mRNA_Ecto-sp13_S_contig1140.1228.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1140.1228.1
Unique NamemRNA_Ecto-sp13_S_contig1140.1228.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1140.1228.1 vs. uniprot
Match: A0A6H5JKQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.910e-23
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 2 
Query:  326 GVDSAGHGRAGTGAAQPSPGVASCHRLSGSVGTGEKSGLTRSL*EEEADWGQGVSTTTRRCVLMWVKGTAVS-RSP 550
            GV SAGHGRAGTGAAQ S GVA  HRLSGSVG GEKS L RSL EEEA  G GVS+  +RCVLMW KGTAVS R+P
Sbjct:   22 GVVSAGHGRAGTGAAQSSSGVAGHHRLSGSVGMGEKSELARSLWEEEAHGGHGVSSIKKRCVLMWAKGTAVSGRTP 97
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BLAST of mRNA_Ecto-sp13_S_contig1140.1228.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.290e-17
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 3 
Query:  120 YSCVRGTNDVKAQKGYRRYLRTLLTRYCASWALARSVLQKFNVRGNLRMIVKNRGSPVALRGHCIEYHVELIQRATD 350
            Y CVRGTNDV+   GY RYLRTLL  YCAS ALA+SVL +FN R NL+M+VKNRG P  L  H  ++ VE+IQRAT+
Sbjct:  694 YRCVRGTNDVE---GYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRATE 767
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BLAST of mRNA_Ecto-sp13_S_contig1140.1228.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.530e-14
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 3 
Query:  120 YSCVRGTNDVKAQKGYRRYLRTLLTRYCASWALARSVLQKFNVRGNLRMIVKNRGSPVALRGHCIEYHVELIQRATDGLAPELPNPR-PEWPAAID 404
            + CVRGTN  +   GY RYLR LL+ YCAS ALA SVL +FN R N+RM VKNRG P  +     +Y  E+IQR T    P+  NP  PEW +A+D
Sbjct:   57 HRCVRGTNCTE---GYHRYLRRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTASWYPD--NPLFPEWVSALD 147
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BLAST of mRNA_Ecto-sp13_S_contig1140.1228.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.270e-14
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 3 
Query:  126 CVRGTNDVKAQKGYRRYLRTLLTRYCASWALARSVLQKFNVRGNLRMIVKNRGSPVALRGHCIEYHVELIQRATDGLAPELPNPRPEWPAAIDSV 410
            CVRGTN  +   GY RYLR LL+ YCAS +LA SVL +FN R N+RM VKNRG P  +     ++ +E+IQR T    P+ P   PEW +A+D+ 
Sbjct:  329 CVRGTNCTE---GYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPL-FPEWVSALDAA 419
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BLAST of mRNA_Ecto-sp13_S_contig1140.1228.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.990e-14
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 3 
Query:  126 CVRGTNDVKAQKGYRRYLRTLLTRYCASWALARSVLQKFNVRGNLRMIVKNRGSPVALRGHCIEYHVELIQRATDGLAPELPNPRPEWPAAIDSV 410
            CVRGTN  +   GY RY+R LL+ YCAS +LA SVL +FN R N+RM VKNRG P  +     ++ +E+IQR T    P+ P   PEW +A+D+ 
Sbjct:  332 CVRGTNCTE---GYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPL-FPEWVSALDAA 422
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BLAST of mRNA_Ecto-sp13_S_contig1140.1228.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.500e-7
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 3 
Query:  126 CVRGTNDVKAQKGYRRYLRTLLTRYCASWALARSVLQKFNVRGNLRMIVKNRGSPVALRGHCIE-YHVELIQRATDGLAPELP 371
            CVRGTN  +   GY R L  LL+ YCAS ALA S+L +F  R N++M VKN    +   G C + + +E+IQR T    P+ P
Sbjct:  351 CVRGTNSTE---GYHRLLLRLLSTYCASPALAHSILLEFKHRWNIKMAVKNLSKEI---GGCFDQFDIEIIQRETTSWDPDCP 427
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BLAST of mRNA_Ecto-sp13_S_contig1140.1228.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.050e-5
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:  186 LLTRYCASWALARSVLQKFNVRGNLRMIVKNRGSPVALRGHCIEYHVELIQRAT 347
            LL+ YCAS ALA S+L +FN R N++M VKNR  P  + G   ++ +E+IQR T
Sbjct:   84 LLSTYCASPALAHSILLEFNHRWNIKMAVKNRNLPKEIGGCFDQFDIEIIQRET 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1140.1228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JKQ6_9PHAE6.910e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3Q9_ECTSI1.290e-1763.643'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K9U3_9PHAE1.530e-1452.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE3.270e-1449.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK9_9PHAE6.990e-1448.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM2_9PHAE1.500e-744.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP32_9PHAE6.050e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1140contigEcto-sp13_S_contig1140:15089..16560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score93.6
Seed ortholog evalue7.6e-17
Seed eggNOG ortholog2880.D7G3Q9
Preferred nameWRN
Model size772
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons2
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
Cds size402
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.3145707-UTR-Ecto-sp13_S_contig1140:15088..152011681462597.3145707-UTR-Ecto-sp13_S_contig1140:15088..15201Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1140 15089..15201 +
1681462597.34613-UTR-Ecto-sp13_S_contig1140:16303..165601681462597.34613-UTR-Ecto-sp13_S_contig1140:16303..16560Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1140 16304..16560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462597.3253014-CDS-Ecto-sp13_S_contig1140:15201..152401681462597.3253014-CDS-Ecto-sp13_S_contig1140:15201..15240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1140 15202..15240 +
1681462597.3340223-CDS-Ecto-sp13_S_contig1140:15940..163031681462597.3340223-CDS-Ecto-sp13_S_contig1140:15940..16303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1140 15941..16303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1140.1228.1prot_Ecto-sp13_S_contig1140.1228.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1140 15202..16303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1140.1228.1

>prot_Ecto-sp13_S_contig1140.1228.1 ID=prot_Ecto-sp13_S_contig1140.1228.1|Name=mRNA_Ecto-sp13_S_contig1140.1228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MAYSCVRGTNDVKAQKGYRRYLRTLLTRYCASWALARSVLQKFNVRGNLR
MIVKNRGSPVALRGHCIEYHVELIQRATDGLAPELPNPRPEWPAAIDSVA
QWARARRVGSPGAYRRKRPTGGREFPRRRGVAC*
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mRNA from alignment at Ecto-sp13_S_contig1140:15089..16560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1140.1228.1 ID=mRNA_Ecto-sp13_S_contig1140.1228.1|Name=mRNA_Ecto-sp13_S_contig1140.1228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1472bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1140:15089..16560+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAGGCTGGTTTACCGCTGCAGCTCCGCACCGTGCGGGACGGTTGCTT
GGGTGTTCCTGACCGAGAAGCGATGTACTACGTCGTTGGCAAGAGCATGG
ATGGCCTTCCCGAATGGCGTACAGTTGCGTCCGAGGCACCAACGATGTCA
AGGTGAGACCTACATACCTTGCTTCATGGAAGCACAGTTAGCGTGTTTCC
GTGTGTACCGAGCAGGCCTGGATATCATGTTACACTTCAGCAATGTAGTC
TACTCCATTCTTAGGCTGGGTGGACATATGTCTTCCAACCCGTGTCTTCT
CTTCCAAGAGTGTTTTGTTGGGTTTTTCGTTCGCAGCAGACCTCTCACCA
TCACTACAGCGTGCTCCCTCCCTGATGGTCGGATCGCCACGAAACCTTGA
AGGCTGTACGCGCCACAACTGTACGTGTCCCTTGCGTCTGTTGTGATTGC
TGTGGGTCCCGCTTGGGCCGAGAAATGTTAATCCATGTGTGAGCAAAGGC
AACAATCCGTGTGCATAGGCTTATTCTTGAGCGGTTAATTAAACATGTCC
GCTACTCTCTGTCTTGGTTTGCGGAGGAGGGTGTGCACTGGTGTGCATAC
AGCAGCAGTAAAGGTGTACCAGTACGGCAATAGCGTAAACGCGGGTTGTG
TGGTATGCTGGTGGAGGCCAGCCCCAACCGTTGCTCTGTATGACAAGAAT
AATGTCTTTATGTCATGTCCAACGCTCTCGAACTGATCAAGTGTATCTCG
TGTGTGAGTTCTGTGCGCTCTGCGGTCGTTTTTGCATCCGGTCAGAACTC
AACATTATTACTCGTCTTCATAATTCTTCGCGCCCCACCCGCTGCCCACA
AGGCACAAAAAGGTTATCGCCGATACTTGCGCACCCTGCTGACCCGCTAC
TGCGCATCGTGGGCACTAGCGCGTTCGGTGTTGCAGAAGTTCAACGTCCG
GGGAAACTTGAGGATGATCGTGAAGAACCGTGGCTCGCCCGTGGCGTTGA
GAGGGCACTGCATCGAGTACCATGTGGAGTTGATTCAGCGGGCCACGGAC
GGGCTGGCACCGGAGCTGCCCAACCCTCGCCCGGAGTGGCCAGCTGCCAT
CGACTCAGTGGCTCAGTGGGCACGGGCGAGAAGAGTGGGCTCACCCGGAG
CCTATAGGAGGAAGAGGCCGACTGGGGGCAGGGAGTTTCCACGACGACGA
GGCGTTGCGTGCTGATGTGGGTGAAAGGTACCGCTGTCAGCCGATCCCCG
CTGTCGCATCTCACACTTTTCTCCGAGCGATGCACGGCAATGAGGGGCGA
CACAATGCTAGAACGAGGGTCTACGTCAGGGAGGACAAGCACCAGGCGCT
TCTGGAAGCGGAGTCAACATGAGGGGGGATTCTGCTCAACCAGTGATGCT
TGGGGAGGCCCGTGGAACCATCGTGCGACCGGGTTCAGAAGAAAGCTGTA
CCTCGGGTTCCAGTCTAATGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1140:15089..16560+

>mRNA_Ecto-sp13_S_contig1140.1228.1 ID=mRNA_Ecto-sp13_S_contig1140.1228.1|Name=mRNA_Ecto-sp13_S_contig1140.1228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1140:15089..16560+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTACAGTTGCGTCCGAGGCACCAACGATGTCAAGGCACAAAAAGG
TTATCGCCGATACTTGCGCACCCTGCTGACCCGCTACTGCGCATCGTGGG
CACTAGCGCGTTCGGTGTTGCAGAAGTTCAACGTCCGGGGAAACTTGAGG
ATGATCGTGAAGAACCGTGGCTCGCCCGTGGCGTTGAGAGGGCACTGCAT
CGAGTACCATGTGGAGTTGATTCAGCGGGCCACGGACGGGCTGGCACCGG
AGCTGCCCAACCCTCGCCCGGAGTGGCCAGCTGCCATCGACTCAGTGGCT
CAGTGGGCACGGGCGAGAAGAGTGGGCTCACCCGGAGCCTATAGGAGGAA
GAGGCCGACTGGGGGCAGGGAGTTTCCACGACGACGAGGCGTTGCGTGCT
GA
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