mRNA_Ecto-sp13_S_contig100807.112.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100807.112.1
Unique NamemRNA_Ecto-sp13_S_contig100807.112.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Match: D8LGI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGI8_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.570e-42
Identity = 91/109 (83.49%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 TNTVLVCAYCTH-VARFWQERKRNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQLESVYAAPXXXXXXXXXXXXXXPPSYHDFVGGVTQVHIQ 324
            T  V VC      +    +ERKRNAQRKINEVDAELLALTNVNVHR+FAISDSVSATNHDRRYTGTADPQ+ESVYAAPXXXXXXXXXXXXXXPP+YHDFVGGVTQVHIQ
Sbjct:  104 TAIVFVCTXXXXXLPELMKERKRNAQRKINEVDAELLALTNVNVHRNFAISDSVSATNHDRRYTGTADPQMESVYAAPXXXXXXXXXXXXXXPPNYHDFVGGVTQVHIQ 212
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BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Match: A0A6H5KZI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.800e-38
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:   52 QERKRNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQLESVYAAPXXXXXXXXXXXXXXPPSYHDFVGGVTQVHIQ 324
            +ER+RNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQ+ES YAAPXXXXXXXXXXXXXX    HDFVGGVTQVHIQ
Sbjct:   48 EERERNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQMESAYAAPXXXXXXXXXXXXXXXXXXHDFVGGVTQVHIQ 138
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BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Match: A0A6H5JSH8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSH8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.660e-36
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:   52 QERKRNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQLESVYAAPXXXXXXXXXXXXXXPPSYHDFVGGVTQVHIQ 324
            +ER+RNAQRKINEVDAELL LTNVNVHRSFAISDSVSATNHDRR TGT DPQ+ESVYAAPXXXXXXXXXX    PP+YHDFVGGVTQVHIQ
Sbjct: 1702 EERERNAQRKINEVDAELLTLTNVNVHRSFAISDSVSATNHDRRCTGTVDPQMESVYAAPXXXXXXXXXXRSAAPPNYHDFVGGVTQVHIQ 1792
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BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Match: D7FX07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX07_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.830e-27
Identity = 70/118 (59.32%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:   10 VLVCAYCTHVARFWQERKRNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQLESVYAA-------------PXXXXXXXXXXXXXXPPSYHDFVGGVTQVHIQ 324
            VL C  C  +    +E+KRNAQRKIN VDAELLALTNVNV R+FAISDSVSATN D R+TGTADP +ESVYAA              XXXXXXXX      PP YH+++  V QVH+Q
Sbjct:  193 VLTCCSCC-LPELMKEKKRNAQRKINVVDAELLALTNVNVRRNFAISDSVSATNEDHRFTGTADPHVESVYAAHPPVSTITTTAXXXXXXXXXXXATCPSAPPDYHEYMSSVKQVHVQ 309
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100807.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGI8_ECTSI1.570e-4283.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZI7_9PHAE1.800e-3891.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSH8_9PHAE3.660e-3687.91Integrase catalytic domain-containing protein n=1 ... [more]
D7FX07_ECTSI3.830e-2759.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100807contigEcto-sp13_S_contig100807:113..439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size327
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462506.4329376-CDS-Ecto-sp13_S_contig100807:112..4391681462506.4329376-CDS-Ecto-sp13_S_contig100807:112..439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100807 113..439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100807.112.1prot_Ecto-sp13_S_contig100807.112.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100807 113..439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100807.112.1

>prot_Ecto-sp13_S_contig100807.112.1 ID=prot_Ecto-sp13_S_contig100807.112.1|Name=mRNA_Ecto-sp13_S_contig100807.112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
TNTVLVCAYCTHVARFWQERKRNAQRKINEVDAELLALTNVNVHRSFAIS
DSVSATNHDRRYTGTADPQLESVYAAPPPGSTVTTTTHSAAPPSYHDFVG
GVTQVHIQ*
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mRNA from alignment at Ecto-sp13_S_contig100807:113..439-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100807.112.1 ID=mRNA_Ecto-sp13_S_contig100807.112.1|Name=mRNA_Ecto-sp13_S_contig100807.112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100807:113..439- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTAACACTGTTCTTGTTTGTGCGTACTGTACGCATGTTGCTCGCTTTTG
GCAGGAGAGGAAGAGGAACGCCCAGCGAAAGATCAACGAGGTGGACGCTG
AGCTCCTGGCCCTTACCAACGTCAACGTCCACAGAAGCTTCGCGATCTCC
GACTCGGTCAGCGCTACCAACCATGACCGCCGCTACACCGGGACAGCTGA
CCCCCAGCTGGAATCGGTGTACGCTGCACCCCCTCCGGGGTCGACAGTCA
CTACCACGACCCATTCGGCCGCCCCGCCGAGCTATCACGACTTCGTGGGT
GGTGTTACACAGGTCCATATCCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100807:113..439-

>mRNA_Ecto-sp13_S_contig100807.112.1 ID=mRNA_Ecto-sp13_S_contig100807.112.1|Name=mRNA_Ecto-sp13_S_contig100807.112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100807:113..439- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTAACACTGTTCTTGTTTGTGCGTACTGTACGCATGTTGCTCGCTTTTG
GCAGGAGAGGAAGAGGAACGCCCAGCGAAAGATCAACGAGGTGGACGCTG
AGCTCCTGGCCCTTACCAACGTCAACGTCCACAGAAGCTTCGCGATCTCC
GACTCGGTCAGCGCTACCAACCATGACCGCCGCTACACCGGGACAGCTGA
CCCCCAGCTGGAATCGGTGTACGCTGCACCCCCTCCGGGGTCGACAGTCA
CTACCACGACCCATTCGGCCGCCCCGCCGAGCTATCACGACTTCGTGGGT
GGTGTTACACAGGTCCATATCCAGTAG
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