mRNA_Ecto-sp13_S_contig100938.123.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100938.123.1
Unique NamemRNA_Ecto-sp13_S_contig100938.123.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: D8LRQ0_ECTSI (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.810e-27
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK
Sbjct:   58 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 107
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A7S3M735_9STRA (Signal peptidase I n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M735_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.590e-22
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL N D+P+RAGE+VVFKIKDR+IPIVHRVM VHEK
Sbjct:   57 SGSMEPAFQRGDILFLTNQDDPIRAGEIVVFKIKDRDIPIVHRVMKVHEK 106
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A835Z4U9_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A835Z4U9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.670e-22
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL+N D+P+R GEVVVFKIKDR+IPIVHR+M VHEK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRIMKVHEK 106
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A7S0SWE0_9STRA (Signal peptidase I n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWE0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.670e-22
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL+N D+P+R GE+VVFKIKDR+IPIVHRVM VHEK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVMKVHEK 106
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A6V1QND9_HETAK (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QND9_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 5.310e-22
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL N  +P+RAGEVVVFKIKDREIPIVHRVM VHEK
Sbjct:   58 SGSMEPAFQRGDILFLTNHQDPIRAGEVVVFKIKDREIPIVHRVMKVHEK 107
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: F0YAE9_AURAN (Signal peptidase I n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0YAE9_AURAN)

HSP 1 Score: 91.7 bits (226), Expect = 6.850e-22
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL+N D P+R GEVVVFKIKDR+IPIVHRVM VHEK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDNPIRVGEVVVFKIKDRDIPIVHRVMKVHEK 106
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A7S2RVP6_9STRA (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVP6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.160e-22
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL+N D+P+R GEVVVFKIKDR+IPIVHRV+ VHEK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRVLKVHEK 106
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A482SSB0_9ARCH (Signal peptidase complex catalytic subunit SEC11C n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSB0_9ARCH)

HSP 1 Score: 86.3 bits (212), Expect = 2.910e-21
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   10 MEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            MEPAFQRGDILFL N D P+RAGE+VVFKIKDR+IPIVHRVM VHEK
Sbjct:    1 MEPAFQRGDILFLTNHDNPIRAGEIVVFKIKDRDIPIVHRVMKVHEK 47
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: W7TFR1_9STRA (Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFR1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.000e-21
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL+N D+P+R GE+VVFKIKDR+IPIVHRV+ VH+K
Sbjct:   58 SGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQK 107
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BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Match: A0A7S1U989_9STRA (Signal peptidase complex catalytic subunit SEC11C n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U989_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.200e-20
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL N D P+R GE+VVFKIKDR+IPIVHRV  VHEK
Sbjct:   58 SGSMEPAFQRGDILFLSNHDSPIRVGEIVVFKIKDRDIPIVHRVTKVHEK 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100938.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ0_ECTSI2.810e-27100.00Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S3M735_9STRA2.590e-2286.00Signal peptidase I n=1 Tax=Spumella elongata TaxID... [more]
A0A835Z4U9_9STRA3.670e-2284.00Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A7S0SWE0_9STRA3.670e-2284.00Signal peptidase I n=1 Tax=Chromulina nebulosa Tax... [more]
A0A6V1QND9_HETAK5.310e-2288.00Signal peptidase complex catalytic subunit SEC11C ... [more]
F0YAE9_AURAN6.850e-2286.00Signal peptidase I n=3 Tax=Pelagomonadales TaxID=5... [more]
A0A7S2RVP6_9STRA7.160e-2284.00Signal peptidase complex catalytic subunit SEC11C ... [more]
A0A482SSB0_9ARCH2.910e-2185.11Signal peptidase complex catalytic subunit SEC11C ... [more]
W7TFR1_9STRA3.000e-2180.00Signal peptidase I n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S1U989_9STRA1.200e-2082.00Signal peptidase complex catalytic subunit SEC11C ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100938contigEcto-sp13_S_contig100938:167..319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score99.4
Seed ortholog evalue4.9e-19
Seed eggNOG ortholog2880.D8LRQ0
Preferred nameSEC11C
Model size153
KEGG koko:K10686,ko:K13280
KEGG Pathwayko03060,ko04120,map03060,map04120
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0031090,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
Exons1
EggNOG free text desc.signal peptide processing
EggNOG OGsCOG0681@1,KOG3342@2759
EC3.4.21.89,6.2.1.45
Cds size144
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462507.1096952-CDS-Ecto-sp13_S_contig100938:166..3101681462507.1096952-CDS-Ecto-sp13_S_contig100938:166..310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100938 167..310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462507.123191-UTR-Ecto-sp13_S_contig100938:310..3191681462507.123191-UTR-Ecto-sp13_S_contig100938:310..319Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig100938 311..319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100938.123.1prot_Ecto-sp13_S_contig100938.123.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100938 167..310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100938.123.1

>prot_Ecto-sp13_S_contig100938.123.1 ID=prot_Ecto-sp13_S_contig100938.123.1|Name=mRNA_Ecto-sp13_S_contig100938.123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK*
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mRNA from alignment at Ecto-sp13_S_contig100938:167..319-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100938.123.1 ID=mRNA_Ecto-sp13_S_contig100938.123.1|Name=mRNA_Ecto-sp13_S_contig100938.123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100938:167..319- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGTCTATGGAGCCAGCGTTTCAGCGTGGAGATATTCTCTTCCTCCA
CAATGGGGATGAACCTCTTCGGGCGGGCGAGGTAGTTGTCTTCAAGATTA
AGGACAGGGAGATTCCGATCGTTCACAGGGTGATGAACGTTCACGAAAAG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100938:167..319-

>mRNA_Ecto-sp13_S_contig100938.123.1 ID=mRNA_Ecto-sp13_S_contig100938.123.1|Name=mRNA_Ecto-sp13_S_contig100938.123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100938:167..319- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCAGCGTTTCAGCGTGGAGATATTCTCTTCCTCCACAATGGGGA
TGAACCTCTTCGGGCGGGCGAGGTAGTTGTCTTCAAGATTAAGGACAGGG
AGATTCCGATCGTTCACAGGGTGATGAACGTTCACGAAAAGTGA
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