001141
Exons	3
EggNOG free text desc.	Zinc finger protein
EggNOG OGs	28IYV@1,2QRAI@2759
Ec32 ortholog description	C2H2 zinc finger protein
Ec32 ortholog	Ec-17_001930.1
Cds size	309
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462507.1690068-CDS-Ecto-sp13_S_contig10096:433..589	1681462507.1690068-CDS-Ecto-sp13_S_contig10096:433..589	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10096 434..589 -
1681462507.1875634-CDS-Ecto-sp13_S_contig10096:1042..1093	1681462507.1875634-CDS-Ecto-sp13_S_contig10096:1042..1093	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10096 1043..1093 -
1681462507.1959195-CDS-Ecto-sp13_S_contig10096:1604..1706	1681462507.1959195-CDS-Ecto-sp13_S_contig10096:1604..1706	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10096 1605..1706 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462507.2042046-UTR-Ecto-sp13_S_contig10096:1706..1711	1681462507.2042046-UTR-Ecto-sp13_S_contig10096:1706..1711	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig10096 1707..1711 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10096.124.1	prot_Ecto-sp13_S_contig10096.124.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig10096 434..1706 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10096:434..1711-
coding sequence from alignment at Ecto-sp13_S_contig10096:434..1711-

protein sequence of mRNA_Ecto-sp13_S_contig10096.124.1

>prot_Ecto-sp13_S_contig10096.124.1 ID=prot_Ecto-sp13_S_contig10096.124.1|Name=mRNA_Ecto-sp13_S_contig10096.124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MVPLEALSNELQDLYGRGSLELEVLQGHVLSDNAVDGLVEFYEQNVPIQA
KESSVVGQSMAEIDLAAKRHAKVGQKGKGGDGALLGQWGDHAEDGSDHAE
KQV

mRNA from alignment at Ecto-sp13_S_contig10096:434..1711-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10096.124.1 ID=mRNA_Ecto-sp13_S_contig10096.124.1|Name=mRNA_Ecto-sp13_S_contig10096.124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10096:434..1711- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAATGGTCCCTCTAGAGGCGTTGTCAAACGAACTCCAAGACCTGTAT
GGCAGGGGGTCCTTAGAATTGGAGGTGCTGCAAGGGCACGTACTATCCGA
CAACGCGGTGAGGGCAAGCTCAAGGCTCAAAGTTCTTCGTACGGCATTAG
ACCTGTAGAACATCCATGTATTCGGAGACGTCGGCACAAGACCCCACCTA
GCCCGCTGGAAAGGGCACTACTAACTACAGTTAGGTACAGAGGAGAAAGA
AACATTGGTTCTTCGAGTACCAGAAACCAAGTGGACGTTAGGGCTACGAA
ACCCATCACATATTCAACGGTTGGGTCAGACAAGGGAACCTGTGCCAGAG
TGTGCGAGATCTCAAAACCATCGCACACACTGTTCCAAAATAGGCTCCAC
GTTTTGCAGTTCTACGATGCATGATTTGCAGATGAGAGAGCCCTTTCGAC
TGTCCAGTGCCTCACAACGTGTCTGACTTGCTTATTTTGCTGTCTCCAAT
TCTTCGTCTGCCATTTCCGAATATTTGATAGATACGCGTGCACCTTGACG
CTATTTATAGATGTTGCTCGCTGAGTCACACTTGATGATCACGATGATTT
TCATTTTTGTTTCATCAGGTGGACGGACTGGTCGAATTCTACGAGCAGAA
TGTGCCAATTCAAGCCAAGGTACGCGAGAAAGGCATTTCATTAAGCACAT
CACCCTTATCGCATTGTATGGTTCACTCTCGTCGCGTCTGTTGGGGCTCC
TGAAGTAGACTATATGCGGATTTGAAGACTGGTTCGGGGGGGCCACGCCA
GTTCAACAACAAAGCGTATATACGTGTGTACCAAACCCAGGTCTCCCCGC
GTGGGCGTCCCTGAACCCGTGCTGGTCGTTCCTCTTGCTCCTCGAATGAG
GTCAACGCTCCAGGCAGTGTGTACAAACATTCCAAATCTGCCGTGCATCG
ATAGTGACAACTTTCGCAGTTTGGTGCTTGTGTTGGTAACCTTTCTTTCC
GAGCGCATAGGAAATACTCGCGGTATTAGCTATTGAGGTGTTCACTGCAC
ATTTGCCTTTGTTGCTTTCGCGAGACCGTGGGCGGTAACAACATGCGGTT
TGCAATCCTCCTCGTTTCACAGGAGTCTTCGGTGGTGGGACAGTCTATGG
CCGAGATCGATTTGGCTGCCAAACGGCATGCCAAAGTCGGCCAGAAGGGG
AAGGGGGGCGACGGTGCTTTACTGGGACAATGGGGAGATCATGCCGAAGA
CGGCAGTGACCACGCCGAAAAGCAGGTC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10096:434..1711-

>mRNA_Ecto-sp13_S_contig10096.124.1 ID=mRNA_Ecto-sp13_S_contig10096.124.1|Name=mRNA_Ecto-sp13_S_contig10096.124.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10096:434..1711- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCCTCTAGAGGCGTTGTCAAACGAACTCCAAGACCTGTATGGCAG
GGGGTCCTTAGAATTGGAGGTGCTGCAAGGGCACGTACTATCCGACAACG
CGGTGGACGGACTGGTCGAATTCTACGAGCAGAATGTGCCAATTCAAGCC
AAGGAGTCTTCGGTGGTGGGACAGTCTATGGCCGAGATCGATTTGGCTGC
CAAACGGCATGCCAAAGTCGGCCAGAAGGGGAAGGGGGGCGACGGTGCTT
TACTGGGACAATGGGGAGATCATGCCGAAGACGGCAGTGACCACGCCGAA
AAGCAGGTC