|
|
Homology
BLAST of mRNA_Ecto-sp13_S_contig1123.1093.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI) HSP 1 Score: 967 bits (2501), Expect = 0.000e+0 Identity = 506/586 (86.35%), Postives = 519/586 (88.57%), Query Frame = 1
Query: 91 RFLVLDHAVLLVYASESDWADHQEPLDDVVLSAESVVETIRERGEALVKLRGPGHSPLCFACSAVNVNDSTTRPDSEAWEVAISQEIARLGRGAGTSRRLRTVAAASGAGGVRSWRLWNAVRRGAGGDSGKAEPALIADPASGDGSVDATDKDDSNRGETKHEEEEGKGQYNTGDGGGGSVAGLSSRGNTGSVLFPRGQLKRSDTPREVSDEESANRLAVAPVATKGQGKPATGGRGEEGEGNPFSGSSRASNLWRRVVGVVRQNDCVICMSESGKNGGNGSQHLSESGNKYRRECAWARSKKRTSVQAKLSPVVDRWEYLVGRWIPLQMARSGDVLGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNVMGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTMLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDEFGSQPLHWAVLHGHLDTVRWISEYTKYPATRANWAKAFEKMQKIRLVKPEHKGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGYGTEGEQCISCKRNNLFKEENRDLALVAKTWPELLPEV 1848
RFLVLDHAVLLVYAS+SDWADHQEPLDDVVLSAESVVET RER ALVKLRGPGHSPLCF CSAVNVNDSTTRPDSEAWEVAISQEIA LG AGTSRR TVAAA G GVRSWRLWNAVRR A G+SGKA ALIADPA G GSVDAT+KD SN ETKH A LSSRG F R LKRSDT +VSD+ESA+ L VAPV T+GQGKPATGGRGE GEGNP S SSRASNLWRRV GVVRQND IC SE GKNGG+GSQHLSESGNKYRREC+WARSKKR SVQAKLSPVVDRWEYLVGRWIPLQMARSGDVLGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKN MGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTMLFLLVSSRGKEAIPMLKYLVEELGLSLTEKD+FGSQPLHWAVLHGHLDTVRWISEYTKYPATRANWAKAFEKMQKIRLVKPEH GAARSWRIRGLQKSARSLTPLGVAVLHNHEHIA+WLMGYGTEG+ CISCKRNN+FKEENRDLALVAKTWPELLPEV
Sbjct: 15 RFLVLDHAVLLVYASKSDWADHQEPLDDVVLSAESVVETTREREGALVKLRGPGHSPLCFTCSAVNVNDSTTRPDSEAWEVAISQEIAGLGGDAGTSRRPHTVAAARGGRGVRSWRLWNAVRRDAEGNSGKAGAALIADPAGGGGSVDATEKDGSNHDETKHXXXXXXXXXXXXXXXXXXXARLSSRG------FRRRPLKRSDTTCKVSDQESASSLVVAPVVTEGQGKPATGGRGEGGEGNPISDSSRASNLWRRVAGVVRQNDRAICTSEPGKNGGSGSQHLSESGNKYRRECSWARSKKRASVQAKLSPVVDRWEYLVGRWIPLQMARSGDVLGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNAMGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTMLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDDFGSQPLHWAVLHGHLDTVRWISEYTKYPATRANWAKAFEKMQKIRLVKPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIARWLMGYGTEGQHCISCKRNNIFKEENRDLALVAKTWPELLPEV 594
BLAST of mRNA_Ecto-sp13_S_contig1123.1093.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE) HSP 1 Score: 892 bits (2306), Expect = 1.260e-312 Identity = 466/540 (86.30%), Postives = 481/540 (89.07%), Query Frame = 1
Query: 232 VKLRGPGHSPLCFACSAVNVNDSTTRPDSEAWEVAISQEIARLGRGAGTSRRLRTVAAASGAGGVRSWRLWNAVRRGAGGDSGKAEPALIADPASGDGSVDATDKDDSNRGETKHEEEEGKGQYNTGDGGGGSVAGLSSRGNTGSVLFPRGQLKRSDTPREVSDEESANRLAVAPVATKGQGKPATGGRGEE-GEGNPFSGSSRASNLWRRVVGVVRQNDCVICMSESGKNGGNGSQHLSESGNKYRRECAWARSKKRTSVQAKLSPVVDRWEYLVGRWIPLQMARSGDVLGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNVMGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTMLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDEFGSQPLHWAVLHGHLDTVRWISEYTKYPATRANWAKAFEKMQKIRLVKPEHKGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGYGTEGEQCISCKRNNLFKEENRDLALVAKTWPELLPEV 1848
V++RGPGHSPLCF CSAVN NDSTTRPDSEAWE+AIS+EIA LGRGAGTSRR TVAAA G GGV SWRLWN+VRRGAGGDSGKAEPALI D A+G G VDAT+KDDSN VAGLSSRGNTG V F R LKRSDTP +VSD++SAN LAVA VATKGQGKPATG RGEE GEGNP SGSSRASNLWRRV GVVRQND IC E GKNGGNGSQHLS SGNKYRREC+WARSKKRTSV AKLSPVVDRWEYLVGRWIPLQMARSGDV GVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNVMGMP+VWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQT+LFLLVSSRGKEAIPMLKYLVEELGLSLTEKDEFGSQPLHWAVL+GHLDTVRWISEYTKYPATRANWAKAFEKMQ IRLV+PEH GAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGYGTEGEQCISCKRNNLFKE NRDLALVAKTWPELLPEV
Sbjct: 6 VRVRGPGHSPLCFTCSAVNANDSTTRPDSEAWEMAISREIAGLGRGAGTSRRSHTVAAARGRGGVLSWRLWNSVRRGAGGDSGKAEPALITDSATGGGGVDATEKDDSNHXXXXXXXXXXXXXXXXXXXXXXDVAGLSSRGNTGIVRFRRRPLKRSDTPCKVSDQDSANSLAVALVATKGQGKPATGRRGEERGEGNPISGSSRASNLWRRVAGVVRQNDGAICTPEPGKNGGNGSQHLSGSGNKYRRECSWARSKKRTSVYAKLSPVVDRWEYLVGRWIPLQMARSGDVHGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNVMGMPLVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTVLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDEFGSQPLHWAVLYGHLDTVRWISEYTKYPATRANWAKAFEKMQDIRLVQPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGYGTEGEQCISCKRNNLFKE-NRDLALVAKTWPELLPEV 544
BLAST of mRNA_Ecto-sp13_S_contig1123.1093.1 vs. uniprot
Match: A0A7S1TWL2_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWL2_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.080e-36 Identity = 102/298 (34.23%), Postives = 164/298 (55.03%), Query Frame = 1
Query: 1030 VVDRWEYLVGRWIPLQMARSGD--VLGVR-SFLEKFPAFPDKD--NLLRAAVRYKQYSLVEYLLEEQHMDVNLKNVMGMPVVWFSVAFMQRGDSGVM-----LRYLLQKGADIHIKSRVGQTMLFLLVSSRGKEAIPMLKYLVE---------ELGLSLTEKDEFGSQPLHWAVLHGHLDTVRWISE--YTKYPATRANWAKAFEKMQKIRLVKPEHKGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGYGTEGEQCISCKRNNLFKEENRDLALVAKTWPELLPEVCFNT 1860
V+++W + +WI L AR GD +LG+ ++L++ DKD NLLRAA R+K V YL+EE+ +DVN N G PVVWF + + ++ V YLL++GAD + + GQ ++F + + + ++Y+ + E + ++D+FGS +H AVL+G+ V + E + R++WA A + + + L + EH A SW RGL +AR L+PLGVA+LHN E +A+ L+ + +R +F+++N DLAL+A+ WP L+P V T
Sbjct: 343 VLEKWAEVFAKWITLSAARVGDRRMLGLSLAWLDRAKPGIDKDEPNLLRAACRHKHIECVRYLVEERGVDVNGTNGSGAPVVWFCLLGLHAEEARVKAASECFHYLLERGADPTVLNAWGQNIMFWMARTNSPKIGRFMQYMEDFVIVDKQGKERRIDPCQRDKFGSSIMHTAVLYGNRYLVAHLLEKSFCADLLCRSDWAGALDMISDLGLAEDEHITARNSWPGRGLMAAARRLSPLGVAILHNQEAVAQLLVAVSPSTPGGCA-RRAAVFRDDNEDLALLARAWPSLVPAVLDAT 639
BLAST of mRNA_Ecto-sp13_S_contig1123.1093.1 vs. uniprot
Match: A0A835Z0J0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J0_9STRA) HSP 1 Score: 154 bits (389), Expect = 2.220e-35 Identity = 103/308 (33.44%), Postives = 153/308 (49.68%), Query Frame = 1
Query: 1030 VVDRWEYLVGRWIPLQMARSGDVLGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNVMGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTMLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDEFG--------------SQPLHWAVLHGHLDTVRWISEYTKYPATRANWAKAFEKMQKIRLVKPEHKGAARSWRIRGLQKSAR----------------SLTPLGVAVL----HNHEHIAKWLMGYGT-EGEQCISCKRNNLFKEENRDLALVAKTWPELLPEV 1848
+V+RW +V W LQ+ARSGDV VR FL++FP F DN+ RAA+R+K Y+LVEY L+E MDVN++N GMP WF+ F+ + D G M++YL+ +GA + + G TM+ LL ++ +AI ++ + +D G Q L +G + + +S K + +A + + R H +RG SA +LT + V L + +A+WLMGYG +C+ KR LF+++ DL +VAKTWPELLPEV
Sbjct: 1554 IVERWGKMVTSWYSLQIARSGDVDDVRRFLKRFPDFKGVDNMFRAAIRFKHYALVEYFLDEVKMDVNVRNGSGMPACWFAAIFLNKSDGGAMMQYLINRGAIVDSVNNWGMTMIHLLATADPAQAIT-----ADDAHSAYNARDSSGHSVATHSRSSLALSKQSLAQPNFNGFI--LEKLSHRRKAAMRLFHSYRALSAVDQYRFYSLPHTTGYAYGLLRGHSMSAAGREQVAQRHKRSGDACTLTFVRVLQLICSHRDRVQVAQWLMGYGPGHSVKCMRDKRALLFQDQCHDLRMVAKTWPELLPEV 1854
BLAST of mRNA_Ecto-sp13_S_contig1123.1093.1 vs. uniprot
Match: UPI001B8892F7 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8892F7) HSP 1 Score: 62.4 bits (150), Expect = 2.190e-6 Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 1
Query: 1045 EYLVGRWIPLQMA-RSGDVLGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNVMGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTMLFLLVSSRGKEAIPMLKYLVEE-LGLSLTEKDEFGSQPLHWAVLHGHLDTVR 1521
E L G PL +A G V V ++ +P + L+ A Y +V YLL+ + D N + + +V D ++ LL+ GA++++K+++G T+L +L S A+ +L+YL+E LG + +E+G PLH AV H ++ V+
Sbjct: 185 ECLKGNTKPLHIALERGCVDSVAFLIDYYPNIDMQQALIIAL--YNSSDVVSYLLK-RGADANFLDAKKNSPLHLAVEL----DKFDNIKTLLENGANVNVKNKIGNTLLHVLSGSETDGAVKLLRYLIEHGLGCDVDTSNEWGVTPLHIAVAHRRIEVVK 338
BLAST of mRNA_Ecto-sp13_S_contig1123.1093.1 vs. uniprot
Match: A0A4D5RD93_IXOSC (Putative e3 ubiquitin-protein ligase hace1-like isoform x1 (Fragment) n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A4D5RD93_IXOSC) HSP 1 Score: 56.2 bits (134), Expect = 2.450e-5 Identity = 35/123 (28.46%), Postives = 70/123 (56.91%), Query Frame = 1
Query: 1201 LLEEQHMDVNLKNVMGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTMLFLL----VSSRGKEAIPMLKYLVEELGLSLTEKDEFGSQPLHWAVLHGHLDTVRWISEYTKYPATR 1557
L+E+ H+DVN N+ G+ + F A + + ++ ++R +LQ GAD++++SR G + L+L +++ + +LK+L+E LG + E++ G PLH G+ + + ++ + P R
Sbjct: 43 LVEKNHLDVN-SNIDGLGLSIFMAACLSKKEA--VVRRMLQNGADVNVRSRSGDSPLYLATYRKLTTDDCDDTGLLKHLIE-LGCGVNEQNXXGLTPLHLCAWKGNPNLISFLLSHGADPCVR 161
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 973.4 |
| Seed ortholog evalue | 5e-281 |
| Seed eggNOG ortholog | 2880.D7FIX0 |
| Model size | 1863 |
| Hectar predicted targeting category | other localisation |
| Exons | 12 |
| EggNOG free text desc. | temperature-gated cation channel activity |
| EggNOG OGs | COG0666@1,KOG0510@2759 |
| Cds size | 1863 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462586.5173771-CDS-Ecto-sp13_S_contig1123:9271..9363 | 1681462586.5173771-CDS-Ecto-sp13_S_contig1123:9271..9363 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 9272..9363 + |
| 1681462586.529029-CDS-Ecto-sp13_S_contig1123:11007..11140 | 1681462586.529029-CDS-Ecto-sp13_S_contig1123:11007..11140 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 11008..11140 + |
| 1681462586.5390334-CDS-Ecto-sp13_S_contig1123:11912..12191 | 1681462586.5390334-CDS-Ecto-sp13_S_contig1123:11912..12191 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 11913..12191 + |
| 1681462586.5487819-CDS-Ecto-sp13_S_contig1123:12816..12988 | 1681462586.5487819-CDS-Ecto-sp13_S_contig1123:12816..12988 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 12817..12988 + |
| 1681462586.5589523-CDS-Ecto-sp13_S_contig1123:13148..13407 | 1681462586.5589523-CDS-Ecto-sp13_S_contig1123:13148..13407 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 13149..13407 + |
| 1681462586.5694318-CDS-Ecto-sp13_S_contig1123:14489..14594 | 1681462586.5694318-CDS-Ecto-sp13_S_contig1123:14489..14594 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 14490..14594 + |
| 1681462586.5823536-CDS-Ecto-sp13_S_contig1123:15125..15197 | 1681462586.5823536-CDS-Ecto-sp13_S_contig1123:15125..15197 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 15126..15197 + |
| 1681462586.5925837-CDS-Ecto-sp13_S_contig1123:15664..15767 | 1681462586.5925837-CDS-Ecto-sp13_S_contig1123:15664..15767 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 15665..15767 + |
| 1681462586.6097615-CDS-Ecto-sp13_S_contig1123:16209..16412 | 1681462586.6097615-CDS-Ecto-sp13_S_contig1123:16209..16412 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 16210..16412 + |
| 1681462586.6205006-CDS-Ecto-sp13_S_contig1123:16921..17087 | 1681462586.6205006-CDS-Ecto-sp13_S_contig1123:16921..17087 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 16922..17087 + |
| 1681462586.628566-CDS-Ecto-sp13_S_contig1123:17406..17555 | 1681462586.628566-CDS-Ecto-sp13_S_contig1123:17406..17555 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 17407..17555 + |
| 1681462586.6379395-CDS-Ecto-sp13_S_contig1123:18346..18476 | 1681462586.6379395-CDS-Ecto-sp13_S_contig1123:18346..18476 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1123 18347..18476 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1123.1093.1 >prot_Ecto-sp13_S_contig1123.1093.1 ID=prot_Ecto-sp13_S_contig1123.1093.1|Name=mRNA_Ecto-sp13_S_contig1123.1093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=621bp
MSTVGTIQGAVVLHRFPGLLGTLGWGRQNPRFLVLDHAVLLVYASESDWA DHQEPLDDVVLSAESVVETIRERGEALVKLRGPGHSPLCFACSAVNVNDS TTRPDSEAWEVAISQEIARLGRGAGTSRRLRTVAAASGAGGVRSWRLWNA VRRGAGGDSGKAEPALIADPASGDGSVDATDKDDSNRGETKHEEEEGKGQ YNTGDGGGGSVAGLSSRGNTGSVLFPRGQLKRSDTPREVSDEESANRLAV APVATKGQGKPATGGRGEEGEGNPFSGSSRASNLWRRVVGVVRQNDCVIC MSESGKNGGNGSQHLSESGNKYRRECAWARSKKRTSVQAKLSPVVDRWEY LVGRWIPLQMARSGDVLGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEY LLEEQHMDVNLKNVMGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKS RVGQTMLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDEFGSQPLHWAVLH GHLDTVRWISEYTKYPATRANWAKAFEKMQKIRLVKPEHKGAARSWRIRG LQKSARSLTPLGVAVLHNHEHIAKWLMGYGTEGEQCISCKRNNLFKEENR DLALVAKTWPELLPEVCFNT* back to topmRNA from alignment at Ecto-sp13_S_contig1123:9272..18476+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1123.1093.1 ID=mRNA_Ecto-sp13_S_contig1123.1093.1|Name=mRNA_Ecto-sp13_S_contig1123.1093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9205bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1123:9272..18476+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTCTACAGTTGGCACCATCCAGGGTGCAGTTGTCCTCCACCGTTTCCC
CGGGCTTCTGGGCACCCTAGGCTGGGGGCGTCAAAACCCTAGGTGAGATT
TAGCGGGGCTTGCGTCACAGAGCTCTTGACCCAAGTCTCGCAAAGACTGC
TGACTGCTGTCGTATGTCACATACGTTATTTTTTTTCTTTTTTGCGGCAA
GATTAGAATGTCTGCGCCTGTTCTCCTTTGCCACGGACAGCAGCGGACGA
CCTTCCAGCAGTTGTGTAAACAGAGGCGGGTTGCTTGTCGCCCTTTCTTT
ACTATGGGGTAACTCTAGCCCTCTCCGGCGGGCTCCGATTGTCGTTGACT
CTCAGTCTTTGCTCTTATCCAAAATCTGACCTTGAACAAATTTGCTCGTC
TTTGGGGCAAACATCCCGTGGTATCGCCCCGCCTGACTTCCTTCCTGCTG
CGTAAGGCGAAATTTGAGATTCAATAGACACCCATATAGTAGTCTGAATC
TGAATGATGCGTGTGTTAGTTCAATGACGTGTTTTGAGGGATTGCTGATA
GCCAAACTGGGTCCTGCGCCTTCTCATGTGTGCCGAGGCCAATACTAGAC
TGGGGGCCACTATCATGGCAGCATGCATACCAGGTATTGTAATGCTGTGG
AGACATGCCAGCAATACTGCCTCACTGCTGTCCTAACGCTTCCGATTCAA
CTGCTCGGTGGTTGACTGGATGGACTAATGAACCCATGGCGTTGTTCGTG
GATACGCAGTCACGTTGTGTTTGGGGTCGTCGATGCGAAGTTCGAAGTAG
TAAGACTAAAGCAGTAGTTGAGCGGGGGGTAAAGAGCCAGGGGTATAACT
CTCCTCCCTTGCAGTTTTAAATCTGCGCCGCTGCTGAAGACTTCCGCAAT
GCACCGGATCTTTGCGCCTCGCTGGAGGTGTCTTGTCTAACTCTAAACCG
GACGAGAGGAAGACCAGCGACTCGAAGGGAACACGCCGTGACAAACTCAC
CCTGCTACAGCAGTAGTGTACCGCCGAACGATCGTCACCTAGCAGCGCTG
CCGCCAGGATAAAAGAAGAGTGATTTCGGATACACGAATACCTAGACTAG
ATGGCAGCGCGATGTGGAGAGTGGCGGGGGCACAGCGACCAGTTCAAACC
AATGTCAGCCCTAATCGGTCTCTCGCGTGGACCATTGCTCATCATCTCAG
TGGCGTGTCTCTCATGTTTCGCTTCGTGGAGGCGGCATCGTGTTTTTGCT
TCCCTCAGTCCCCCGCCTTATTTATGTCAGGCGAAATACATCTACCTATC
GTTCTGAGTCTCATGCGGTAAGTGCGCCAAACAACACCAACGCCTGGAGC
TCGCTCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCAGGAGC
AAAGACTAACATTGCGCAACCCATAGTCGTGAATACGCATAGCACACAAT
TGACAGAGGGGACTGCTGAGCCCTTACAGATCGCGTATAACACTGAAAGA
GATCACCGCAGCAGGAAAGCGCCGTCTGTTACTCTTGTGTGATGACCCCG
GCTCATGTGTCGAACATGTACCGAGTCGAGCGATGCAGACTCGCGCCGAG
ATTAGATGGGACGAACAAAACACGAGACCACGATAACAGGAAGACCAGCC
ATCCAAGAGGGTCCGACAAGGATGTGTCGCATTCATCGTCTCTTTCCGCA
CGCTTTTGTTGGTGGTGGGATGGCGTTTTTGCCCAGGTTCCTCGTGCTAG
ACCACGCAGTGCTGCTAGTGTACGCGAGCGAGAGCGACTGGGCCGACCAC
CAAGAACCCCTGGACGATGTGGTGCTGAGCGCAGAATCGGTCGTGGAGAC
GATCCGGGAAAGGGGAGAGGTGAGTGTCGTGTGTCGAGTCGAGCGAGTTA
CTCGAGGGTGCGTTGCCGGGCGCGCCTGAGGCTGGCACTACGTTGCGCGG
AAAGTCCTATACTTCCTTTGTGCAGGTGTTGCTGTATGGCTTTGTGACGG
ACCTAAAATCGAATTGCGGAACAAACGAGCCCACAGACGGTAGCAATCCC
GCAGTGGGCAAGAAATGAGGCTTCTGAGCAGCATCTGCTGCTGCTGCTAC
TGCGAAGGACAGCCACTAATCTGGAAATGTTATTAGTAGACAAGGTTTTA
GGTTTCTACCTTCAAGCAGAGACCACTCAGGACGTAGAGGGGGGCAAAGC
TTGCGACGAGCACTTGAACAGCAATAGCACAGCTCACAATAGTGTCGTGC
GGTGCGTCACGCATCTATTTTTAGCTCATGCAGGGGGAGACAGCAGCCTG
AGCTAGCACCCGCTGCAAACGGCATAAGGTTGCAAAAGGCGCAGAAGCAG
CGGAGTTGTTGCCATCCCCGTACCCACTTCACCGCCGAGATCTGCGTAGA
GGTTGGAAGGGGCCCGAAGGACCGAGAAAAGCGGGAGAGGGGGGTTAAAG
GGGTAGCCGGTTATCGATCGTCTTGGTGCGGGGTGGCACACGTCTCTTCA
GGTGTGCACGAAATACGTCAGGCATGTGAAGTAGACGATGGCATGCCCAC
CCATGTACCAACGCCCTACGGCTGCCGCTGCTACCGCGGCAACGATGCTC
GCCGTGCACCCGCTCCTACAACCTTGCGGTCAACGCCCCAGGCGCTGGTA
AAGCTCCGCGGCCCGGGCCACTCGCCGCTCTGCTTCGCCTGTAGCGCCGT
CAACGTCAACGACTCCACCACGCGGCCTGACAGCGAGGCGTGGGAGGTAG
CAATCAGCCAGGAGATCGCTCGTCTCGGGAGGGGCGCGGGCACCTCGAGA
CGGTTGCGCACGGTGGCGGCTGCTAGCGGTGCGGGAGGGGTTCGCTCTTG
GCGTTTGTGGAATGCTGTCCGCCGGGGCGCCGGGGGGGACTCCGGGAAGG
CTGAGCCTGCGTTGATTGCGGTAAGGACTGGGGTATGTTTTTGGTGGTCA
TGGTGCTAGTGCTGTTGCTGGCCCTTTCGCTGAATTCAGTGGGTTTGAGA
GAGACACGCGAATGCCTCATCTCTAGTTTATAGGTCGCGATGCATCAGTG
AGGGTACACCAAGCTTAGATACGAAGGCCATGGATTCCAGATGGATGGCA
AGCGTGGTGAACTTCATGTATCGAGGTTAGTGACCGTGTTTTCATGAGTG
CGAAGGTTTCAGGGGAGGGGAAGAGGTGAAAGTGCCTCGTTTGTTCGCAC
AACTTCGACGCGCGAAGTAGAACACGGTGGTGTGTGAGTTGTTTCGGTTG
TACGGGAGATACGTATATCGTGTGGTATGAAAGTATTGCATTGAATATGT
ATGTGGCGAGCAATGCCCATGAGCACGTTGAGCGAGTTGTACTCCGCGCC
TCAACGGCTGTCTTCCGAACGAACGCATTTCTCTCTTTCGTTCCACGAAT
ATAATTTGTTCATGGTTGTGCGGACGATGAAAGAAGCTTGACCAACCTGC
ACTTGGACTTCCGGGTCACCTTGTCTTCGGGGTTTGGTTGCATCTTGCTG
TGTATGCTTATCCCTGCTGGAACATGAACATGGTTGATACGGCAGGACCC
GGCCAGTGGCGATGGGAGCGTCGACGCTACAGATAAAGACGACTCTAACC
GTGGCGAAACCAAGCACGAAGAGGAGGAGGGAAAAGGCCAGTACAATACA
GGGGACGGTGGGGGTGGAAGCGTTGCGGGACTGTCGAGCCGGGGCAACAC
GGGCAGCGTCCTGTTTCGTAGGTGGGTGTTGTGCTGTGGAGGTTTTATTG
CTTTGATCCATCTTTCGAGGGGTGTCGCTAGTGGAAGAGGTGGTGTTTGT
TGCTGCCGCAGACTTTGTGGGTGCTTCTAAACGCTCACTAGTGGTGATGC
CGCTGTTGCATGTCTGCCCATGCCGAGCCAGAGGACAGCTGAAGCGGAGC
GATACCCCGCGCGAGGTTTCCGACGAAGAATCGGCGAATAGGCTGGCCGT
GGCACCCGTTGCAACAAAAGGACAGGGAAAGCCGGCAACAGGAGGAAGAG
GAGAAGAAGGCGAGGGAAATCCATTCTCTGGCAGTAGCAGGGCGTCGAAT
CTGTGGAGAAGAGTTGTGGGGGTCGTCCGACAGAATGACTGTGTCATCTG
CATGTCCGAGTCGGGCAAGAATGGGGGAAACGGAAGGTAAGAATGTGGTG
GAGGGAGAGAGAGAGAGAGAGGAGAGTTGTGGTCGAATGGTGTGGAGCGT
GGAAAGGGCGTGCCGCCCACCTTACCCAAATCCAGTAGTTTAATGCTTGC
CCCCGGCTTGTACCACGATATGCTACACCAGCTTGTAGCTGGGTTTGTTT
TTGTGCGAAGATCGGTTGTGCCCAATAGGGTGGTAAACAACTACGCGCAC
ACGGGGCTCTGGTACTCTGTGAGTGGATGAGCATCGTCGAAAACCTTCCA
AAGACACGTCAGCTCCAACCTCAATGATACAATATAGTTGTTTTTGTGTA
GGGTTTGGGGTGTTCTAATTATTTTTTGATTTTGGGGAGACAATAGTGGC
AAGGTAAATTAATTCGGTCACCGTTCACCTTCACGTCGAGTTTTTCCTGC
CATGCAAAAATCGCCGGAGGGGCAGGGATCGAACTCAAGGCGGGTCGGCT
CACGAGCAGGAGTCTGTCTCCTAGACCAGCCGTCCCTTCGTTGCGTGAGG
GGTGAAAAACTCCTTTCTCAACAGCAAAAAACAACAAAAATAAATGGCCC
TGGTGCCAGGTGTACAGTCAGTGCAGCCCGGCTTGTGATGTATGAGCGAA
ATCAATCGTGTACGGAGGAACAGTTCTTCTACGAATCCTCTCACATTTGC
CACTCCGCTCTGAAATTTTTAAGGGATGGTTCAGTCGTTGACGTCATGCA
GGGAAGCTGGCTCCAATTGAATTAATCCATACAAACTCAAGTGATTTAGC
AATTTCCGACTTTTGGGACACGATATGGAGCTATGAAACCCCACCCGATG
GGGTGTGATATCTTGCGTAGCCTACGACGCACTGGTCGGGGGTGCATTTT
CGATGTCACTCCGTCCAGATTAGCTTCTCCATGCCGTGAATGAATCCAAA
GTGCCCGGCTGGCAAGATGTATTTTCCCTTGTGCACTACGACCCAGACCA
GCAGCGATGCGAGGTATGATGGGTAAATGTCCTTGGTTGGCGGTTGTTGT
GCTTCATCACAGGATTTTCTGATCATTCTTTTCCCACTTGCCCATCCGTA
CTCGACATTAAAAAACAGTCAGCACCTGTCGGAGTCGGGCAACAAGTATC
GGCGCGAATGCGCGTGGGCTAGAAGCAAGAAGCGCACTTCCGTACAAGCG
AAGCTATCGCCCGTGGTGGACAGGTACGGCAGCACGTTAGCGCAGTGTAC
TTTTAACTGTGTTGTCTCTTGCCGTTTAGCTCGTTCGAAGTTCAAAGTCT
GGTCTAGCTGCTGGTGTAGTGTGTCTTTTATCTCTTCGTTCCGAAGCAGT
TGCAACAACACTCACCGGTACATGCCTCCGCTTGTTGATCGACTATCAGC
CTACGGATACGGTTTGCAGCCGCCACTGCCTACCAACGCTTTTCTCGGAG
ATTCTCTACTTTTTAGATGCTCGGTGCTTCTGTGGCGAACAAATTATCCT
TCGAACGATAGACCCAATGCACTCCAGCATGAACCTTGATCCTTGAGCCT
TGTTCGCCTTTTGAGCCTCCTCAATCAGGAAAAGGATCATTGATGGTCGG
TCTCCAGTTACCGGCTGGGTTCACCTTTGGGCCATCCTTGTAGGCGTGGT
GACTTGGCATGCTTCGTTGGCCTGGCCACTATCTCCTACGTCTGCGTAGC
TGCTGATATATGTCGCCCATGTCGTGCGGGATCACTCATGTCGGGTGGTG
TCAGGTGGGAGTACCTGGTGGGACGTTGGATACCTCTGCAGATGGCGAGG
TCGGGAGACGTGCTTGGCGTCCGAAGGTGTGGAAACGCTGTGACGAAAGC
GGTACTCTGATATGTTGCCTGCTCCCGCTTTCTTTTTCCTTACCATGTAT
CTGATTACCCGAAAGTCGATAGCGTGTATTCCTGTTGAAGAACATGTAAG
ATTAAGAATATTTACAACATGTAACAACATGTAAGATATAAAAAAACTGT
TTGGAGTTGGTGGCCATGCCACTCTCGGGAGGTGCCGTGGGCGTGGAATT
GTGCGGCATATAGTTCGAGGGTACAAGCTACCGTTCGGTGGGACACTGTC
CTATTTCGCCCATGTTCCGACCAACCCTCCCACCACCTGGCCCGGTGAGA
ACCCGGCATGCTCCGTCCCGACTTTGTACGGATGCGAGGTCAATGGTCTA
GCGACTGCGGCATGCACGACTACTTGTATGAGTACATGAGTACAACCCCC
CCACCCACCACCACCACTGTGAAACGCGTTTTTCCGATAACAGTTTTCTG
GAGAAGTTTCCGGCGTTTCCCGATAAGGACAACCTCCTTCGAGCGGCGGT
GCGGTACAAGCAGTACTCCTTGGTGGAGTACCTACTCGAGGAGCAGGTGG
GTGCACCGCACATTAAGTCTAGCCTGATTGACACCGCACCAGCGGTTGGA
TTTTTCATATCTCTTCGTTGTGCCTTGTGGCCGTCGTAGTCTGTGTTGAG
GTTTGCATGCCTCAGTTGACGTAATTACGTTAGCCTCCAGGCATCGTCGT
TTTATGTTTGTCTGCTGTCGGCATCGTAATCTGTGTAAGGTTATGCATAC
GTCATTGACAACATGTTGGGTTCCAGGGATCATCGTGTTTCTTCGTGTGC
TGTCGTCGTCATAGTCTGTGTTGTTGATAGGCATGCTTTCGTTCCCGCTC
TTCCGGTTCTTGGTACAACAACAGGCAGCGCCGCGAGCTGCAAGTTTCGA
GCACACGGCTCCTACCTGCCTTCGCTAACTCCCGCTCTTCTGCTCGACCT
CCGTTTGTTGGCCGCCGGTCGCCATTGCCCGAAACCAGCACATGGACGTC
AACCTCAAGAATGTGATGGGCATGCCCGTGGTTTGGTTCAGCGTGGCCTT
CATGCAGAGGGGCGACAGCGGCGTCATGCTCCGGTACCTCCTGCAGAAGG
GCGCGGACATTCACATCAAGAGCCGGGTGGGGCAGACGATGCTCTTTCTC
CTCGTGTCCAGCAGGGGGAAGGAGGCCATCCCCATGCTCAAGTGAGATTT
TTTTTTGTCTGTGTGGTGGTGGTTGTGTGTCTTGACTGTGTACCAACGCC
CTAGCCCTGAGCTGTGTGTCCTAGGTTGGTCGTTTATTTCTTCACCGTTT
GTGGTTTTTGCCGGTGTTTGTGGTTGTCGGTCTTGGTTATGGGTCAATGT
CAATTCTTCCAGTAGGTTTAGGTGTCAAGCTCGCCCTACTGGTTAGCCGG
CTCGCTGGCTTTTCGAGTTCGTCGTCGCCTACGCCAAAAATTATAGGACG
CCTGTCGCCTGCTGAGCTGCCTGTGCTTGCGTGTGTCTTTTCTCCCAATC
TCAGTGGCAAGTTGTCTCCCCTGTCTTGTCGACCATCAGTTTGCTTAACA
TCTTTACCAGCTCGTTCTGCACCAGCTACTCTTCTTGTGGTACTGTTGTC
AGCAACGAACACCCAACGCGCGGCTTCATCAAGCGCGGTGTGAGACCGTC
TGTTCCACCTTGACACGTCCCCTCGACTACTGTCCACACCCCGCCACCAG
GTATCTGGTCGAGGAGCTAGGGCTGTCGCTTACGGAGAAGGACGAGTTCG
GCTCCCAGCCCCTTCACTGGGCCGTTCTCCACGGGCACCTCGACACCGTG
CGGTGGATCAGCGAGTACACCAAGTATCCCGCCACCCGAGCTAACTGGGC
CAAGGCTTTCGAAAAGGTGTGACGGGGAGCACAACAACCCTAACCCCAAC
CCTAGGCTTTCGAAGGGTGACAAGGGGGGCCCAACGAAGGGGAGGGGGGG
GGGGGTAATGACGTGAGGAATCGGATGTAGGGAGGTTGGGTCATGTTTTG
CCGTTTTTCGGCGGTGTGATGTGCGATGGAACTATAAGTACCTCGCTAGT
CTCACTGTTGGACCTCATGTCTACTCTGCGAATCCCCCCACACGCGCTCA
TGGTTCCCCGTGAATCCCAGCTACCGTCCGCGCATGCGTGCCATTGACCT
TGTTCGTTTCGATCACAACCTTCCCGGTCATACAGATGCAAAAAATCCGA
TTGGTGAAGCCGGAGCACAAGGGGGCCGCAAGGTCTTGGCGTATTCGGGG
GCTACAGAAGAGCGCGCGGTCACTGACGCCGCTCGGTGTGGCAGTGCTGC
ACAACCACGAGCACATCGCCAAGTGGCTCATGGGGTGAGACATGCGCAGA
GAGAGAGAGACACACACACACTCAAGAGAGAGAGACAGACAGAGAGAACG
GAGAGAACGGCCGTGTACTTCGAGAAATTCGTATCGAAAGTAGTTCATTG
ATCAATTCGTGTTTTCGAGAGTAAGCGGAGAGTGAGTAACGGGGACGGGG
AGAGTAAAAGTGACGTCGAGAGGCTGTGAATGAACAATCCGGGGGCATCG
GTTAGTCGCAAGCGCCCTTATCTCGCGCCCAGGCGGCCTGTTGGCTGAGC
TGTATAGCCTGTTCTTTACGCCTCAGCTCGAACGCGAGGCCATCCCCAAG
ACTGAATTGGGGTCATGCTTTCCTGTCTCCCAATCCTTGACGCGCCAAGG
AAAAGGCCTGGGGTGTCAAGGGCATGGACAACAATCCCCCTCTTCGTAAA
CGCCTATATTAACGGTTTCTATGTCCGCGAAGGTCTCAGCTCGAACGCGA
GGCCATCCCCAAGACTGAATTGGGGTCATGCTTTCCTGTCTCCCAATCCT
TGACGCGCCAAGGAAAAGGCCTGGGGCGTCAAGGGTATGGACAACAATCC
CCCTCTTCGTAAACGCCTATATTAACGGTTTCTATGTCCGCGAAGGTGCC
AGGCGGCCGAAACGGTCGTTCGCGTGCGAGAATTTGAATACCATACAGCA
ATGTCACCACCTACACCGCCTCTATACTGGTATGTTGCAACACTAGCAAC
AGCAGCGGGAGCGGCAGCAGTAGTAGCAGCAGCAGCAGCAACAGCAACAA
CAACAACAACACGATATATTATCAGGTATGGCACCGAGGGGGAGCAGTGC
ATCTCATGCAAGAGGAACAACCTCTTCAAGGAGGAGAACAGGGACCTCGC
GCTCGTGGCCAAGACGTGGCCAGAGCTTCTGCCAGAGGTATGCTTCAATA
CATGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1123:9272..18476+ >mRNA_Ecto-sp13_S_contig1123.1093.1 ID=mRNA_Ecto-sp13_S_contig1123.1093.1|Name=mRNA_Ecto-sp13_S_contig1123.1093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1863bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1123:9272..18476+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTCTACAGTTGGCACCATCCAGGGTGCAGTTGTCCTCCACCGTTTCCC CGGGCTTCTGGGCACCCTAGGCTGGGGGCGTCAAAACCCTAGGTTCCTCG TGCTAGACCACGCAGTGCTGCTAGTGTACGCGAGCGAGAGCGACTGGGCC GACCACCAAGAACCCCTGGACGATGTGGTGCTGAGCGCAGAATCGGTCGT GGAGACGATCCGGGAAAGGGGAGAGGCGCTGGTAAAGCTCCGCGGCCCGG GCCACTCGCCGCTCTGCTTCGCCTGTAGCGCCGTCAACGTCAACGACTCC ACCACGCGGCCTGACAGCGAGGCGTGGGAGGTAGCAATCAGCCAGGAGAT CGCTCGTCTCGGGAGGGGCGCGGGCACCTCGAGACGGTTGCGCACGGTGG CGGCTGCTAGCGGTGCGGGAGGGGTTCGCTCTTGGCGTTTGTGGAATGCT GTCCGCCGGGGCGCCGGGGGGGACTCCGGGAAGGCTGAGCCTGCGTTGAT TGCGGACCCGGCCAGTGGCGATGGGAGCGTCGACGCTACAGATAAAGACG ACTCTAACCGTGGCGAAACCAAGCACGAAGAGGAGGAGGGAAAAGGCCAG TACAATACAGGGGACGGTGGGGGTGGAAGCGTTGCGGGACTGTCGAGCCG GGGCAACACGGGCAGCGTCCTGTTTCCCAGAGGACAGCTGAAGCGGAGCG ATACCCCGCGCGAGGTTTCCGACGAAGAATCGGCGAATAGGCTGGCCGTG GCACCCGTTGCAACAAAAGGACAGGGAAAGCCGGCAACAGGAGGAAGAGG AGAAGAAGGCGAGGGAAATCCATTCTCTGGCAGTAGCAGGGCGTCGAATC TGTGGAGAAGAGTTGTGGGGGTCGTCCGACAGAATGACTGTGTCATCTGC ATGTCCGAGTCGGGCAAGAATGGGGGAAACGGAAGTCAGCACCTGTCGGA GTCGGGCAACAAGTATCGGCGCGAATGCGCGTGGGCTAGAAGCAAGAAGC GCACTTCCGTACAAGCGAAGCTATCGCCCGTGGTGGACAGGTGGGAGTAC CTGGTGGGACGTTGGATACCTCTGCAGATGGCGAGGTCGGGAGACGTGCT TGGCGTCCGAAGTTTTCTGGAGAAGTTTCCGGCGTTTCCCGATAAGGACA ACCTCCTTCGAGCGGCGGTGCGGTACAAGCAGTACTCCTTGGTGGAGTAC CTACTCGAGGAGCAGCACATGGACGTCAACCTCAAGAATGTGATGGGCAT GCCCGTGGTTTGGTTCAGCGTGGCCTTCATGCAGAGGGGCGACAGCGGCG TCATGCTCCGGTACCTCCTGCAGAAGGGCGCGGACATTCACATCAAGAGC CGGGTGGGGCAGACGATGCTCTTTCTCCTCGTGTCCAGCAGGGGGAAGGA GGCCATCCCCATGCTCAAGTATCTGGTCGAGGAGCTAGGGCTGTCGCTTA CGGAGAAGGACGAGTTCGGCTCCCAGCCCCTTCACTGGGCCGTTCTCCAC GGGCACCTCGACACCGTGCGGTGGATCAGCGAGTACACCAAGTATCCCGC CACCCGAGCTAACTGGGCCAAGGCTTTCGAAAAGATGCAAAAAATCCGAT TGGTGAAGCCGGAGCACAAGGGGGCCGCAAGGTCTTGGCGTATTCGGGGG CTACAGAAGAGCGCGCGGTCACTGACGCCGCTCGGTGTGGCAGTGCTGCA CAACCACGAGCACATCGCCAAGTGGCTCATGGGGTATGGCACCGAGGGGG AGCAGTGCATCTCATGCAAGAGGAACAACCTCTTCAAGGAGGAGAACAGG GACCTCGCGCTCGTGGCCAAGACGTGGCCAGAGCTTCTGCCAGAGGTATG CTTCAATACATGA back to top
|