mRNA_Ecto-sp13_S_contig10093.122.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10093.122.1
Unique NamemRNA_Ecto-sp13_S_contig10093.122.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10093.122.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.140e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 KTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAI 180
            KTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAI
Sbjct:  195 KTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAI 254
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BLAST of mRNA_Ecto-sp13_S_contig10093.122.1 vs. uniprot
Match: K0S2D5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2D5_THAOC)

HSP 1 Score: 56.2 bits (134), Expect = 1.570e-8
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   10 RESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWI 171
            R++V +G DYWID  E+++ KA     AK     + +Q K+KAEIV PYKQNWI
Sbjct:   45 RDAVEQGLDYWIDEEEINKSKARESRPAKTSKRSRMSQDKLKAEIVAPYKQNWI 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10093.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR40_ECTSI3.140e-32100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K0S2D5_THAOC1.570e-850.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10093contigEcto-sp13_S_contig10093:2320..3065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score122.9
Seed ortholog evalue5.2e-26
Seed eggNOG ortholog2880.D7FR40
Model size182
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2D131@1,2SGIC@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003600.1
Cds size180
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462507.062038-CDS-Ecto-sp13_S_contig10093:2319..23761681462507.062038-CDS-Ecto-sp13_S_contig10093:2319..2376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10093 2320..2376 +
1681462507.0719974-CDS-Ecto-sp13_S_contig10093:2940..30631681462507.0719974-CDS-Ecto-sp13_S_contig10093:2940..3063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10093 2941..3063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10093.122.1prot_Ecto-sp13_S_contig10093.122.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10093 2320..3063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10093.122.1

>prot_Ecto-sp13_S_contig10093.122.1 ID=prot_Ecto-sp13_S_contig10093.122.1|Name=mRNA_Ecto-sp13_S_contig10093.122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
KTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVN
PYKQNWILAI
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mRNA from alignment at Ecto-sp13_S_contig10093:2320..3065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10093.122.1 ID=mRNA_Ecto-sp13_S_contig10093.122.1|Name=mRNA_Ecto-sp13_S_contig10093.122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10093:2320..3065+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGACGGACCGCGAGAGCGTGCTGAGGGGGGAGGACTACTGGATCGACTA
TCGCGAGGTAAGGCGAACAACCTGTAGCTGGTGTTGTTGATGTTTGACCG
CTAGGTATTTCTGTGCAAATGCTGCTGTAAGGGAACTATGATAACATTAC
TGTTGTGGTTGAGGTTTGGCCTCCCTTAGGCTTGTACATTCGCGCCCCGA
AGCTTAAGCTTTTGTTTTTTCCTTTGAAAAAAAAAACACACACACACAGA
AAAAGTCCCTTTTATGAGCTTTTTCAGCGAAGACTTCACTGTAGAGACTT
CAAACCATCCCCTTCGACTGTTATGATGTCTTGAACGGGTTGCTTTTTTT
CGGTTGAATATGTGCCTCTTTTTGATTGGATGTGTAGTTATCAAGAATGG
TAAGACAACGTGACGTGAAGAGAGAAACAAGGGTCGCGTAATTTTGCGAC
CCGCTTGACCACGCCTACGAACACCAGCGAGACTACTTATTCGGCCGTGA
CTTCGGCGGATGAGCTTATCGACGGTTTCACGCGAGCAATCAGCGCTTAT
TTGGGGAGAGACTTCGACATTTCGCTTGCGGCCGTGGCTGTTGCTACCCC
TCCCCACGTGTGTGTGCGCAGGTTGACCGAAAGAAGGCGATACGCGAAGC
GAAGGCGAAAGCTCCCGCTCCGGACCAGTTCGCGCAGTCCAAGATGAAGG
CGGAGATAGTCAACCCGTACAAGCAGAACTGGATCCTCGCCATCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10093:2320..3065+

>mRNA_Ecto-sp13_S_contig10093.122.1 ID=mRNA_Ecto-sp13_S_contig10093.122.1|Name=mRNA_Ecto-sp13_S_contig10093.122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10093:2320..3065+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGACGGACCGCGAGAGCGTGCTGAGGGGGGAGGACTACTGGATCGACTA
TCGCGAGGTTGACCGAAAGAAGGCGATACGCGAAGCGAAGGCGAAAGCTC
CCGCTCCGGACCAGTTCGCGCAGTCCAAGATGAAGGCGGAGATAGTCAAC
CCGTACAAGCAGAACTGGATCCTCGCCATC
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