mRNA_Ecto-sp13_S_contig114.1223.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig114.1223.1
Unique NamemRNA_Ecto-sp13_S_contig114.1223.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: D7FJK8_ECTSI (rRNA biogenesis protein RRP36 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJK8_ECTSI)

HSP 1 Score: 501 bits (1290), Expect = 2.810e-173
Identity = 282/293 (96.25%), Postives = 287/293 (97.95%), Query Frame = 1 
Query:  613 MRKRAEMLPSDDEVSGQSSGEEASDNDSWDDEDLDEIEAATEEQPSKEQGESIGERLIKLSHGTGPSRRKRHIRDNTGGEQKQASAAKTARDRARSGIAAHQQARGGDSGSGRTKAPSRANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQK 1491
            MRKRAEM PSDDEV+GQSSGEEASDNDSWDDEDLDE EAATEEQP+KEQGESIGERLIKLSHG GPSRRKRHIRD+TGGEQKQA+AAKTARDR RSGIAAHQQARGG+SGSGRTK PSRANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAER QGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQK
Sbjct:    1 MRKRAEMQPSDDEVNGQSSGEEASDNDSWDDEDLDENEAATEEQPNKEQGESIGERLIKLSHGAGPSRRKRHIRDSTGGEQKQANAAKTARDRTRSGIAAHQQARGGNSGSGRTKVPSRANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERSQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQK 293
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BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: A0A835YP85_9STRA (rRNA biogenesis protein RRP36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP85_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.570e-45
Identity = 99/182 (54.40%), Postives = 133/182 (73.08%), Query Frame = 1 
Query:  961 PSRANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQ------ERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKRQ 1488
            P RANKN+P E SS+RAVGR REVV  +R+ +RDPRF+   G+  LNYD+FRK+Y FL  YQD EI+ L+K   K K +      ER+   +ALLT++QQERAER + D TR A+ + +K E EAVA GK P+F+K  +++ L+LE RYE L+ +GK+ KF++KKRK+NAAKD RW+P+KRQ
Sbjct:  175 PKRANKNQPMEMSSKRAVGRHREVVEVRRRRARDPRFDAATGT--LNYDMFRKSYEFLEGYQDGEIDALRKEAAKAKKRRGDGSAERAAAAKALLTKMQQERAERKRADATRAALSQRRKAEAEAVAKGKAPYFMKARDRRALALETRYEELRREGKVQKFVQKKRKRNAAKDRRWMPAKRQ 354
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BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: T0S1H5_SAPDV (rRNA biogenesis protein RRP36 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S1H5_SAPDV)

HSP 1 Score: 164 bits (414), Expect = 2.200e-43
Identity = 92/173 (53.18%), Postives = 129/173 (74.57%), Query Frame = 1 
Query:  967 RANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 1485
            RANKN P+E +S+R V RFREV+  ++K SRDPRF+   G  KLN D+F+KAY FL  Y+D+E++E+KK LKK K+  R   L+  L   +QERAE ++ D+ R A ++ K++EREAVA+GK  F+LK  +KK++ L+ +Y+ L+E G+LSKFM K+RKKNA KDHRWLP++R
Sbjct:   46 RANKNCPREMTSKRPVARFREVLQIRKKASRDPRFDAASG--KLNEDLFKKAYTFLEDYKDAELDEVKKQLKKAKSATRKAALKEELASRKQERAETHRADKIREATQKRKREEREAVANGKSAFYLKRKDKKQVELKAKYDELQESGRLSKFMAKRRKKNANKDHRWLPTQR 216
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BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: A0A1V9YXH6_9STRA (rRNA biogenesis protein RRP36 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXH6_9STRA)

HSP 1 Score: 162 bits (410), Expect = 6.910e-43
Identity = 91/173 (52.60%), Postives = 130/173 (75.14%), Query Frame = 1 
Query:  967 RANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 1485
            RANKN P+E +S+R V RFREV+  ++K SRDPRF+   G  KLN D+F+K+Y FL  Y+D+E++++KK L+K K++ R   L+A L   +QERAE ++ DR R A  + K++EREAVA+GK  F+LK  +KK++ L+ +Y+ L+E G+LSKFM K+RKKNA KDHRWLP++R
Sbjct:   42 RANKNCPREMTSKRPVARFREVLQIRKKGSRDPRFDNASG--KLNEDLFKKSYAFLEDYKDAELDDVKKQLRKAKSKTRREELKADLATRKQERAESHRADRIREATLKRKREEREAVANGKSAFYLKRKDKKQIELKAKYDELQESGRLSKFMAKRRKKNANKDHRWLPTQR 212
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BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: A0A2P4X8B4_9STRA (rRNA biogenesis protein RRP36 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4X8B4_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.030e-41
Identity = 90/173 (52.02%), Postives = 126/173 (72.83%), Query Frame = 1 
Query:  967 RANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 1485
            RANKN+P E SS+RAVGRFR+VV  K+K   DPRFE   G  +LN D+F K+Y FL  Y+  E++ELK+ LKK KN  +   L+  +   QQE  E+ + ++ ++A+ + K++EREAVASGK  F+LK  +KK+L L+ +++ L+E G+LSKFM KKRKKNA+KDHRWLP++R
Sbjct:   46 RANKNQPLELSSKRAVGRFRQVVEVKKKRVLDPRFEAQSG--RLNEDLFNKSYAFLDEYKQRELQELKQQLKKTKNMTKKDELKHEIALRQQEMTEKNKQEKIKSALTKRKREEREAVASGKGAFYLKRKDKKKLELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQR 216
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BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: A0A662WCQ7_9STRA (rRNA biogenesis protein RRP36 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WCQ7_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.550e-41
Identity = 88/173 (50.87%), Postives = 126/173 (72.83%), Query Frame = 1 
Query:  967 RANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 1485
            RANKNRP E +S+RAVGRF++VV  K++   DPRFE   G  +LN D+F K+Y FL  Y+  E+ ELK+ LK  K+  R   ++  ++   QER+E+ + ++ R A+ + K++EREAVASGK PF+LK  +KK+L L+ +++ L+E G+LSKFM KKRKKNA+KDHRWLP++R
Sbjct:   58 RANKNRPMELTSKRAVGRFKQVVEVKKRRVLDPRFEAQSG--RLNEDLFAKSYSFLDEYKQRELGELKRQLKSAKSTTRKEEIKHEISLRSQERSEKQKTEKIRDALTKRKREEREAVASGKNPFYLKRKDKKKLELQAKFQNLQETGRLSKFMAKKRKKNASKDHRWLPTQR 228
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BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: A0A7S2Y0G1_9STRA (rRNA biogenesis protein RRP36 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G1_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.180e-40
Identity = 100/188 (53.19%), Postives = 125/188 (66.49%), Query Frame = 1 
Query:  967 RANKNRPQEASSRRAVGRFREVVV---------TKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSG-----RLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKP-FFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 1485
            R NKNRP E SS+  VGR+R+V V          ++   RDPRFEG  G  K+NYD+FRK Y FL  YQDSEI+ L+  LKK + + +SG      +Q  L +L+QER++R +GDR R  +   KK ER AV  GKK  F+LKG  KK + LEQRY+ LKE G+L KFMEKKRKKNA+KDHRWLP+ R
Sbjct:   34 RENKNRPVERSSKVPVGRYRDVAVRPGDGSQSTAQKYQPRDPRFEGVSG--KMNYDLFRKTYQFLEQYQDSEIQALEAELKKAQKKSKSGAERVSEVQLALQKLRQERSQRVRGDRVRGVLGAHKKLERRAVQQGKKKAFYLKGKAKKEIVLEQRYQELKEKGQLKKFMEKKRKKNASKDHRWLPAAR 219
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BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: G4YS32_PHYSP (rRNA biogenesis protein RRP36 n=4 Tax=Phytophthora TaxID=4783 RepID=G4YS32_PHYSP)

HSP 1 Score: 156 bits (394), Expect = 1.370e-40
Identity = 88/173 (50.87%), Postives = 127/173 (73.41%), Query Frame = 1 
Query:  967 RANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 1485
            RANKN+P E SS+RAVGRFR+VV  K++ + DPRFE   G  +LN D+F K+Y FL  Y+  E++ELK+ LKK K+  +   L+  +   QQE  E+ + ++ ++A+ + K++EREAVASGK  F+LK  +KK+L L+ +++ L+E G+LSKFM KKRKKNA+KDHRWLP++R
Sbjct:   44 RANKNQPLELSSKRAVGRFRQVVEVKKRRALDPRFEAQSG--RLNEDLFNKSYAFLDDYKQRELQELKQQLKKTKSVTKKDELKHEIALRQQEMTEKQKTEKIKSALTKRKREEREAVASGKGAFYLKRKDKKKLELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQR 214
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BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: A0A3R7A8U5_9STRA (rRNA biogenesis protein RRP36 n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A8U5_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.520e-40
Identity = 90/173 (52.02%), Postives = 128/173 (73.99%), Query Frame = 1 
Query:  967 RANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 1485
            RANKNRP+E +S+R VGRFREV+  ++KT+RDPRF+   G  KLN D+F+K+Y FL   +++E++E KK LK  K++ R   LQ  ++  +QE AE  + DR R A  + K++EREAV +GK  F+LK  +KK+L L+ +++ L+E G+LSKFMEK+RKKNA KDHRWLP++R
Sbjct:   81 RANKNRPREITSKRPVGRFREVLQVRKKTTRDPRFDHASG--KLNEDLFKKSYAFLDDIKEAELQEAKKQLKHAKSKTRKTELQQDISSRKQELAEAKRADRIRDANLKRKREEREAVENGKGAFYLKRKDKKQLELKAKFDELQESGRLSKFMEKRRKKNANKDHRWLPTQR 251
[Close]
BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Match: A0A3M6VW06_9STRA (rRNA biogenesis protein RRP36 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VW06_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.780e-40
Identity = 88/173 (50.87%), Postives = 126/173 (72.83%), Query Frame = 1 
Query:  967 RANKNRPQEASSRRAVGRFREVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKSLKKEKNQERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVASGKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLPSKR 1485
            RANKN+P E SS+RAVGRFR+VV  K+K   DPRFE   G  +LN D+F K+Y FL  Y+  E+++LK+ LKK K+  +   L+  +   QQE  E+ + D+ ++A+ + K++EREAVASGK  F+LK  +KK++ L+ +++ L+E G+LSKFM KKRKKNA+KDHRWLP++R
Sbjct:   45 RANKNQPLELSSKRAVGRFRQVVEVKKKRLLDPRFEAQSG--RLNEDLFNKSYAFLDEYKQRELQQLKQQLKKTKSVAKKDELKHEIALRQQEMTEKQKRDKIQSALTKRKREEREAVASGKGAFYLKRKDKKKVELQAKFQDLQETGRLSKFMAKKRKKNASKDHRWLPTQR 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig114.1223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJK8_ECTSI2.810e-17396.25rRNA biogenesis protein RRP36 n=2 Tax=Ectocarpus T... [more]
A0A835YP85_9STRA1.570e-4554.40rRNA biogenesis protein RRP36 n=1 Tax=Tribonema mi... [more]
T0S1H5_SAPDV2.200e-4353.18rRNA biogenesis protein RRP36 n=2 Tax=Saprolegnia ... [more]
A0A1V9YXH6_9STRA6.910e-4352.60rRNA biogenesis protein RRP36 n=1 Tax=Achlya hypog... [more]
A0A2P4X8B4_9STRA2.030e-4152.02rRNA biogenesis protein RRP36 n=2 Tax=Phytophthora... [more]
A0A662WCQ7_9STRA5.550e-4150.87rRNA biogenesis protein RRP36 n=2 Tax=Nothophytoph... [more]
A0A7S2Y0G1_9STRA1.180e-4053.19rRNA biogenesis protein RRP36 (Fragment) n=1 Tax=F... [more]
G4YS32_PHYSP1.370e-4050.87rRNA biogenesis protein RRP36 n=4 Tax=Phytophthora... [more]
A0A3R7A8U5_9STRA1.520e-4052.02rRNA biogenesis protein RRP36 n=6 Tax=Aphanomyces ... [more]
A0A3M6VW06_9STRA3.780e-4050.87rRNA biogenesis protein RRP36 n=1 Tax=Peronospora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig114contigEcto-sp13_S_contig114:16830..20988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score512.7
Seed ortholog evalue1.2e-142
Seed eggNOG ortholog2880.D7FJK8
Preferred nameRRP36
Model size1744
KEGG rclassRC00031
KEGG koko:K00025,ko:K03035,ko:K10408,ko:K14771,ko:K14795
KEGG ReactionR00342,R07136
KEGG Pathwayko00020,ko00270,ko00620,ko00630,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko03050,ko04964,ko05016,ko05169,map00020,map00270,map00620,map00630,map00710,map01100,map01110,map01120,map01130,map01200,map03050,map04964,map05016,map05169
KEGG ModuleM00009,M00011,M00012,M00168,M00171,M00341
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000469,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:1901360,GO:1990904
Exons8
EggNOG free text desc.cleavage involved in rRNA processing
EggNOG OGsKOG3190@1,KOG3190@2759
Ec32 ortholog descriptionProtein of unknown function DUF947
Ec32 orthologEc-04_006480.1
EC1.1.1.37
Cds size918
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03051,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig114.1223.1prot_Ecto-sp13_S_contig114.1223.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig114 17406..20738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.723396-UTR-Ecto-sp13_S_contig114:16829..174051681462596.723396-UTR-Ecto-sp13_S_contig114:16829..17405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig114 16830..17405 +
1681462596.8420043-UTR-Ecto-sp13_S_contig114:20738..209881681462596.8420043-UTR-Ecto-sp13_S_contig114:20738..20988Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig114 20739..20988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.7388449-CDS-Ecto-sp13_S_contig114:17405..175881681462596.7388449-CDS-Ecto-sp13_S_contig114:17405..17588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 17406..17588 +
1681462596.7501774-CDS-Ecto-sp13_S_contig114:18135..182521681462596.7501774-CDS-Ecto-sp13_S_contig114:18135..18252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 18136..18252 +
1681462596.7623956-CDS-Ecto-sp13_S_contig114:18823..189401681462596.7623956-CDS-Ecto-sp13_S_contig114:18823..18940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 18824..18940 +
1681462596.7759666-CDS-Ecto-sp13_S_contig114:19123..191901681462596.7759666-CDS-Ecto-sp13_S_contig114:19123..19190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 19124..19190 +
1681462596.7927322-CDS-Ecto-sp13_S_contig114:19420..195571681462596.7927322-CDS-Ecto-sp13_S_contig114:19420..19557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 19421..19557 +
1681462596.8023148-CDS-Ecto-sp13_S_contig114:19903..199531681462596.8023148-CDS-Ecto-sp13_S_contig114:19903..19953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 19904..19953 +
1681462596.8174229-CDS-Ecto-sp13_S_contig114:20290..204281681462596.8174229-CDS-Ecto-sp13_S_contig114:20290..20428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 20291..20428 +
1681462596.8312652-CDS-Ecto-sp13_S_contig114:20629..207381681462596.8312652-CDS-Ecto-sp13_S_contig114:20629..20738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig114 20630..20738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig114.1223.1

>prot_Ecto-sp13_S_contig114.1223.1 ID=prot_Ecto-sp13_S_contig114.1223.1|Name=mRNA_Ecto-sp13_S_contig114.1223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=306bp
MNLNTRDLGEERMRKRAEMLPSDDEVSGQSSGEEASDNDSWDDEDLDEIE
AATEEQPSKEQGESIGERLIKLSHGTGPSRRKRHIRDNTGGEQKQASAAK
TARDRARSGIAAHQQARGGDSGSGRTKAPSRANKNRPQEASSRRAVGRFR
EVVVTKRKTSRDPRFEGGGGSSKLNYDIFRKAYGFLGTYQDSEIEELKKS
LKKEKNQERSGRLQALLTRLQQERAERYQGDRTRTAIREAKKKEREAVAS
GKKPFFLKGSEKKRLSLEQRYEGLKEDGKLSKFMEKKRKKNAAKDHRWLP
SKRQK*
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mRNA from alignment at Ecto-sp13_S_contig114:16830..20988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig114.1223.1 ID=mRNA_Ecto-sp13_S_contig114.1223.1|Name=mRNA_Ecto-sp13_S_contig114.1223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig114:16830..20988+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGCAGTACTATAATAAAGCCAATGGGGACAGTTTTGGGACATTGTG
GGGACACAGCACTCGAATTGCCTATTTACCTTACCGTAGTCACCCGAGGC
CCCGCTGTGTGCAACGCATGTGAGAACCCTTGGTCTATCATGCTTGCCTG
AGGTGGTACGCTGTGTGATATGACGTGTGATACCTCTCCTCGGCCTCTGA
CTTGCTGTACACATCTCCCAACCCGCGCCCCCCCCAGGTCCTGAAACTGC
TGTACATCGCCTGGTACTGGAAAAGTTTGCTGACTTAGCCTCAGTATGAA
AACGGCCCCCACGTGTTTTTTGGGGACTCTTGTTATTCTGAGCGAGGTCA
CCCGTTGTCTGACAAGGAGCTCAGATTATTTGGAGGGATTCTAGCCCCTC
GACCAATGGCTGACAAACGAATTTGCGACATTTTTTTTTGTCGAGGGACT
GGGTACTAGTCTAGCTGTTCGCGCTAGCCCTCTGCTCCGAATGAATGGGG
TCGGTTGCCCGCACAACGAGTGGTCCTTCAATGCTGCGACCTTTTTCGCG
TGCGTGTGGCCACAGAGAAGAGAGCGATGAATCTCAACACACGAGACTTG
GGAGAGGAACGGATGAGGAAAAGGGCCGAGATGCTTCCTTCTGATGATGA
GGTCAGCGGTCAAAGCAGTGGAGAGGAGGCCTCCGACAACGACAGCTGGG
ACGATGAGGACTTGGACGAAATTGAAGCCGCGACGGAAGAGCAGCCAAGC
AAGGAGCAGGTCCGTAGCACTTCCGGAACGTACTCGAAGAGCAGCACCAT
TTTTTTGTTGTCTACAGGAATGTATCAGTAGTTATTCCAAGACGGAGGCT
CAGTCAGAGGAACGAGGATTCGGAGAGGTTGAGTCTTCTTGGTCACGTCA
AACCTCTCATGCCCTCAGAGCGGAAGAATGTGGTGTAGGGTTAGGGTGAC
ATACCAATGCTTGGGCGATGTTACGTTTTACGGTATTTTTGAGTACGCTT
CATTTGCGGCAACTGTTGTATAACCCTAAGTAAACTTGTACTTCAGTAGG
TGATGAACCTCTTCCACGTATTGCAGTCGTTAGTGGGAGTAATCTTCTTC
GTGAATCTGCACGCGCTTGCGTTTTCTTACACAACGCGTGACGTGCCACG
TCAATGATGGGTCGGTATGTCTTGATTCACGACACGCCGACAGATTGAAC
GCATTGAGACTTTCATTAAATCAGCCGGTAAGCGCGGTCGATTCTATTAG
TAAAGACACACACACAACGCAACTACGTACCATACCCGCCCTTTTTCCGT
GTACAGGGAGAGTCAATTGGCGAGCGTCTCATCAAACTGTCGCATGGAAC
CGGGCCATCAAGGCGAAAACGCCACATTAGAGACAACACGGGAGGGGAGC
AAAAACAAGCGAGCGCCGCAAAGGTATGGTGTGCCGTGGTTTGAACGCGC
GTACAGAACGCTAATTACAGTCCTGGAGCTAGGTATCAGCAATCGGCAGA
GAGAGTTAGAGGGCAGGTTTGTATTTCCAGCCGGTGGTATGGGCCAGGAA
CAACATCAACGTACCCATCAGCAACGAAAAAAGTAATGTTCGAGATTACG
TCCGCAGTTTAGAGAGGCTGTACTAAAACAGGATATCGCTGGACTGCTTG
GTTTGTTTGTATTTGGCAGGCTCTCAAGTAAATGGAACATAAACCCACCT
CCATTCCCGGCCGCGATGCATTTTTGATCGAAGACGTCCTCACCAGATGC
GTGACATATATGTATGCTGATTGTAGACAATGTTCAACAGAATATGGGAG
CTATTTTCTCGACAGTTTAGTTCTTACGTCGTGGTTTTGTCTGGCTCCCC
TTAAAACACTGTGAGCACACGACATCAGTCGCGAATGTTGTACTGTTTGA
GGTACTCTACACAGCTGTGTGGGCACTACGTTTATTCTGAAGCACATAAT
ATGGTTCGGGGCGACTTTCGCGACGCGTTCTTGTGGCCCAACAGACGGCA
CGGGATCGCGCACGCTCCGGCATTGCTGCTCACCAGCAGGCAAGAGGGGG
GGATTCGGGATCCGGCCGTACCAAGGCGCCAAGTCGAGCCAACAAGAACA
GACCTCAAGAGGTGAGGTTCATGCCTATGAAATCAAATGACTTGAGGGCG
CACACCACGCGCGACAAACGGCAGAGCTAACTTGCAGGGAATGGTGGCCT
TGTGTGGCCTCTGACGTAGTGTCTCACATGTTTTTGTAAAACCTTGGACC
AGTTTCTCAAATGCTCAGTGTCCATCTGTCGTGTCGATTTCCAGGCATCG
TCTCGGCGGGCGGTCGGGCGATTCCGAGAAGTGGTCGTGACCAAGCGCAA
GACATCTAGAGGTATGTGGCTCGACGCTCTCTTGCACCGACTCGGGGTAG
GACCGGACCCGATTCCAAAATATATTGAAATATTTAGTCAAGTGACCGGC
TATTGTCAGGCAAGCTGATGGTGTTCTCTGGCGGCGTCCGTGCCTGCACC
TACGTCCTGTGGATTCGTGCAGGTTGCAGGACTTGAGTCGTTCCCTGTGC
CCGTCCATTTGCGTGTCGTACCACGAAATGTTCTGTGGCAGATCCACGAT
TCGAGGGCGGAGGGGGGTCCAGCAAGCTTAACTATGATATTTTCCGAAAG
GCATACGGCTTTCTTGGGACGTATCAGGACAGCGAAATCGAAGAACTGAA
AAAGTCTCTGAAGAAAGAGAAAAACCAGGTGAGTTAGTTATCCCAACAAC
CCATCACACGGCGAGGATCTGCTCTTTCCTGACGACTCCACATCGAGACT
CGGGCTGAAACGTCATCCAGTCGGCCCTTGTATTGCTTGTTCGTTGGGCT
CGCTTGGAGGCCTTCGACACATGGCTCAGACTCCGACATGTATTTGCAGG
GGAGCATGAATTGGAGTGCTCCAATAAGAACTTCAAGGGGTCCTGTCATC
CACAACCTCATCTTGTGCCATGAGTCCCTCCGGTGTGCGGCATCCAACCC
AATCGACCCAGTTTGCGACCGTTTTACCCCGCCACACGTCCGCCTGCTTT
CTCGATTGGTTTTCATCCCTCCAGGAGCGTTCTGGTAGACTGCAGGCACT
CTTGACCCGTCTTCAGCAAGAAAGGTAGGTAAATCCATGCATACGACCTA
ACTTCCCTGTCGTTTGGCATTTTTCTGGGCAGATTTGCATGTCCACTTTA
ATTCCAGAGGGAGAAATTGTTGCAAAAGTAGTCGGAAAACGTCCCCTTAC
TTGCGAACGCGTTGTTCGAACGCTGGTAGACGTTGATGATATCAAGTCTG
ACGAATACACCGTACGCTTACCCCGTTGCAGATGTTCAGGTGCTCATCAC
GTTCAGGCATTGTTTCGGTTTAAGTGTGAATTGGCAAGTACGTTACGCTA
TGTTGGTAACCTTTCGTGGATTCTGACGGCTCTAGCATTCGACACCTCGT
TGCTTGTTCAGGGCGGAACGATATCAAGGCGATCGGACGCGCACGGCAAT
TCGTGAGGCAAAGAAGAAGGAGCGCGAAGCCGTTGCCAGTGGGAAAAAGC
CATTTTTCCTCAAGGGCAGTGAGAAGAAAAGGCTGTCTCTCGAGCAAAGG
TGTGATCAGTATGGCAAGTTGTCTGTCACTCTCGCACGCTGAACAATGCA
CAGTTTTGAGAACCTCCGGTGCTATCGAGACCAGGTATTGTTTCCCCCAT
CCGCTCTGGAGAGAGCAACGCCCTGGTGGACGGGAGTGCTTTTATTCCCC
TGGTAGTGTCGGTCGGTAGCTGACGCTCTCGGACCTTCCTTCTCCGACAG
GTACGAGGGACTAAAGGAGGACGGCAAGCTGTCCAAGTTCATGGAAAAGA
AGAGGAAGAAGAATGCGGCCAAGGACCACCGATGGCTTCCAAGCAAACGC
CAAAAGTGATATCACGTGTGGGCGACACAAGTTCATCCAAGCGTGGTTCA
GGATTACAGTATTACCCTGCTGGCAAATGCTTATAACACATTCTTGGTTG
CGATTTGTTGCTCCTTCTCTGTGGGCATTTGTATTTCTTAGCAGAAAACG
GGGGCTCCGGCGTCACGCCGAATGCAGTCGTAGTCGATTACCGTCATTCG
GAGTTGTGCAGGGGAACGAGGGACAAATCAACTAATTCCTCGTCATAAAG
CTCAACCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig114:16830..20988+

>mRNA_Ecto-sp13_S_contig114.1223.1 ID=mRNA_Ecto-sp13_S_contig114.1223.1|Name=mRNA_Ecto-sp13_S_contig114.1223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig114:16830..20988+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATCTCAACACACGAGACTTGGGAGAGGAACGGATGAGGAAAAGGGC
CGAGATGCTTCCTTCTGATGATGAGGTCAGCGGTCAAAGCAGTGGAGAGG
AGGCCTCCGACAACGACAGCTGGGACGATGAGGACTTGGACGAAATTGAA
GCCGCGACGGAAGAGCAGCCAAGCAAGGAGCAGGGAGAGTCAATTGGCGA
GCGTCTCATCAAACTGTCGCATGGAACCGGGCCATCAAGGCGAAAACGCC
ACATTAGAGACAACACGGGAGGGGAGCAAAAACAAGCGAGCGCCGCAAAG
ACGGCACGGGATCGCGCACGCTCCGGCATTGCTGCTCACCAGCAGGCAAG
AGGGGGGGATTCGGGATCCGGCCGTACCAAGGCGCCAAGTCGAGCCAACA
AGAACAGACCTCAAGAGGCATCGTCTCGGCGGGCGGTCGGGCGATTCCGA
GAAGTGGTCGTGACCAAGCGCAAGACATCTAGAGATCCACGATTCGAGGG
CGGAGGGGGGTCCAGCAAGCTTAACTATGATATTTTCCGAAAGGCATACG
GCTTTCTTGGGACGTATCAGGACAGCGAAATCGAAGAACTGAAAAAGTCT
CTGAAGAAAGAGAAAAACCAGGAGCGTTCTGGTAGACTGCAGGCACTCTT
GACCCGTCTTCAGCAAGAAAGGGCGGAACGATATCAAGGCGATCGGACGC
GCACGGCAATTCGTGAGGCAAAGAAGAAGGAGCGCGAAGCCGTTGCCAGT
GGGAAAAAGCCATTTTTCCTCAAGGGCAGTGAGAAGAAAAGGCTGTCTCT
CGAGCAAAGGTACGAGGGACTAAAGGAGGACGGCAAGCTGTCCAAGTTCA
TGGAAAAGAAGAGGAAGAAGAATGCGGCCAAGGACCACCGATGGCTTCCA
AGCAAACGCCAAAAGTGA
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