mRNA_Ecto-sp13_S_contig11284.1144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11284.1144.1
Unique NamemRNA_Ecto-sp13_S_contig11284.1144.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11284.1144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11284contigEcto-sp13_S_contig11284:4458..5431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size494
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462590.132715-CDS-Ecto-sp13_S_contig11284:4457..45531681462590.132715-CDS-Ecto-sp13_S_contig11284:4457..4553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11284 4458..4553 +
1681462590.1430597-CDS-Ecto-sp13_S_contig11284:5033..53481681462590.1430597-CDS-Ecto-sp13_S_contig11284:5033..5348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11284 5034..5348 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462590.1516604-UTR-Ecto-sp13_S_contig11284:5348..54311681462590.1516604-UTR-Ecto-sp13_S_contig11284:5348..5431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11284 5349..5431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11284.1144.1prot_Ecto-sp13_S_contig11284.1144.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11284 4458..5348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11284.1144.1

>prot_Ecto-sp13_S_contig11284.1144.1 ID=prot_Ecto-sp13_S_contig11284.1144.1|Name=mRNA_Ecto-sp13_S_contig11284.1144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
GDAVEAVSPPPAAAGVEQEEGEDGDAESVGEEISPPRVRTAVRRLRRDAG
VRGPGKRKRQTTANELRDYGPHRHRWNRRTPHVSCVCCVGEGMESLRSQK
NVLAATFYSAPPSTAITLPPLVGNESFTQILVCLRP*
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mRNA from alignment at Ecto-sp13_S_contig11284:4458..5431+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11284.1144.1 ID=mRNA_Ecto-sp13_S_contig11284.1144.1|Name=mRNA_Ecto-sp13_S_contig11284.1144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=974bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11284:4458..5431+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGATGCCGTGGAAGCTGTATCGCCGCCGCCGGCCGCGGCGGGGGTCGA
GCAGGAAGAAGGAGAAGACGGTGACGCAGAATCTGTGGGGGAAGAGGTGC
GCCGAGTTTTTGGTTGGCGTGTGTTTGTGCGTGTGCTTTTGCCCGGAAAA
GGTAGCCTAGCGGGGTGGTGTGTGTAAGTGGCGGTTGACTCGCCGACGCG
GGTAGTGCTTGCTCGCTGCAGATAGAAAGAAGCATGCGTTGTTTTGTCTT
CGGGAGGAATGACCGAAAACGACTGCTTTTGTGCCCGACGTCGTTCTCAG
GCGCCTTGAATTTTTTTCGTGTATTTCCAACGACCGGCGACTTGAAGAGG
GACTCGCATACACCTACTAAACAGAAATTTCGCAGGGTGTTTTTGGTGCA
GAAATAAATCAATCAACCCCGGGCGGTTCGTAGGGGCGGACATGAATATA
TGTCGTGTGTGTGTGGTATTTTTATGGATGCATACACCGGTTGCTCGGAC
GAGGGTAGCTTTTTCTGCATTTGCAATCTACGGCAGCGCATCCTCTTTCA
ACTACTTGCTCGGTTTCGACGGGTAGATATCGCCGCCACGAGTACGAACT
GCTGTGCGTCGTCTCAGGAGGGATGCGGGAGTGAGGGGTCCAGGAAAAAG
AAAGAGGCAGACGACAGCAAACGAGCTGCGTGATTATGGACCCCACCGAC
ACCGCTGGAATCGGAGGACGCCGCACGTATCTTGTGTCTGTTGTGTAGGC
GAAGGAATGGAATCCCTCCGCTCCCAGAAAAATGTGCTAGCAGCAACATT
TTATAGTGCTCCCCCCTCCACCGCCATCACCCTGCCGCCTCTTGTAGGGA
ACGAAAGCTTCACTCAAATCTTAGTTTGTTTGCGTCCCTAAAACTGCAAA
AATGAACAAAAAGCATCGCTGTATTGTGCGCTGCTCGGGGAGTTGTAGAG
GCGCCGGTTGGTCATCGTCATCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11284:4458..5431+

>mRNA_Ecto-sp13_S_contig11284.1144.1 ID=mRNA_Ecto-sp13_S_contig11284.1144.1|Name=mRNA_Ecto-sp13_S_contig11284.1144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11284:4458..5431+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGATGCCGTGGAAGCTGTATCGCCGCCGCCGGCCGCGGCGGGGGTCGA
GCAGGAAGAAGGAGAAGACGGTGACGCAGAATCTGTGGGGGAAGAGATAT
CGCCGCCACGAGTACGAACTGCTGTGCGTCGTCTCAGGAGGGATGCGGGA
GTGAGGGGTCCAGGAAAAAGAAAGAGGCAGACGACAGCAAACGAGCTGCG
TGATTATGGACCCCACCGACACCGCTGGAATCGGAGGACGCCGCACGTAT
CTTGTGTCTGTTGTGTAGGCGAAGGAATGGAATCCCTCCGCTCCCAGAAA
AATGTGCTAGCAGCAACATTTTATAGTGCTCCCCCCTCCACCGCCATCAC
CCTGCCGCCTCTTGTAGGGAACGAAAGCTTCACTCAAATCTTAGTTTGTT
TGCGTCCCTAA
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