mRNA_Ecto-sp13_S_contig10073.100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10073.100.1
Unique NamemRNA_Ecto-sp13_S_contig10073.100.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10073.100.1 vs. uniprot
Match: A0A6H5K3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H3_9PHAE)

HSP 1 Score: 400 bits (1027), Expect = 6.450e-134
Identity = 249/359 (69.36%), Postives = 257/359 (71.59%), Query Frame = 1 
Query:    1 MCRKRSMEISRWLIFVVISASSIASGEQPPASPPSQHGIRIDSRARPPXXXXXXXXXXXXXXXXXXISPSPWSFPPRQQRHSTVLSTREGGCAGSASAPAGAFLEHYSPAAAXXXXXXXXXXAATRVPVLQQLPSKAANATRTLLPLAPFVVEVPALAAHARAAWPWARSAMTAAVAVAFSRRPFAFVLPPTQPRPYRRWKQXXXXXXXXXPRAIARIHQEREEQQACCGPSRLGRRGFFSISSSGSGSGSDGGSSTNDRSALHPSNRSPSCCRDVDVATSSFTRRGAIEKTLVSAARWWAVVAAGSSVAFADADVGATRVGDQLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEAS 1077
            MC KRS E+SRWLIF VISASSIASGEQP ASPPS HGIRIDSRARPP                  ISPSPWS PPRQQR+STVLSTRE G  GSASAPA AFLEH+SP+AA XXXXXXXXXAA RVPVLQ LPSKAAN TR LLPLAPFVVEVPALAAHARAA PWARSAMTAAVA AFSRRPFA                                                  RGF  +S  G       GSSTNDRSAL P++RSPSCCRDVDVAT S TRRGAIE+TLVSAARWWAV AAGSS AFADADVGAT VGDQLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEAS
Sbjct:    1 MCWKRSTEVSRWLIFAVISASSIASGEQPLASPPSHHGIRIDSRARPPPSPDDTAATLTTSSSPAPISPSPWSSPPRQQRYSTVLSTREDGRVGSASAPA-AFLEHFSPSAAAXXXXXXXXXAAARVPVLQHLPSKAANVTRNLLPLAPFVVEVPALAAHARAARPWARSAMTAAVAAAFSRRPFA--------------------------------------------------RGFICLSGGGXXXXXXXGSSTNDRSALDPNSRSPSCCRDVDVATPSLTRRGAIEETLVSAARWWAVAAAGSSGAFADADVGATGVGDQLSSKALTKESYDGFAEGYDDLDGGWAASAIGLEAS 308
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BLAST of mRNA_Ecto-sp13_S_contig10073.100.1 vs. uniprot
Match: D8LQ21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ21_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 7.880e-24
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:  889 ARWWAVVAAGSSVAFADADVGATRVGDQLSSKALTKESYDGFAEGYDDLDGGWAASAIGLE 1071
            ARWWAV AA SS AFAD DVGAT VGDQLSSKALTKESYDGFAEGYD+LDGGWAASAIGLE
Sbjct:    2 ARWWAVAAAASSGAFADTDVGATGVGDQLSSKALTKESYDGFAEGYDNLDGGWAASAIGLE 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10073.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3H3_9PHAE6.450e-13469.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ21_ECTSI7.880e-2490.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10073contigEcto-sp13_S_contig10073:1226..2720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score109.0
Seed ortholog evalue4.7e-21
Seed eggNOG ortholog2880.D8LQ21
Model size1080
KEGG koko:K17803
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.methyltransferase activity
EggNOG OGsCOG0500@1,KOG4300@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-15_001250.1
Cds size1080
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.5108085-CDS-Ecto-sp13_S_contig10073:1225..22311681462505.5108085-CDS-Ecto-sp13_S_contig10073:1225..2231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10073 1226..2231 -
1681462505.5203114-CDS-Ecto-sp13_S_contig10073:2646..27201681462505.5203114-CDS-Ecto-sp13_S_contig10073:2646..2720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10073 2647..2720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10073.100.1prot_Ecto-sp13_S_contig10073.100.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10073 1226..2720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10073.100.1

>prot_Ecto-sp13_S_contig10073.100.1 ID=prot_Ecto-sp13_S_contig10073.100.1|Name=mRNA_Ecto-sp13_S_contig10073.100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
MCRKRSMEISRWLIFVVISASSIASGEQPPASPPSQHGIRIDSRARPPPS
PDATAATLTTSSSPAPISPSPWSFPPRQQRHSTVLSTREGGCAGSASAPA
GAFLEHYSPAAAAAAAAASVATAATRVPVLQQLPSKAANATRTLLPLAPF
VVEVPALAAHARAAWPWARSAMTAAVAVAFSRRPFAFVLPPTQPRPYRRW
KQQQQQQQQQKPRAIARIHQEREEQQACCGPSRLGRRGFFSISSSGSGSG
SDGGSSTNDRSALHPSNRSPSCCRDVDVATSSFTRRGAIEKTLVSAARWW
AVVAAGSSVAFADADVGATRVGDQLSSKALTKESYDGFAEGYDDLDGGWA
ASAIGLEAS*
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mRNA from alignment at Ecto-sp13_S_contig10073:1226..2720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10073.100.1 ID=mRNA_Ecto-sp13_S_contig10073.100.1|Name=mRNA_Ecto-sp13_S_contig10073.100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10073:1226..2720- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCGGAAAAGATCGATGGAGATTTCTAGGTGGCTGATTTTTGTTGT
CATCAGCGCTTCCAGCATCGCCAGGTGAGCTGCGGTTTGGGCAGCAGCTG
CACACACGAAACTAGCTGCTGTGCATTTTTCCTTCTGTGGGCTCTGGAGT
GATTCCCCCCTAGCGGCCCGATTTGAGGCTACGTAGGTTGGAATGCCCGT
GTTGCTTGACTCTCTCGCATGGAACTTCCGCTAAGCACGCTCTGGATGCA
GTGCTTCGTTAGTTTGCAGCACCACAAAACCGATATTCTGTCTAGACGTT
GCCCGAAATGCAACGGGGTTGTGGAGGGCGGAACCCGGTACAGCGTACAT
GTACCGACGCAAACAGGCAGGCGAGCTTGCGTGCATCTCTACCAATCGCT
AGAGGACATCCCGTTCGTTTATTGTGCCCTCAGTCCGCCGACCTACTCTT
TCCTCGTGTTACCATCCATGCATGCGTTATCACTCTCAGCGGGGAGCAAC
CCCCCGCTTCTCCGCCTTCCCAGCACGGGATTCGCATCGACAGCCGAGCA
AGGCCACCACCATCACCCGATGCCACTGCGGCAACATTAACAACCAGTTC
CTCGCCAGCACCGATATCGCCATCGCCATGGTCTTTTCCACCACGACAGC
AACGGCACTCGACGGTGCTATCAACACGAGAAGGCGGCTGTGCTGGCTCC
GCCAGCGCGCCAGCTGGTGCTTTTCTCGAGCATTACTCTCCCGCCGCAGC
CGCAGCAGCTGCTGCAGCGAGCGTAGCAACGGCTGCCACGCGGGTACCAG
TGCTGCAACAGCTGCCATCGAAGGCCGCGAACGCAACCCGGACCCTGTTG
CCGCTGGCGCCCTTCGTTGTGGAAGTCCCGGCGCTTGCGGCGCACGCCCG
TGCCGCGTGGCCATGGGCGCGCTCCGCGATGACCGCCGCCGTCGCCGTTG
CCTTCTCCCGCCGTCCGTTCGCGTTCGTTCTTCCCCCCACCCAACCCCGA
CCCTACCGGCGATGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCC
TAGAGCCATAGCGAGAATACATCAGGAGCGAGAAGAACAACAAGCCTGCT
GTGGACCTTCTCGGCTGGGCAGGCGCGGTTTTTTTAGCATAAGCAGTAGT
GGTAGTGGTTCCGGATCCGACGGCGGTAGTAGCACGAACGACCGGAGCGC
TCTTCATCCGAGTAATCGGTCTCCCTCTTGCTGCCGCGACGTCGACGTCG
CGACGTCATCCTTCACACGACGCGGGGCAATAGAGAAAACGCTTGTCTCC
GCAGCACGGTGGTGGGCAGTGGTAGCGGCGGGATCGTCGGTGGCGTTCGC
GGATGCTGACGTGGGGGCAACAAGGGTTGGGGACCAGCTGAGTTCGAAGG
CACTCACGAAGGAATCCTACGACGGTTTCGCCGAGGGGTACGATGACCTG
GACGGCGGTTGGGCGGCATCGGCCATCGGACTGGAGGCGAGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10073:1226..2720-

>mRNA_Ecto-sp13_S_contig10073.100.1 ID=mRNA_Ecto-sp13_S_contig10073.100.1|Name=mRNA_Ecto-sp13_S_contig10073.100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10073:1226..2720- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCGGAAAAGATCGATGGAGATTTCTAGGTGGCTGATTTTTGTTGT
CATCAGCGCTTCCAGCATCGCCAGCGGGGAGCAACCCCCCGCTTCTCCGC
CTTCCCAGCACGGGATTCGCATCGACAGCCGAGCAAGGCCACCACCATCA
CCCGATGCCACTGCGGCAACATTAACAACCAGTTCCTCGCCAGCACCGAT
ATCGCCATCGCCATGGTCTTTTCCACCACGACAGCAACGGCACTCGACGG
TGCTATCAACACGAGAAGGCGGCTGTGCTGGCTCCGCCAGCGCGCCAGCT
GGTGCTTTTCTCGAGCATTACTCTCCCGCCGCAGCCGCAGCAGCTGCTGC
AGCGAGCGTAGCAACGGCTGCCACGCGGGTACCAGTGCTGCAACAGCTGC
CATCGAAGGCCGCGAACGCAACCCGGACCCTGTTGCCGCTGGCGCCCTTC
GTTGTGGAAGTCCCGGCGCTTGCGGCGCACGCCCGTGCCGCGTGGCCATG
GGCGCGCTCCGCGATGACCGCCGCCGTCGCCGTTGCCTTCTCCCGCCGTC
CGTTCGCGTTCGTTCTTCCCCCCACCCAACCCCGACCCTACCGGCGATGG
AAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCCTAGAGCCATAGCGAG
AATACATCAGGAGCGAGAAGAACAACAAGCCTGCTGTGGACCTTCTCGGC
TGGGCAGGCGCGGTTTTTTTAGCATAAGCAGTAGTGGTAGTGGTTCCGGA
TCCGACGGCGGTAGTAGCACGAACGACCGGAGCGCTCTTCATCCGAGTAA
TCGGTCTCCCTCTTGCTGCCGCGACGTCGACGTCGCGACGTCATCCTTCA
CACGACGCGGGGCAATAGAGAAAACGCTTGTCTCCGCAGCACGGTGGTGG
GCAGTGGTAGCGGCGGGATCGTCGGTGGCGTTCGCGGATGCTGACGTGGG
GGCAACAAGGGTTGGGGACCAGCTGAGTTCGAAGGCACTCACGAAGGAAT
CCTACGACGGTTTCGCCGAGGGGTACGATGACCTGGACGGCGGTTGGGCG
GCATCGGCCATCGGACTGGAGGCGAGTTAG
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