mRNA_Ecto-sp13_S_contig100701.97.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100701.97.1
Unique NamemRNA_Ecto-sp13_S_contig100701.97.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100701.97.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.790e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 RRSRLLLPAPPVGRHEAALVWKLFRLARDSTALRVHR 111
            RRSRLLLPAPPVGRHEAALVWKLFRLARD+TALRVHR
Sbjct:  338 RRSRLLLPAPPVGRHEAALVWKLFRLARDATALRVHR 374
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BLAST of mRNA_Ecto-sp13_S_contig100701.97.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.790e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 RRSRLLLPAPPVGRHEAALVWKLFRLARDSTALRVHR 111
            RRSRLLLPAPPVGRHEAALVWKLFRLARD+TALRVHR
Sbjct:  236 RRSRLLLPAPPVGRHEAALVWKLFRLARDATALRVHR 272
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100701.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMA8_ECTSI4.790e-1597.30Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ecto... [more]
A0A6H5K372_9PHAE4.790e-1597.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100701contigEcto-sp13_S_contig100701:2..157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score77.8
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog2880.D8LMA8
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1259@2759,KOG1859@1
Cds size156
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.3507166-CDS-Ecto-sp13_S_contig100701:1..1571681462505.3507166-CDS-Ecto-sp13_S_contig100701:1..157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100701 2..157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100701.97.1prot_Ecto-sp13_S_contig100701.97.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100701 2..157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100701.97.1

>prot_Ecto-sp13_S_contig100701.97.1 ID=prot_Ecto-sp13_S_contig100701.97.1|Name=mRNA_Ecto-sp13_S_contig100701.97.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
RRSRLLLPAPPVGRHEAALVWKLFRLARDSTALRVHRCSKCFRVFSGGVL
PG
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mRNA from alignment at Ecto-sp13_S_contig100701:2..157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100701.97.1 ID=mRNA_Ecto-sp13_S_contig100701.97.1|Name=mRNA_Ecto-sp13_S_contig100701.97.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100701:2..157+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACGCTCTCGCCTGCTGCTCCCGGCGCCCCCCGTGGGGCGGCACGAGGC
CGCCCTGGTGTGGAAGCTGTTCCGGCTTGCGAGGGACTCCACCGCGCTTC
GGGTGCACAGGTGTTCAAAGTGTTTTCGTGTGTTTAGTGGAGGCGTCCTC
CCTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100701:2..157+

>mRNA_Ecto-sp13_S_contig100701.97.1 ID=mRNA_Ecto-sp13_S_contig100701.97.1|Name=mRNA_Ecto-sp13_S_contig100701.97.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100701:2..157+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACGCTCTCGCCTGCTGCTCCCGGCGCCCCCCGTGGGGCGGCACGAGGC
CGCCCTGGTGTGGAAGCTGTTCCGGCTTGCGAGGGACTCCACCGCGCTTC
GGGTGCACAGGTGTTCAAAGTGTTTTCGTGTGTTTAGTGGAGGCGTCCTC
CCTGGG
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