mRNA_Ecto-sp13_S_contig11213.1074.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11213.1074.1
Unique NamemRNA_Ecto-sp13_S_contig11213.1074.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11213.1074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11213contigEcto-sp13_S_contig11213:4355..4797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size443
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462584.7952735-UTR-Ecto-sp13_S_contig11213:4354..44091681462584.7952735-UTR-Ecto-sp13_S_contig11213:4354..4409Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11213 4355..4409 +
1681462584.812576-UTR-Ecto-sp13_S_contig11213:4724..47971681462584.812576-UTR-Ecto-sp13_S_contig11213:4724..4797Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11213 4725..4797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462584.8042307-CDS-Ecto-sp13_S_contig11213:4409..47241681462584.8042307-CDS-Ecto-sp13_S_contig11213:4409..4724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11213 4410..4724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11213.1074.1prot_Ecto-sp13_S_contig11213.1074.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11213 4410..4724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11213.1074.1

>prot_Ecto-sp13_S_contig11213.1074.1 ID=prot_Ecto-sp13_S_contig11213.1074.1|Name=mRNA_Ecto-sp13_S_contig11213.1074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MVSGVREEHSVERAVLAGHSPSKQCPYLEGVDLVPRGNTSRRSRENMTHL
CMRSRVDVLFGNAIDQSYEQPEPLELCGQHQQKKLYCRAGCGGTTRTTLV
SVDT*
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mRNA from alignment at Ecto-sp13_S_contig11213:4355..4797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11213.1074.1 ID=mRNA_Ecto-sp13_S_contig11213.1074.1|Name=mRNA_Ecto-sp13_S_contig11213.1074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=443bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11213:4355..4797+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGCAGGTGGTGAGGAGGAGGGGGGGGGCGACTTAAACGGCTGTGGCA
CCGGGATGGTTTCAGGAGTCAGGGAGGAACACAGCGTCGAGAGAGCCGTC
CTTGCCGGGCACTCCCCATCCAAGCAGTGTCCCTACTTGGAGGGCGTTGA
CCTCGTGCCTCGAGGCAACACCTCGCGAAGGTCACGTGAAAACATGACCC
ATTTATGCATGCGTTCCAGAGTCGACGTTTTGTTTGGGAATGCGATCGAT
CAGTCCTACGAACAACCAGAACCTTTAGAATTATGCGGCCAACACCAACA
AAAAAAACTTTACTGCCGTGCGGGTTGCGGCGGCACAACTAGAACTACAC
TTGTGTCGGTAGATACATAGCGGCAAAGGGCTTAGCTCCTTACCGGCAGC
GGAGGGCGCAGAGCCGACTGAAGCTGCCGAGTACTGCTGGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11213:4355..4797+

>mRNA_Ecto-sp13_S_contig11213.1074.1 ID=mRNA_Ecto-sp13_S_contig11213.1074.1|Name=mRNA_Ecto-sp13_S_contig11213.1074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11213:4355..4797+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTCAGGAGTCAGGGAGGAACACAGCGTCGAGAGAGCCGTCCTTGC
CGGGCACTCCCCATCCAAGCAGTGTCCCTACTTGGAGGGCGTTGACCTCG
TGCCTCGAGGCAACACCTCGCGAAGGTCACGTGAAAACATGACCCATTTA
TGCATGCGTTCCAGAGTCGACGTTTTGTTTGGGAATGCGATCGATCAGTC
CTACGAACAACCAGAACCTTTAGAATTATGCGGCCAACACCAACAAAAAA
AACTTTACTGCCGTGCGGGTTGCGGCGGCACAACTAGAACTACACTTGTG
TCGGTAGATACATAG
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