mRNA_Ecto-sp13_S_contig10077.106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10077.106.1
Unique NamemRNA_Ecto-sp13_S_contig10077.106.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5L3M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M5_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 3.180e-103
Identity = 155/167 (92.81%), Postives = 162/167 (97.01%), Query Frame = 1 
Query:    1 EQSLCLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYALPDAWNRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILGAV 501
            +Q+LCLDAF+AVLNHQSC EG++RWYTSIRELQLVSLKFCGVCRSTSILRVRV+H APPSLWSPTKSFSYALPDAWNRVPAVRAYGWTWSIPVDTLLKV DLRYWA+ ELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILG V
Sbjct:   99 KQNLCLDAFVAVLNHQSCVEGKKRWYTSIRELQLVSLKFCGVCRSTSILRVRVEHNAPPSLWSPTKSFSYALPDAWNRVPAVRAYGWTWSIPVDTLLKVCDLRYWAKAELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILGVV 265
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BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.310e-32
Identity = 77/169 (45.56%), Postives = 102/169 (60.36%), Query Frame = 1 
Query:    7 SLCLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYA---LPDAW--NRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEA-KLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILG 495
            S CLDAF+  LN Q+CD  ++RWY S  ELQLVSL+ CG CR    L VRV  + PPSLW P+++ +      P     +RVP V+A+G TW++P+  L +       + +   R  +   A  L S VWPQ LK++ F+ D  V  ASWPASLQ L+FGC FNQ I+G
Sbjct:    7 SKCLDAFVVALN-QACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIVG 174
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BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 8.590e-26
Identity = 73/174 (41.95%), Postives = 99/174 (56.90%), Query Frame = 1 
Query:    4 QSLCLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSY--------ALPDAWNRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEAKLAS--VVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPILG 495
            +S CLDAF+  L  Q+ D   +RWY S  ELQLVSL+FCG CRS     V++  + P SLWSP KS            +P   +RVPAV+A GW W++P++ LL  R      Q   +R+ + P +  +   + W Q L +L F  + +V   SWPA LQ L+FG  FNQPI+G
Sbjct:   26 RSECLDAFIVALK-QAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIP---SRVPAVQANGWMWALPMEILLP-RSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPIIG 194
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BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 9.370e-24
Identity = 67/158 (42.41%), Postives = 88/158 (55.70%), Query Frame = 1 
Query:   13 CLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYALPDAWNRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEA-KLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQ 483
            C+DAF+  LN ++CD G++RWY S  ELQ VSL+FC  CR     RV   H           S    L    +R P VRAY  TW++ +D LL+   +     ++  R G    A  LAS++W Q LK+L  +LDT V  ASWPASLQ L+FG  FN+
Sbjct:   19 CVDAFIVALN-RTCDGGEQRWYASTLELQPVSLEFCVACR-----RVPTSHST---------STVGRLVSGVSRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
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BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5JSE5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.080e-11
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    4 QSLCLDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYALPDAWNRVPAVRAY 255
            +S CLDAF+  +N Q+ D  +++WY S  ELQLVSL FCG CRS  +L + VD   PPSLW P KS  Y  P+   R+ A R +
Sbjct:  972 KSKCLDAFIVTMN-QAADGRKQQWYASTLELQLVSLAFCGACRSAKMLHLHVDRGKPPSLWFPHKS--YTTPN--KRIAASRVW 1050
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BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5JTV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV8_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 8.100e-9
Identity = 53/138 (38.41%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:   16 LDAFMAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPPSLWSPTKSFSYALPD--------AWNRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTELSRRGSFPEAKLASVVWPQGLKQLEF 405
            LDAF  VLN      G   W  S  EL+LVS + C  CRS S L +RV    P  LW+   +   A P         +   VP  R    TW +P  TL   R    +A  E    GSF + + +SVVWP+GLK+LEF
Sbjct:   31 LDAFTVVLNQNH--SGGAGWLASTSELRLVSFQSCVECRSLSRLALRVSSDTPERLWAAGYAIENAPPSDRAHETVSSAANVPPFRVVKATWLLP--TLALKRTGPAFAGLEELSLGSF-KFRSSSVVWPRGLKKLEF 163
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BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Match: A0A6H5J7K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.070e-6
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:  229 NRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQT-ELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPI 489
            +RVP V+A+G    +P + LL+   +   + +     +G    A L S+ W + L  L  +LDT   K SW ASLQ L+FG  FNQP+
Sbjct:    2 SRVPGVQAFGLLLGLPTEVLLQSSAIELGSGSGHQHMKGHASAASLGSMSWLKKLNWLVLELDTPANKTSWAASLQQLSFGDCFNQPL 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10077.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L3M5_9PHAE3.180e-10392.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNI6_9PHAE2.310e-3245.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K9_9PHAE8.590e-2641.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2L2_9PHAE9.370e-2442.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSE5_9PHAE1.080e-1148.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTV8_9PHAE8.100e-938.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7K7_9PHAE3.070e-637.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10077contigEcto-sp13_S_contig10077:2980..4257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1278
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_000140.1
Cds size1251
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.9047542-CDS-Ecto-sp13_S_contig10077:2979..42301681462505.9047542-CDS-Ecto-sp13_S_contig10077:2979..4230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10077 2980..4230 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.9197311-UTR-Ecto-sp13_S_contig10077:4230..42571681462505.9197311-UTR-Ecto-sp13_S_contig10077:4230..4257Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10077 4231..4257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10077.106.1prot_Ecto-sp13_S_contig10077.106.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10077 2980..4230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10077.106.1

>prot_Ecto-sp13_S_contig10077.106.1 ID=prot_Ecto-sp13_S_contig10077.106.1|Name=mRNA_Ecto-sp13_S_contig10077.106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=417bp
MAVLNHQSCDEGQERWYTSIRELQLVSLKFCGVCRSTSILRVRVDHKAPP
SLWSPTKSFSYALPDAWNRVPAVRAYGWTWSIPVDTLLKVRDLRYWAQTE
LSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSF
NQPILGAVWPSSLQQLSLGHDFNQSIDGVRWPSCLRELSFGYKFNQPIAG
VLWPGSLEALSFGNCFDQPIAGTVWPSSLQQLSFGHCFDQGIVGVVWPAS
LQQLSFGYQFNKTLAGVLWPAYLQRLLFGHFFNQPIAGVWWPASLQQLSF
GGSFNQPIAGVSWPASLQQLSFGGFFNQPITDVVWPASLQQLSFGTLFNQ
PITGASWPTSLQQLSFGDNFNQPIAGVLWPCSLQDLSFGFGFMQSARGVV
WPASLRSVALGGTKLL*
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mRNA from alignment at Ecto-sp13_S_contig10077:2980..4257-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10077.106.1 ID=mRNA_Ecto-sp13_S_contig10077.106.1|Name=mRNA_Ecto-sp13_S_contig10077.106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10077:2980..4257- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACAAAGCCTGTGCCTGGACGCGTTTATGGCGGTATTGAATCATCAATC
TTGCGACGAAGGACAGGAGCGCTGGTACACGTCTATTCGGGAGCTACAGC
TGGTGTCGCTGAAATTTTGCGGGGTGTGCAGAAGCACCTCGATCTTGCGT
GTGCGTGTGGATCACAAAGCGCCTCCTAGCTTGTGGTCTCCTACCAAATC
TTTCTCGTACGCCCTACCGGACGCTTGGAATCGCGTACCGGCTGTGCGGG
CCTATGGTTGGACGTGGTCGATTCCCGTTGATACTCTATTGAAGGTTCGT
GACCTTCGATATTGGGCACAAACAGAACTGAGCCGTCGGGGATCTTTCCC
TGAAGCAAAGCTGGCATCAGTGGTTTGGCCCCAAGGTCTCAAGCAGCTGG
AATTCGACTTGGACACGGCAGTGGAAAAGGCATCGTGGCCGGCGTCATTG
CAAAGCCTGACGTTTGGATGTAGCTTCAATCAGCCCATTCTCGGAGCCGT
GTGGCCGTCCTCCCTGCAACAGCTTTCGCTAGGCCATGACTTCAACCAGT
CAATCGATGGAGTCCGGTGGCCGTCTTGCCTGCGAGAGCTATCGTTTGGA
TACAAGTTCAACCAGCCCATCGCTGGCGTCTTGTGGCCGGGTTCGCTGGA
GGCCCTGTCGTTTGGCAATTGCTTCGACCAGCCTATCGCTGGAACCGTGT
GGCCGTCCTCGCTGCAGCAACTATCGTTTGGGCATTGCTTCGACCAGGGC
ATCGTCGGAGTTGTGTGGCCGGCCTCCCTTCAGCAGCTATCGTTTGGGTA
TCAGTTCAACAAAACTCTCGCCGGGGTTTTGTGGCCGGCGTACTTGCAGA
GGCTGTTGTTCGGGCATTTCTTCAACCAGCCCATCGCCGGAGTTTGGTGG
CCAGCCTCCCTGCAACAGCTTTCGTTTGGAGGTTCATTCAACCAGCCCAT
CGCCGGGGTCTCGTGGCCGGCTTCACTGCAGCAACTGTCGTTTGGAGGCT
TCTTCAACCAACCCATCACCGACGTTGTCTGGCCGGCCTCCCTGCAACAG
CTATCGTTTGGGACGTTGTTTAACCAGCCCATTACCGGGGCCTCGTGGCC
GACGTCACTGCAACAGCTCTCCTTTGGGGATAACTTCAATCAGCCCATAG
CCGGCGTCTTGTGGCCGTGTTCGCTTCAGGACCTATCGTTCGGGTTTGGT
TTCATGCAATCTGCTAGAGGGGTTGTGTGGCCGGCCTCCTTACGAAGCGT
GGCTCTTGGGGGAACCAAGCTCCTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10077:2980..4257-

>mRNA_Ecto-sp13_S_contig10077.106.1 ID=mRNA_Ecto-sp13_S_contig10077.106.1|Name=mRNA_Ecto-sp13_S_contig10077.106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1251bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10077:2980..4257- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGTATTGAATCATCAATCTTGCGACGAAGGACAGGAGCGCTGGTA
CACGTCTATTCGGGAGCTACAGCTGGTGTCGCTGAAATTTTGCGGGGTGT
GCAGAAGCACCTCGATCTTGCGTGTGCGTGTGGATCACAAAGCGCCTCCT
AGCTTGTGGTCTCCTACCAAATCTTTCTCGTACGCCCTACCGGACGCTTG
GAATCGCGTACCGGCTGTGCGGGCCTATGGTTGGACGTGGTCGATTCCCG
TTGATACTCTATTGAAGGTTCGTGACCTTCGATATTGGGCACAAACAGAA
CTGAGCCGTCGGGGATCTTTCCCTGAAGCAAAGCTGGCATCAGTGGTTTG
GCCCCAAGGTCTCAAGCAGCTGGAATTCGACTTGGACACGGCAGTGGAAA
AGGCATCGTGGCCGGCGTCATTGCAAAGCCTGACGTTTGGATGTAGCTTC
AATCAGCCCATTCTCGGAGCCGTGTGGCCGTCCTCCCTGCAACAGCTTTC
GCTAGGCCATGACTTCAACCAGTCAATCGATGGAGTCCGGTGGCCGTCTT
GCCTGCGAGAGCTATCGTTTGGATACAAGTTCAACCAGCCCATCGCTGGC
GTCTTGTGGCCGGGTTCGCTGGAGGCCCTGTCGTTTGGCAATTGCTTCGA
CCAGCCTATCGCTGGAACCGTGTGGCCGTCCTCGCTGCAGCAACTATCGT
TTGGGCATTGCTTCGACCAGGGCATCGTCGGAGTTGTGTGGCCGGCCTCC
CTTCAGCAGCTATCGTTTGGGTATCAGTTCAACAAAACTCTCGCCGGGGT
TTTGTGGCCGGCGTACTTGCAGAGGCTGTTGTTCGGGCATTTCTTCAACC
AGCCCATCGCCGGAGTTTGGTGGCCAGCCTCCCTGCAACAGCTTTCGTTT
GGAGGTTCATTCAACCAGCCCATCGCCGGGGTCTCGTGGCCGGCTTCACT
GCAGCAACTGTCGTTTGGAGGCTTCTTCAACCAACCCATCACCGACGTTG
TCTGGCCGGCCTCCCTGCAACAGCTATCGTTTGGGACGTTGTTTAACCAG
CCCATTACCGGGGCCTCGTGGCCGACGTCACTGCAACAGCTCTCCTTTGG
GGATAACTTCAATCAGCCCATAGCCGGCGTCTTGTGGCCGTGTTCGCTTC
AGGACCTATCGTTCGGGTTTGGTTTCATGCAATCTGCTAGAGGGGTTGTG
TGGCCGGCCTCCTTACGAAGCGTGGCTCTTGGGGGAACCAAGCTCCTATG
A
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