mRNA_Ecto-sp13_S_contig10073.99.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10073.99.1
Unique NamemRNA_Ecto-sp13_S_contig10073.99.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: D8LQ21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ21_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.180e-22
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1
Query:   13 QELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ 159
            +ELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVS IEAVDLSPGMLSQ
Sbjct:   62 EELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSGIEAVDLSPGMLSQ 110          
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: A0A6H5K3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-16
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 1
Query:   31 LLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ 159
            L A ATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ
Sbjct:  305 LEASATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ 347          
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: A0A836CG23_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG23_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.870e-11
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   16 ELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ 159
            +LR  + + A GRVLEV VGTGLNL +YRRD VS I+AVDLSP ML+Q
Sbjct:   49 QLRQIMTSTARGRVLEVAVGTGLNLPYYRRDRVSQIDAVDLSPSMLAQ 96          
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: A0A7S2B2V6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2V6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.570e-8
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   19 LRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLS 156
            LR+ L+  A+GRVLEVGVGTGLNL  Y    V+++E +DLS GMLS
Sbjct:    1 LRAMLIGKASGRVLEVGVGTGLNLPFYDTTRVTSLEGIDLSDGMLS 46          
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: A0A1F7PWI2_9BACT (Methyltransf_11 domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_73_47 TaxID=1802111 RepID=A0A1F7PWI2_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.970e-8
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   22 RSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQV 162
            R  L AG  GRVLEVG GTG NLRHY  D  +AI A DLSPGML ++
Sbjct:   39 RGPLFAGLKGRVLEVGAGTGKNLRHYGED--AAIVASDLSPGMLGRL 83          
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: Q47RZ4_THEFY (Phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase n=4 Tax=Thermobifida fusca TaxID=2021 RepID=Q47RZ4_THEFY)

HSP 1 Score: 55.8 bits (133), Expect = 6.220e-8
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   13 QELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ 159
            ++ R +L A A+GRVL+V VGTG NL HY  D V+ +  +DLSPGMLSQ
Sbjct:   40 KDTRQRLCAQASGRVLDVAVGTGRNLAHYSAD-VTEVVGIDLSPGMLSQ 87          
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: A0A6A0A1M2_HAELA (Methyltransf_11 domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A1M2_HAELA)

HSP 1 Score: 55.8 bits (133), Expect = 9.280e-8
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   16 ELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ 159
            ELR+ LLA A+G VLEV VGTGLNL  Y    V ++ AVDLS GML+Q
Sbjct:  146 ELRAXLLAQASGSVLEVAVGTGLNLPLYDWQQVKSVRAVDLSEGMLAQ 193          
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: A0A699ZZU6_HAELA (Methyltransf_11 domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZZU6_HAELA)

HSP 1 Score: 55.8 bits (133), Expect = 1.040e-7
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   16 ELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ 159
            ELR+ LLA A+G VLEV VGTGLNL  Y    V ++ AVDLS GML+Q
Sbjct:  178 ELRASLLAQASGSVLEVAVGTGLNLPLYDWQQVKSVRAVDLSGGMLAQ 225          
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: A0A8J9WTP0_9CHLO (Probable ubiquinone/menaquinone biosynthesis C-methyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WTP0_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.680e-7
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    7 FPQELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ 159
            FP ELR +L+A A G+VLE+ VGTGLNL  Y  D + ++ A+D+S GML Q
Sbjct:   48 FP-ELRRELIAEAHGKVLELAVGTGLNLPLYHPDQLESLSALDISAGMLQQ 97          
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Match: A0A061R1H8_9CHLO (Methyltransferase type 11 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R1H8_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 4.950e-7
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   16 ELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGMLSQ 159
            ELR  LL  A+G VLEVGVGTG+NL  Y +  VS++  VDLS GML +
Sbjct:  109 ELRRSLLRRASGNVLEVGVGTGINLPLYDKRKVSSVTGVDLSVGMLHE 156          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10073.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ21_ECTSI2.180e-2295.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3H3_9PHAE1.240e-1695.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CG23_9STRA6.870e-1166.67S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S2B2V6_9STRA1.570e-860.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1F7PWI2_9BACT2.970e-863.83Methyltransf_11 domain-containing protein n=1 Tax=... [more]
Q47RZ4_THEFY6.220e-857.14Phosphatidylethanolamine N-methyltransferase / pho... [more]
A0A6A0A1M2_HAELA9.280e-862.50Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A699ZZU6_HAELA1.040e-762.50Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A8J9WTP0_9CHLO2.680e-754.90Probable ubiquinone/menaquinone biosynthesis C-met... [more]
A0A061R1H8_9CHLO4.950e-758.33Methyltransferase type 11 n=1 Tax=Tetraselmis sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10073contigEcto-sp13_S_contig10073:436..600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score95.5
Seed ortholog evalue8.2e-18
Seed eggNOG ortholog2880.D8LQ21
Model size165
KEGG koko:K17803
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.methyltransferase activity
EggNOG OGsCOG0500@1,KOG4300@2759
Cds size165
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.4800143-CDS-Ecto-sp13_S_contig10073:435..6001681462505.4800143-CDS-Ecto-sp13_S_contig10073:435..600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10073 436..600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10073.99.1prot_Ecto-sp13_S_contig10073.99.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10073 436..600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10073.99.1

>prot_Ecto-sp13_S_contig10073.99.1 ID=prot_Ecto-sp13_S_contig10073.99.1|Name=mRNA_Ecto-sp13_S_contig10073.99.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MYFPQELRSQLLAGATGRVLEVGVGTGLNLRHYRRDLVSAIEAVDLSPGM
LSQV*
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mRNA from alignment at Ecto-sp13_S_contig10073:436..600-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10073.99.1 ID=mRNA_Ecto-sp13_S_contig10073.99.1|Name=mRNA_Ecto-sp13_S_contig10073.99.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10073:436..600- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTTCCCGCAGGAGCTACGATCACAGTTGCTAGCAGGCGCCACCGG GCGGGTGCTAGAAGTCGGGGTGGGCACGGGACTCAATCTGCGGCATTACC GGCGTGATCTCGTGTCGGCCATCGAGGCGGTGGACCTAAGTCCGGGCATG CTGAGCCAGGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10073:436..600-

>mRNA_Ecto-sp13_S_contig10073.99.1 ID=mRNA_Ecto-sp13_S_contig10073.99.1|Name=mRNA_Ecto-sp13_S_contig10073.99.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10073:436..600- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTTCCCGCAGGAGCTACGATCACAGTTGCTAGCAGGCGCCACCGG
GCGGGTGCTAGAAGTCGGGGTGGGCACGGGACTCAATCTGCGGCATTACC
GGCGTGATCTCGTGTCGGCCATCGAGGCGGTGGACCTAAGTCCGGGCATG
CTGAGCCAGGTTTGA
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