mRNA_Ecto-sp13_S_contig11128.988.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11128.988.1
Unique NamemRNA_Ecto-sp13_S_contig11128.988.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11128.988.1 vs. uniprot
Match: D7G7F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F4_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 1.240e-73
Identity = 159/175 (90.86%), Postives = 161/175 (92.00%), Query Frame = 1 
Query:    1 DCRAAMALARVRDEGGQTEEALKRAASIAEGNRARTKLVQQARRLSQALKAADKGTPVRSGRVSRKTFAKALAKEGGLGRVGEAELTR*SVLSMLLVRHGCSEQGGTYVNYPVFVASFTAAVMSADPSCAVAAVXXXXXXXXXXXXXXXAKKSSETFSGMVTGATPTKHKKENHE 525
            DCRAAMALARVRD GGQTEE LKRAA IAEGNRARTKLVQQ RRLS+ALKAADKGTPVRSGRVSRKTFAKALAKEGGLGRVGEAELTR      LLVRHGCSEQGGTYVNYPVFVASFTAAVMSADPS AVA  XXXXXXXXXXXXXXXAKKSSETFSGMV GATPTKH+KENHE
Sbjct:  864 DCRAAMALARVRDGGGQTEEDLKRAALIAEGNRARTKLVQQVRRLSKALKAADKGTPVRSGRVSRKTFAKALAKEGGLGRVGEAELTR------LLVRHGCSEQGGTYVNYPVFVASFTAAVMSADPSSAVAXXXXXXXXXXXXXXXXXAKKSSETFSGMVAGATPTKHEKENHE 1032
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BLAST of mRNA_Ecto-sp13_S_contig11128.988.1 vs. uniprot
Match: A0A6H5JXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC8_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 6.870e-73
Identity = 157/175 (89.71%), Postives = 158/175 (90.29%), Query Frame = 1 
Query:    1 DCRAAMALARVRDEGGQTEEALKRAASIAEGNRARTKLVQQARRLSQALKAADKGTPVRSGRVSRKTFAKALAKEGGLGRVGEAELTR*SVLSMLLVRHGCSEQGGTYVNYPVFVASFTAAVMSADPSCAVAAVXXXXXXXXXXXXXXXAKKSSETFSGMVTGATPTKHKKENHE 525
            DCRAAMALARVRD GGQTEE LKRAA IAEGNRAR KLVQQARRLSQALKAADKGTPVRSGRVSRKTFAKALAKEGGLGRVGEAELTR      LLVRHGCSEQGGTYVNYPVFVASFTAAVM ADPS AVAA XXXXXXXXXXXXXXX K+SSETFSGM  GATPTKHKKEN E
Sbjct:  547 DCRAAMALARVRDGGGQTEEDLKRAALIAEGNRARAKLVQQARRLSQALKAADKGTPVRSGRVSRKTFAKALAKEGGLGRVGEAELTR------LLVRHGCSEQGGTYVNYPVFVASFTAAVMGADPSSAVAAXXXXXXXXXXXXXXXXXKESSETFSGMFAGATPTKHKKENQE 715
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11128.988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7F4_ECTSI1.240e-7390.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXC8_9PHAE6.870e-7389.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11128contigEcto-sp13_S_contig11128:1773..3491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size526
Hectar predicted targeting categoryother localisation
Exons3
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462578.1805196-UTR-Ecto-sp13_S_contig11128:1772..20171681462578.1805196-UTR-Ecto-sp13_S_contig11128:1772..2017Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11128 1773..2017 -
1681462578.1916444-UTR-Ecto-sp13_S_contig11128:2634..26481681462578.1916444-UTR-Ecto-sp13_S_contig11128:2634..2648Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11128 2635..2648 -
1681462578.2275918-UTR-Ecto-sp13_S_contig11128:3476..34911681462578.2275918-UTR-Ecto-sp13_S_contig11128:3476..3491Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11128 3477..3491 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462578.2018654-CDS-Ecto-sp13_S_contig11128:2648..28161681462578.2018654-CDS-Ecto-sp13_S_contig11128:2648..2816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11128 2649..2816 -
1681462578.211874-CDS-Ecto-sp13_S_contig11128:3392..34761681462578.211874-CDS-Ecto-sp13_S_contig11128:3392..3476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11128 3393..3476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11128.988.1prot_Ecto-sp13_S_contig11128.988.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11128 2649..3476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11128.988.1

>prot_Ecto-sp13_S_contig11128.988.1 ID=prot_Ecto-sp13_S_contig11128.988.1|Name=mRNA_Ecto-sp13_S_contig11128.988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MALARVRDEGGQTEEALKRAASIAEGNRARTKLVQQARRLSQALKAADKG
TPVRSGRVSRKTFAKALAKEGGLGRVGEAELTR*
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mRNA from alignment at Ecto-sp13_S_contig11128:1773..3491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11128.988.1 ID=mRNA_Ecto-sp13_S_contig11128.988.1|Name=mRNA_Ecto-sp13_S_contig11128.988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1719bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11128:1773..3491- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTGCCGGGCCGCCATGGCACTCGCTCGAGTGCGCGATGAAGGGGGGCA
GACCGAGGAAGCCCTCAAGCGTGCCGCTTCGATTGCCGAGGGGAACAGGG
TGAGCCTCGTCACACACATGTAGTTACTATTTTGTAGTTGTTGAAGGTAT
TAAATGAAGTTCACCCAGCGTCGTTGGGGCGCGTGGATCGCTTCTGTTCG
TCGATGTTTGTGGCTTTCGTAATTGGCGCGTTCATGAGTCGGACTGAGCT
TCCACGTCTGGGCGATGGAAGCTACGTAGTTCTTGGGCTTCCGCTATCCT
GCTCTTGGCTCTCTTCGTTCTTGATGATGCTGGTTCCAAGAATGGTGGAA
CACCGACGGGGTCTTCGAGCCATCATTATTGCGCCGTTTTGAAGGAGAGG
GTTTGTGATCACGGGGCTGCTGGATGCACATCGGAATTCGGCTGGTGTCG
TTCCTCGATTCGAGAAGAAAGGCTGATGGAGCTGACTGGTCTTCTGTGCG
TTCAGATCGAAACCTCCACGCCTGTTCAAAGCCTTATCCAGGCTGTTTCG
ATGGCTTTTGAGGGGGTCGAGTTACAGGGTCACGTATCCTATCCTTTGCT
GACCGTATCCGTGTGCCATGCTCGTAACTGGAAAAACACCCCACGTGTCG
TTCGGTACGTCTGGTGGGTGTTCAGGCCCGAACCAAGCTGGTCCAGCAGG
CCCGCCGCTTGTCCCAGGCCCTGAAAGCTGCGGACAAGGGGACGCCAGTC
AGAAGCGGTAGAGTGTCCCGCAAAACGTTCGCAAAGGCTCTCGCGAAAGA
GGGTGGGCTTGGCAGGGTGGGAGAGGCAGAGCTCACCAGGTAAAGTGTTC
TGAGTATGTTTTTGGATTCAATAGCTATGGTACGGCGAAGGAACGGGTAC
GAGAAAATACATGTACGCTGCACCGAACGGTGGCATCCTATTTTGTAGAC
GCTACATGGCTTGCGTCGAGAGCCAAATAACTCTTGCCTGCTCCAGCATA
CGGTGGGGAAATGTGTTTTCATGTTCATGTTTTTGTTGATCAGTTTTGGT
ATCTTCCGCATGATATACGCATGATGTACTGTAGTCCGGCGGGCAAGGGA
AGGCTCTCAGGCAACACAACAATCATCGCCTGTTTATAGCAATGCGGTCA
CAAAAAGCAGGGCGCGTGTAGACGCAAAGATGTTATCGCGGTGCTTGCAA
CTATCGAGGATTGTGCAATACAAAAAATCTGGGTGCGGTACGGAGACTGG
AGCGGACCGCACCACCCGAAACAGTTGTTCGAAGAATCGAGCCGTTCTGT
GCTTCCCCGATAAGTCTCACCGTGCCCGTACACGTTTCACGTCAGACCTG
ATCTCAAAAGGCGCCGGCTTGCACTAATGTATGCCCTCGCGATGCTCTCT
TCAACATAAACGGAACAAAAAGCATATGTTTCTTCCCCAACTCCATCTTG
CTCATATTTTCGGTTCATTGTCAGGCTTCTGGTCCGGCACGGTTGCTCCG
AGCAAGGTGGTACATACGTAAACTACCCGGTCTTCGTGGCCAGTTTCACC
GCTGCCGTAATGAGTGCGGACCCTTCATGCGCTGTAGCGGCGGTAGCCGC
CGCCAATGCGGCTGCTGCCGGCGCCGCGGCTGCTTCCGTGGCAAAGAAGA
GCTCTGAAACGTTCTCCGGAATGGTTACCGGAGCGACGCCCACCAAGCAC
AAAAAAGAGAACCACGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11128:1773..3491-

>mRNA_Ecto-sp13_S_contig11128.988.1 ID=mRNA_Ecto-sp13_S_contig11128.988.1|Name=mRNA_Ecto-sp13_S_contig11128.988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11128:1773..3491- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACTCGCTCGAGTGCGCGATGAAGGGGGGCAGACCGAGGAAGCCCT
CAAGCGTGCCGCTTCGATTGCCGAGGGGAACAGGGCCCGAACCAAGCTGG
TCCAGCAGGCCCGCCGCTTGTCCCAGGCCCTGAAAGCTGCGGACAAGGGG
ACGCCAGTCAGAAGCGGTAGAGTGTCCCGCAAAACGTTCGCAAAGGCTCT
CGCGAAAGAGGGTGGGCTTGGCAGGGTGGGAGAGGCAGAGCTCACCAGGT
AA
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