mRNA_Ecto-sp13_S_contig100895.120.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100895.120.1
Unique NamemRNA_Ecto-sp13_S_contig100895.120.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100895.120.1 vs. uniprot
Match: A0A6H5L4Q1_9PHAE (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q1_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.020e-54
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 RKCLPTVVGGTCAVCSKDVCAQCSLFYAVRLCGHCARARRASLPSELHRIVDATGGAPEKDPVETGGEAAPCL*GSVQTSVAIAESRCPLPPHGSKH 291
            RKCLPTVVGGTCAVCSKDVCAQCSLFYAVRLCGHCARA +ASLPSELHRIVDATGGAPEK P ETGG+A  CL GSVQ+S+AIAE+RC LPPHGSK+
Sbjct:   25 RKCLPTVVGGTCAVCSKDVCAQCSLFYAVRLCGHCARAHKASLPSELHRIVDATGGAPEKYPAETGGKAVSCLHGSVQSSMAIAENRCALPPHGSKY 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100895.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4Q1_9PHAE1.020e-5486.60Cysteine-rich DPF motif domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100895contigEcto-sp13_S_contig100895:206..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size294
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462506.9882932-UTR-Ecto-sp13_S_contig100895:205..2771681462506.9882932-UTR-Ecto-sp13_S_contig100895:205..277Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig100895 206..277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462507.0012805-CDS-Ecto-sp13_S_contig100895:277..4991681462507.0012805-CDS-Ecto-sp13_S_contig100895:277..499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100895 278..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100895.120.1prot_Ecto-sp13_S_contig100895.120.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100895 278..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100895.120.1

>prot_Ecto-sp13_S_contig100895.120.1 ID=prot_Ecto-sp13_S_contig100895.120.1|Name=mRNA_Ecto-sp13_S_contig100895.120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
RKCLPTVVGGTCAVCSKDVCAQCSLFYAVRLCGHCARARRASLPSELHRI
VDATGGAPEKDPVETGGEAAPCL*
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mRNA from alignment at Ecto-sp13_S_contig100895:206..499-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100895.120.1 ID=mRNA_Ecto-sp13_S_contig100895.120.1|Name=mRNA_Ecto-sp13_S_contig100895.120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100895:206..499- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAAATGCCTCCCAACGGTGGTCGGAGGGACGTGCGCTGTTTGCTCCAA
GGATGTGTGCGCTCAGTGTAGCTTGTTCTACGCCGTGAGGCTCTGCGGCC
ACTGCGCGCGAGCGCGCAGGGCAAGCTTGCCCTCGGAACTGCATCGCATC
GTGGACGCGACGGGAGGGGCACCGGAGAAAGACCCTGTAGAGACGGGGGG
GGAGGCTGCGCCGTGCCTCTAAGGCAGCGTTCAAACGTCTGTGGCAATCG
CGGAGAGTCGTTGTCCGCTACCACCACACGGCTCGAAGCATAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100895:206..499-

>mRNA_Ecto-sp13_S_contig100895.120.1 ID=mRNA_Ecto-sp13_S_contig100895.120.1|Name=mRNA_Ecto-sp13_S_contig100895.120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100895:206..499- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAAAATGCCTCCCAACGGTGGTCGGAGGGACGTGCGCTGTTTGCTCCAA
GGATGTGTGCGCTCAGTGTAGCTTGTTCTACGCCGTGAGGCTCTGCGGCC
ACTGCGCGCGAGCGCGCAGGGCAAGCTTGCCCTCGGAACTGCATCGCATC
GTGGACGCGACGGGAGGGGCACCGGAGAAAGACCCTGTAGAGACGGGGGG
GGAGGCTGCGCCGTGCCTCTAA
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