mRNA_Ecto-sp13_S_contig11276.1136.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11276.1136.1
Unique NamemRNA_Ecto-sp13_S_contig11276.1136.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11276.1136.1 vs. uniprot
Match: D7FU55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU55_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 2.140e-71
Identity = 130/170 (76.47%), Postives = 139/170 (81.76%), Query Frame = 3 
Query:  606 RMEQHQHQYPPGWTKNFKNAFTKSSGRKLLLMAKDLEKMYAYVEDTTASALIFYASLRFGGTTPALLASLAAGAAASSVVXXXXXSVLSAGTTCADMRDIDSG---GTTSVPGDRTDEATWTLFIYIVSIGVVMVMAWIVRQSPLWVLLNLFFWADSRSRSRSRRKVSSG 1106
            R +QH HQYPPGWTK+FKN FTKSSGRKLLLMAKDLEKMYAYVE TTASALIFY SLRFGG TPALLASL  GAAASS V     S LSAGTT ADM DI SG   GTTSVPGDRTD+ATWTL ++I+SIGV MV+AWIV  SPLWVLLNL  WA+S S  RSRR+ SSG
Sbjct:   44 RQQQHLHQYPPGWTKSFKNVFTKSSGRKLLLMAKDLEKMYAYVEGTTASALIFYGSLRFGGKTPALLASLVTGAAASSFVSAASTSGLSAGTTSADMSDIGSGKKGGTTSVPGDRTDDATWTLLVWIISIGVAMVVAWIVWLSPLWVLLNLLVWAESMS--RSRRRGSSG 211
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BLAST of mRNA_Ecto-sp13_S_contig11276.1136.1 vs. uniprot
Match: A0A6H5KZU3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZU3_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.680e-50
Identity = 97/122 (79.51%), Postives = 103/122 (84.43%), Query Frame = 3 
Query:  606 RMEQHQHQYPPGWTKNFKNAFTKSSGRKLLLMAKDLEKMYAYVEDTTASALIFYASLRFGGTTPALLASLAAGAAA-SSVVXXXXXSVLSAGTTCADMRDIDSGGTTSVPGDRTDEATWTLF 968
            + +QH HQ+P GWTK+FKN FTKSSGRKLLLMAKDLEKMYAYVEDTTA+AL+FYASLRFGG TPALLASL  GAAA SSVV     S LS GTT ADM DI S GTTSVPGDRTDEATWTLF
Sbjct:  174 QQQQHLHQHPSGWTKSFKNVFTKSSGRKLLLMAKDLEKMYAYVEDTTAAALVFYASLRFGGKTPALLASLVTGAAAASSVVSANSTSSLSPGTTSADMSDIGSSGTTSVPGDRTDEATWTLF 295
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BLAST of mRNA_Ecto-sp13_S_contig11276.1136.1 vs. uniprot
Match: D7FNC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC7_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.440e-24
Identity = 75/151 (49.67%), Postives = 92/151 (60.93%), Query Frame = 3 
Query:  636 PGWTKNFKNAFTKSSGRKLL---LMAKDLEKMYAYVEDTTAS-ALIFYASLRFGGTTPALLASLAAGAAASSVVXXXXXSVLSAGTTCADMRDIDSGGTTSVPGDRTDEATWTLFIYIVSIGVVMVMAWIVRQSPLWVLLNLFFWADSRSR 1076
            P  T+  KN FTK+S  ++    L+ K  EK+Y +  DTTAS AL +++SLRFGG TPALLA+L   A   SV      S LSAGTT AD   I S  TT VPGD  D+ATW LF  ++  G   V+A I++ S L VL  L FWA SRSR
Sbjct:   89 PDSTEAVKNFFTKTSAGRVFSRGLLTKGFEKLYTHAADTTASFALGYFSSLRFGGNTPALLATLVTAAGTLSVASAATTSCLSAGTTVAD---IGSRATTDVPGDLADDATWALFSLLMKFGGATVLARIMQISALSVLATLAFWATSRSR 236
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BLAST of mRNA_Ecto-sp13_S_contig11276.1136.1 vs. uniprot
Match: D7G964_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G964_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 8.880e-13
Identity = 73/188 (38.83%), Postives = 96/188 (51.06%), Query Frame = 3 
Query:  606 RMEQHQHQYPPGWTKNFKNAFTKSSGRKLLLMAK---------------DLEKMYAYVEDT-TASALIFYASLRFGGTTPALLASLAAGAAASSVVXXXXXSVLSAGT-TCADMRDIDSGGTTSVPGDR------TDEATWTLFIYIVSIGVVMVMAWIVRQSPLWV---LLNLFFWADSRSRSRSRR 1091
            RME  QHQ+PP W + F+    ++SGRKLL MAK                LEK++A+V DT TAS LI  ASLRFG     LL  +A G  +++  XXXX   +   T T + +  I+SGG T  PGD       TDE TWT F  I  +  +  +   +  S +W+         WA +R RSRS R
Sbjct:  220 RMEHQQHQHPPDWMRAFERFRPRTSGRKLLGMAKASAGSGGVVRRFMTKGLEKLHAHVADTATASVLIGCASLRFGSKAVLLLTLVAGGVRSAAXXXXXXTRTVGTQTNTTSSIEGINSGGWTCRPGDADCLSDDTDEKTWTWFEVITDVLALTTVLRFLWISAVWLGGTTTTCVMWARTR-RSRSTR 406
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11276.1136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FU55_ECTSI2.140e-7176.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZU3_9PHAE1.680e-5079.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FNC7_ECTSI3.440e-2449.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G964_ECTSI8.880e-1338.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11276contigEcto-sp13_S_contig11276:213..4284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1108
Hectar predicted targeting categorysignal peptide
Exons5
Cds size582
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11276.1136.1prot_Ecto-sp13_S_contig11276.1136.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11276 737..4284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462589.5817492-UTR-Ecto-sp13_S_contig11276:212..7361681462589.5817492-UTR-Ecto-sp13_S_contig11276:212..736Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11276 213..736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462589.5900269-CDS-Ecto-sp13_S_contig11276:736..9191681462589.5900269-CDS-Ecto-sp13_S_contig11276:736..919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11276 737..919 +
1681462589.5995016-CDS-Ecto-sp13_S_contig11276:1960..20251681462589.5995016-CDS-Ecto-sp13_S_contig11276:1960..2025Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11276 1961..2025 +
1681462589.609153-CDS-Ecto-sp13_S_contig11276:2593..27331681462589.609153-CDS-Ecto-sp13_S_contig11276:2593..2733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11276 2594..2733 +
1681462589.6190372-CDS-Ecto-sp13_S_contig11276:3624..37131681462589.6190372-CDS-Ecto-sp13_S_contig11276:3624..3713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11276 3625..3713 +
1681462589.6288261-CDS-Ecto-sp13_S_contig11276:4179..42841681462589.6288261-CDS-Ecto-sp13_S_contig11276:4179..4284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11276 4180..4284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11276.1136.1

>prot_Ecto-sp13_S_contig11276.1136.1 ID=prot_Ecto-sp13_S_contig11276.1136.1|Name=mRNA_Ecto-sp13_S_contig11276.1136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MMRFWRFLSISRCLHTCVLCREFRRPLRMEQHQHQYPPGWTKNFKNAFTK
SSGRKLLLMAKDLEKMYAYVEDTTASALIFYASLRFGGTTPALLASLAAG
AAASSVVSAASTSVLSAGTTCADMRDIDSGGTTSVPGDRTDEATWTLFIY
IVSIGVVMVMAWIVRQSPLWVLLNLFFWADSRSRSRSRRKVSSG
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mRNA from alignment at Ecto-sp13_S_contig11276:213..4284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11276.1136.1 ID=mRNA_Ecto-sp13_S_contig11276.1136.1|Name=mRNA_Ecto-sp13_S_contig11276.1136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11276:213..4284+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGAAGGGGATGTTACCGGTTGCAGTACAAAGCGTTGGCGGCAATTAGG
CTCCGCTGCGGTTGTTGGCCCGCAGGTGCTCGAGAGCACGCGGAGCATAG
GCGAGGAAACTCTCTCTCGAAAGCAGCAGCAGAACACGGGCTCTGTCGAG
GTACTGTCAAAGGCCAGTGGAAGCCGGTGTGTGTTGCTTCCCTCCAACGC
AGACGGTAGAGTTTTGGGCCTTCCGGGATTCTACCTTGAGCAGAAAGGGA
GTCAGGGTGTGTGTGTGTATGTGTGTGTGCACAGGGCAATGGTGAAGGAC
GGCACCCGCACACCGACCACGTTTCGATACCACCACCACCTTGGCAAACA
CCCGCCGTTGCCTTGGTCCAAGTCTTTCCCCTTACCTCCACCGCCGTAGA
CGCTGTCCTCCATTCTTCTCCTCCTCGTCGGAGGAACATAACCGCTCGGT
AGACGCAGCCGCAGTGGGTCGTGATCGGGATGTGCTCGTAGCTTACGGTA
GCCCTCGGTCCGAACACCACCCGGATGATGAGGTTTTGGAGGTTTCTGAG
CATTTCTCGTTGCCTGCACACGTGCGTGTTATGTCGTGAATTTCGTCGGC
CGCTTCGGATGGAGCAGCACCAGCACCAGTACCCGCCTGGCTGGACGAAG
AACTTCAAGAATGCTTTCACCAAGTCGAGTGGTCGCAAGCTCCTACTCAT
GGCCAAGGTGAGGCACGGCGAAGAGCGTTTATCGTGTGCGGGGCAGCTTT
TTCGGGGTTCGTTGTTGACCAAGGTAAAGTGCACAACGGTGTGCTAGATC
GAAGACTTTGTCGTGTTCATGCAGGCAGCTTGTTGGGGCAGTGAGCCTGT
TTGGTCGACTCTCGTCTCAGCCACCCACCGCCCCCGGTATTGGCGTAGAG
CGCGTAGTGTCTCGGCATATCGTCGGCACATTCTCCAAATCTGGAGCACT
ACAGGTAAAGAGTGTGCCCCTCGTGTGGGTAGGCAACTTGCGGAGTAGCC
GCAAGCGTGCTGGTAGGTTCGATCCCAGCCACGCTCCGTGGTCGTCGATG
GTGCCACAGAAATCTACCTCCTCCGTTAAATGGTCCTCCCCGCGGTATTG
TGCTAGGGATACTGGCCGAGGTAAGGAAGGGAGGACAGCAGAGACGATGA
ACTCGTTATCGTGTGCAGGCAGCTTTCCGGAGGTGTGTTGGTGACAGAGA
CCCCAGGTTTTCGGGTGGGTGCTATGTAAACAAGCCGATCTGACAAAAAT
CGACGTTGTGGCAATCGTTTCGTTATCGTCGTCCCGTTGCCGCGGGCGTA
TCGGTGCGCTCCTCCCTCTTGTCTTGCTGCCGCCTGTCTACCAAACGAGT
AGCAGCTGGAGCCCTATCACTTCGCGTTTGACAGTACCCCTTCGTTCAAA
GCAGTCGAGAGGGTGCGGGGTGTGTTCTCGCCGCCGTTCTTGCTTGCTTT
CCTTGCCGTGGACGATTCTAACTCGTTAGTTAAACTAAGGTTGGCTCTCA
ATTGGAGTGCGCCCCCTATGGAACACCCCCCGAGATAATTTTATTTTCGA
ACGTTCGAGGGGGAGGGGGTGGGGGGGGCACAACCACCCCACACCTGGGC
CGTGAGGTTCCTCCGGATACGCGCTCCTGGTATCGATATCAGCGCGTTTT
ACGGTGCATGCATGCCTTCACCCCCTTGATGTGCGCCCCAAACCAGTCGA
GTCAACCCCGCGTGTCTGTCACCTCGTTGATCTTCTGTCAATAACCAGGA
CTTGGAGAAGATGTACGCTTACGTCGAGGACACGACTGCCTCCGCGTTGA
TTTTCTATGCCAGGTGCGTTTTCGCGAACAGCGGAATTCATGTGCACTGA
GGATGTGCGTTACGACCGTGAAATCTTGGGCGGGAAAATTTGTTTTTCTT
GTCTGGCTGTAGATGTATGCGTGTGTGTTCGTGGGGGTGTCGAAGAGCTC
GGGCCAACAGAGTGCGCTGTGCACGAATTGGCTTCTTGTTGTACGCCGAA
GGGTATCACGCCTGTTCAAACCAGAGAGGAGCCTTTCGTGAGTGCAGGCA
CCCGAGCTCTGTCGCTGGTGTTGAGGCGCGCAGACCCGTTGCTTCTGCCC
TGGTCCGCCGGTCTGGTTCTCCCCGCCCTTGAAGCGGCGGCAACGAGGAG
GAAGAGGAGTTGTGGGTGTTGGCCGGTAGAGGCCGATGAGGCGAAAATTA
GCATGTCAATCAGATGCTACCACCGTTTCTTGCTGCTGCGCTCCTGCGCC
GCGCAATTATTGTCGTCCCCGTCCGTAATTACATCTTCAAACAACGTGTC
AACCAACTGCTGCCACTGCTTCTTGCTGCACTCTTGTGCCGCCTGTTGTC
TTCTTCGTCCGTCCGCTCGTTGTGGTGGCAGCCTTCGCTTCGGCGGTACA
ACGCCCGCGCTGCTGGCGTCTCTGGCGGCGGGGGCGGCGGCAAGCTCGGT
TGTGTCCGCCGCTTCGACCAGCGTCTTGTCGGCGGGGACGACATGCGCCG
ACATGCGCGACATCGACTCAGGCAAGAAGCTTGTCGCCAACGAGGAAGAA
GTTGATGACTTTCCACCCGTCCGCCCAACCACACACAGTGCTGTTCATGG
CGCAGCCGCCGTTAGCGGTGATGTTGAGAAGGTGGGACTGTTTTCACAGA
AACGGAGAATGAAGAAAATTCCTCGCGCATTCATTACACAGTAGGGGGGG
CGATATACGGCCGCCTAAAGTGGTGCCGCAGGATGTCACGGGCCTTCTTT
CGGGCAACCGCCACTATTCAGAGGATAGGATAGGAGTGGTCCCGCTATAG
TGCCGCTTGATCCCCTGTACACTGCCGGTAAACTCGTCTGGGATACACGA
AATATTCACGATGTTTCACACTTATGAAAAATACCGGTTGACCGCAAAAT
GCCGGTTCTAAAGGCTGGTACCTTCCATGCGGCATTTTACGGGGCCCACC
AGTGTATGAGACATGTTGATAATCTCAACTGTGTCAATCGCTTGCACCGA
CCTTAATTTCGGGCGACCGGTCTTATTCAGGGCCCCGTACTGTAGTACTG
TGCGTGTACGCCGTATCGAGACGCAACGTGTTCGCACTAGCGACCTCCCC
CCCCCGTTTGACCCCTCTACGCAGCAGTTCATTTACACTCTCGATTACGT
TGTGAATCACGCCGGTGGTTTCTTCGCCTCGTGCCGACAAAAAACGCGCC
GCCGCCCAACAACGCAGCAGCAGTCAATTACTTGGACTGGCCAAAAAGTA
TAATATCCAAATCTCAGAACCTTGGCCACAAGAACAAATGCTCAGTCAAG
GGGCCATATAAACAGACCCCGTCGGGGAATACTACATCGGCAAAAATACT
GGTGTTGACAAGTCGTGGTGGCCCTTTCTGTGTGCTCACGTACGTACGCG
ATGCCGTCACAGGTGGGACGACTTCCGTTCCTGGAGACCGCACCGACGAG
GCGACATGGACGTTGTTCATATATATCGTCTCCATCGGAGTGGTGATGGT
GGTAAGTATCCACGGGTCCCGCCCGTTTGTGATACCACTTGAATACATTT
CGATGAGGTGTTTTGTTGTACCGTTTATCACTGGAGTAAGACGTCACACG
CACCCTGGTCGGATTCACTTGCAATCAGTGAAAGACTACCCGTTAGAGGA
ATACGACGATGTACACGGACGGACCGACCGACTTGAGAAATTGAGTTCAT
GAGGAAATAGAACAGGCAGGGGGTATACACGCAGACCCTATCCCTATCTC
AACTTCCCCGATCGCATGCTTTGTCCAACATGTTTGCTTGAACAATGAGC
CCTTCGAAAGACTATCTACTACAGTGTAAAACAGGAGCTCCTCGTCATGA
CCACTCAAATGTTCGTTGTCGCGACCGCCGTGGGTGACCGCCGCCCCCCC
ACCCCCATCCTCGTTTCCGCGACCCGCGTTGTGGGTTGAACATCTGTCTG
GTGTGTCGTGGGCTCAGATGGCCTGGATTGTGCGGCAATCTCCCCTATGG
GTCTTGCTCAACCTCTTTTTCTGGGCGGACAGCAGGAGCAGGAGCAGGAG
CAGGAGGAAGGTGTCATCGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11276:213..4284+

>mRNA_Ecto-sp13_S_contig11276.1136.1 ID=mRNA_Ecto-sp13_S_contig11276.1136.1|Name=mRNA_Ecto-sp13_S_contig11276.1136.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11276:213..4284+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAGGTTTTGGAGGTTTCTGAGCATTTCTCGTTGCCTGCACACGTG
CGTGTTATGTCGTGAATTTCGTCGGCCGCTTCGGATGGAGCAGCACCAGC
ACCAGTACCCGCCTGGCTGGACGAAGAACTTCAAGAATGCTTTCACCAAG
TCGAGTGGTCGCAAGCTCCTACTCATGGCCAAGGACTTGGAGAAGATGTA
CGCTTACGTCGAGGACACGACTGCCTCCGCGTTGATTTTCTATGCCAGCC
TTCGCTTCGGCGGTACAACGCCCGCGCTGCTGGCGTCTCTGGCGGCGGGG
GCGGCGGCAAGCTCGGTTGTGTCCGCCGCTTCGACCAGCGTCTTGTCGGC
GGGGACGACATGCGCCGACATGCGCGACATCGACTCAGGTGGGACGACTT
CCGTTCCTGGAGACCGCACCGACGAGGCGACATGGACGTTGTTCATATAT
ATCGTCTCCATCGGAGTGGTGATGGTGATGGCCTGGATTGTGCGGCAATC
TCCCCTATGGGTCTTGCTCAACCTCTTTTTCTGGGCGGACAGCAGGAGCA
GGAGCAGGAGCAGGAGGAAGGTGTCATCGGGC
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