mRNA_Ecto-sp13_S_contig1007.94.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1007.94.1
Unique NamemRNA_Ecto-sp13_S_contig1007.94.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 1.030e-107
Identity = 183/199 (91.96%), Postives = 188/199 (94.47%), Query Frame = 2 
Query:  134 QRSTMRVGDHALVLVSAMGLGEMGVLCKGIAAAKTCQLAVPAAESTRPRGNLGSERACGCGSARRLHWGFASRGRRVALGLRGGAPAVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAG---MPIAWRRSIRQTGSSSNPVHLLAGAVLAAIGAVVNGAVAVAAFPFVAAGKGVGAA 721
            ++STMR+GDHALVLVSA+GLGEMGVL KGIAAAKT QLAVPAAES RPRGNLGSERACGCGSARRLH GFASRGRRVALGLRGGA AVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAG   MPIAWRRSIRQTGSSSNPV LLAG VLAA+GAVVNG VAVAAFPFVAAGKGVGAA
Sbjct:   83 RQSTMRIGDHALVLVSALGLGEMGVLGKGIAAAKTYQLAVPAAESARPRGNLGSERACGCGSARRLHRGFASRGRRVALGLRGGALAVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGEECMPIAWRRSIRQTGSSSNPVQLLAGVVLAAVGAVVNGVVAVAAFPFVAAGKGVGAA 281
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BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: D7FHC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC4_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 4.640e-100
Identity = 163/174 (93.68%), Postives = 167/174 (95.98%), Query Frame = 2 
Query:  200 MGVLCKGIAAAKTCQLAVPAAESTRPRGNLGSERACGCGSARRLHWGFASRGRRVALGLRGGAPAVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPVHLLAGAVLAAIGAVVNGAVAVAAFPFVAAGKGVGAA 721
            MGVL KGIAAAKT QLAVPAAES RPRGNLGSERACGCGSARRLH  FASRGRR ALGLRGGAPAVSDRYNARMQV+ITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPV LLAGAVLAA+GAVVNGAVAV+AFPFVAAGKG+GAA
Sbjct:    1 MGVLGKGIAAAKTSQLAVPAAESARPRGNLGSERACGCGSARRLHRAFASRGRRAALGLRGGAPAVSDRYNARMQVIITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPVQLLAGAVLAAVGAVVNGAVAVSAFPFVAAGKGIGAA 174
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BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A7S3MDN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDN6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.840e-14
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:  410 NARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRS 580
            +A++Q MIT  M+  L DELGY  +EV+DM+PQIA+VVIE+SL RP+ GMP++WRRS
Sbjct:   61 SAKVQFMITNKMKATLKDELGYLPEEVEDMEPQIASVVIERSLTRPKKGMPVSWRRS 117
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BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A835YK24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK24_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.340e-14
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:  443 MRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRSIRQTGSSSNPVHLLAGAVLAAIGAVVNGAVAV 676
            MRK L D L Y  +EV+DM+PQIAA+VIEK LPRPRAGMPIAWR+S R+  S+S      A   LAAI  V  G VAV
Sbjct:    1 MRKTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPIAWRKSFRRRESASRGPSSRA---LAAIRGVAAGPVAV 75
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BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: W7TF16_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TF16_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.010e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 2 
Query:  383 GAPAVSDRYNARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRR 577
            G     D+YNA+MQ +IT  M+KVL +EL Y A EV+ M P +AAVVI K L RP+ GMP  WR+
Sbjct:  204 GGNMKKDKYNAKMQWLITNKMKKVLREELHYEAAEVEAMMPDVAAVVINKHLERPKRGMPAEWRK 268
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BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A7S2XQL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQL8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.640e-8
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:  419 MQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAW 571
            +Q MIT NMR+VL+DELGY   EV  M P +AAVV++K L RP +GMP  W
Sbjct:  126 VQYMITLNMRRVLVDELGYLPREVKHMRPDVAAVVVDKMLKRPSSGMPTPW 176
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BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Match: A0A7S4IQ15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQ15_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.930e-5
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:  413 ARMQVMITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRR 577
            A +Q  ITRNMR++L+ ELGY   EV+ M P +AAV+  K L RP  GMP  + R
Sbjct:  196 ATVQYAITRNMRRLLVQELGYTRHEVERMKPDVAAVLTTKRLRRPGGGMPREFYR 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1007.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K5S7_9PHAE1.030e-10791.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHC4_ECTSI4.640e-10093.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3MDN6_9STRA1.840e-1461.40Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835YK24_9STRA5.340e-1460.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TF16_9STRA5.010e-1153.85Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2XQL8_9STRA2.640e-858.82Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4IQ15_9STRA1.930e-550.91Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1007contigEcto-sp13_S_contig1007:15232..19358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size721
Hectar predicted targeting categoryother localisation
Exons4
Cds size591
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.185069-UTR-Ecto-sp13_S_contig1007:15231..153611681462505.185069-UTR-Ecto-sp13_S_contig1007:15231..15361Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1007 15232..15361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462505.1945531-CDS-Ecto-sp13_S_contig1007:15361..155331681462505.1945531-CDS-Ecto-sp13_S_contig1007:15361..15533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1007 15362..15533 +
1681462505.2026646-CDS-Ecto-sp13_S_contig1007:16437..165861681462505.2026646-CDS-Ecto-sp13_S_contig1007:16437..16586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1007 16438..16586 +
1681462505.2113092-CDS-Ecto-sp13_S_contig1007:17540..176431681462505.2113092-CDS-Ecto-sp13_S_contig1007:17540..17643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1007 17541..17643 +
1681462505.219425-CDS-Ecto-sp13_S_contig1007:19191..193581681462505.219425-CDS-Ecto-sp13_S_contig1007:19191..19358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1007 19192..19358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1007.94.1prot_Ecto-sp13_S_contig1007.94.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1007 15362..19358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1007.94.1

>prot_Ecto-sp13_S_contig1007.94.1 ID=prot_Ecto-sp13_S_contig1007.94.1|Name=mRNA_Ecto-sp13_S_contig1007.94.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MQRSTMRVGDHALVLVSAMGLGEMGVLCKGIAAAKTCQLAVPAAESTRPR
GNLGSERACGCGSARRLHWGFASRGRRVALGLRGGAPAVSDRYNARMQVM
ITRNMRKVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPIAWRRS
IRQTGSSSNPVHLLAGAVLAAIGAVVNGAVAVAAFPFVAAGKGVGAA
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mRNA from alignment at Ecto-sp13_S_contig1007:15232..19358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1007.94.1 ID=mRNA_Ecto-sp13_S_contig1007.94.1|Name=mRNA_Ecto-sp13_S_contig1007.94.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4127bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1007:15232..19358+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGTCAGGGAGATGTGCCGTGTCGCCGACGTGTCGTGTGTGTTGTTTGG
AAGGGTTCTAACGCGCATGAGTCGCGTTGAACACGACGTAGCACTCATTT
TTTTGTCCTCGTCAATCTGTCGATCTGGACATGCAGCGAAGCACAATGAG
AGTCGGGGATCATGCTCTGGTGCTAGTGTCCGCGATGGGTTTGGGGGAGA
TGGGAGTGCTCTGCAAGGGTATAGCTGCGGCAAAGACTTGCCAACTGGCC
GTCCCCGCAGCTGAATCTACTCGACCTCGAGGGAACCTTGGCAGCGAAAG
AGGTAGGCAACCGAGGTCACCTGCTTGCCTTCTTGAGGAAGAACCGCTGT
AAATACATATTTTTTTTCGCGGGGGACGCACGTGAACAGCGCGGTCCTTC
AGCAGGAGCCCGCGGTTGCGCAAGGTTCTGTCAAGGCCAGGAGGTCTTCA
TCCCCCCGAAAGTCGGGCGATCTCGTCAAGCAGCACGTATCAGCGGTACA
AGTGTAGATCATACGCTGCATCCTACGCAGCAGAAACCTATGCTCGACCG
CGGCGATGAAATTCGGCGGTTGTCAACTCCGGGCCGCTTTGCTTTGTTTG
AAGCGACCTCAAGAATTCGAACCGATGAGAGTGTTGGCACTCTGCCGGTT
ATGTTTACCTTTTTTATGCATGCGTGAAGCACATGATTGCGTTGCATGTG
AGCCTCGCTGTTCGTGTGTGAATTTTGCTCCATCCCTTGTTGCAGCTCTC
GGCAGCAATGATAGCAGACTTAACCCTTTAAGAACTCAGAAGGTTGAAGG
TTAAAATTCCCAAACAAGAATCGCATCCGCTCGATTTGGAGAGACCGTAC
AGTCCCGAGGGACGAAGGTTGACTTGGTTAGAGGCAGAAAAGTGTCCCCA
AGTGCATGGGGACGCTTTCAATTCTGAAGCCAAGTCAGCGTTTATGTTTT
GTTCAGTTCTAGGGGATGCAGCCTTTTCCCAACAAGGGGGCGCGCGGTTG
GGAGACATGTGTACAGCAAGTTGAGGGCCGAGGAGAGACATCACGCAGCC
TTCCACTTCACGCAAGCATGGTAGACCAAGGTTTGCCACGCGTGTTTCAC
ACTCTGGCGAGCCAAAGGACTCACGCGCGTGGCAAATCGTCTCGTTCACA
TCCTCTTGCATCCGACCGCAGGACAAACTCCTTCTCCGCTTGCTTTTTTC
TGACAGCTTGCGGCTGCGGCAGTGCTCGGCGGTTGCACTGGGGTTTCGCT
TCGAGGGGGAGGCGTGTTGCGCTGGGGTTGCGGGGAGGGGCACCCGCGGT
GTCGGACCGGTACAACGCGCGGATGCAAGTCATGATAACGAGGAACATGC
GAAAGGTATGTACCAAGTGAACACAAGGCCGTTGAACGTTACAATTTTGC
ACCACAAAACCAAGGAAACAAGGACGTCGTGGAGTGGTTCATGGCAGAGA
GCCCGCCGACGTCGCCTCAGAGAAGCAGCTGTGCAGCATCTTTGTGACCG
CGAGGCGAACTGGTGTCTTTTACATCTCTTTTTTTTTTCTGTGCACCCGC
CGTGGGGAAGGGTGGGGAGCGTTACGGGCGTTTGTTTTCTGCATGGCGCT
TTGTTTCCAAAGTTTTGGAATGTGTGCGAAGTAGGGGACCATTGCGAAGT
AAGTTCGAAGGCAACACATTTGGGCATTTTCAAAATCCGGAATCTACCGT
TCAAACTTTTCTGGGGCCTACTCACTTCTACTTTTTTTGAAAATTTTCCA
GAGTTTTCGAGCAGTTCCATTTTTTTCGAGACAGCGCTTACTTCCTATTT
TTTGGACGTATACCAATCTTCAGGACGTAATGAATCTGAAGAAATCAGGC
CGTCAAAATCTCCCCTGAAGGCCCGTTCTCTGCCGGACGCACACTGTTTG
TTGCTGCGGTCTGAGCCCTGCCAAAGGCCTCATCAGATACCCGTTACTGC
ACTCCCCCTCGGCGCTTTGGCTGGTAATGACCATCGAGCTCACCCGTGGA
CATGAGCTTGGCAACACCGGCAGCAGACATGTAGCCACAACTGGTTGGGT
GGTTTACTGAAACGCTACCTAACCTCTGCTGACCTCTTTCAGAGGCAAGC
GCTGCAGCCACCTGGGGAACCCTTTATATGTTCATCACTCCCGTGGAGTA
TTAGGCTTTAACAACATGCGACATGGTTAAAGGCTCCTAGTTTCCAGCGC
CACCGTACCGCTGTTGCGGCTTCGCTGCAGTAACGATGACGACGGGAATG
ACAGCGAAGGTCGCTCTTGGTGTTCTGTCGATCCGCGTGTGGCTATCGTC
TTTGGTCAGGTTTTGATGGATGAGCTCGGCTATGCCGCGGATGAGGTGGA
CGACATGGACCCTCAGATAGCGGCGGTCGTGATCGAGAAGTCGCTGCCCA
GGCCACGAGCAGGCGAGTCTACGTAGACCACGTGTCGCCATCAACCGAGC
GGCTCATCTGCTGCGCTCTTGACGGAGTGTGTGTGTTTGTTCGTCCCATC
CAATCTGGCGCCAGTCTCCAGGCCTTGAAGCGTGTACATGAGTGCCCCGG
AAGACTCTCAAGGAATGTTTTAGATAAGGGGCCTCGAGTTTATTGATGGT
TCACACGTGATCTAAGAGGCTATGTCGCACGCGGTACACGACATCGTACG
TACGCGTTCCCTTCAAGTTACATTTGGGTGGGCTTCTCGTCCAACCGTCT
GTAGATATACCGAAAGAGTCGGAGAGATGGCACACCCCCTAGACCGACTT
TTAAGGCTCGATTACTCCACGACCAAGATTGTCTGTACCGCACCGTATAC
CGTACCGCGGTATTCCGTAGGAGTCGGAGAGATGACACACCCCCTTGACC
GACTTTCAAGGCTCGATTACTCCACGACCAAGATTGTCTGTACCGCACCG
TATACCGTACCGCGGTATTCCGTAGGAGTCGGAGAGATGACACACCCCCT
TGACCGACTTTCAAGGCTCGATTACTCCACGACCGAGATTGTCTGTACCG
TACCGTATACCGCACCGCGGTATTCCGTAGGAGTCGGAGAGATGGCACCC
CCCCTAGACCGACTTTCAAGGCTCGGTTGCTCCATACGCAAGCGGGTGCA
GAAAAGAACCCGATACATTTACGGGAAGCCCTCGACGAGATGCTTCCAGA
AACACCAAAGTTGGTGTTGGCACAAGCTCGTTTTTGGAGCAATCGAGCTT
TGGAAACAGGTCATGTGCCATCGCTTCCGCCTCTTCGGGTGTGTACTCCA
TATTACCCACCCGCATGGTCTTGAACCACACGAGCTCCGATCCGGAATCA
CACAGGAGAAAATGCGGTCAAATGTCGGGGTTGGTGCTATCGATACTCGG
GTATGTTGGCCATCCTTCTAAAACCTGCTGCGGCCTAGGGAAAATCAAGC
GATACGTCTTGCTTGTTGGCTCTCAAGGTTCGACTGTCGGGCACACAGCA
TTATCTTTGCGTTGTTTGTTTACTAATCGGCAGACAAACTAGGTCCTGGT
GTCGTGGGCTGTTCACTACCTTTTTTCCGAGCAGTAGATGGCAACGGTGG
GGATATGCCAACAACACTCTGTTGAATCTGGTTTTGTCTTGAACCGCACT
GTGTACTAAAGTGCCCCCCCCGGTGTAAGCGACCCCTGGTGTCACGACGA
AATGTGACCGCTATTGAGGGCAAGTCGCTCAACTGAACTAACAATCACAT
AGCAGTTATACTACCGGGATGCGGCGGTGCCACGTGATTTTGTGGTCGCT
AAACAGCGAATGTCGCCAAGCCGAGACCCCCACTGTACGTGGATTTCTCA
TGGTCGAGACTAACGAAAACAATATCTCTCAACCGTAGCCGTCGCTGTGC
CATCGATAGCCGCATGCCAAAGAGCTGGCGGCGTTTCTTCCCACTCTCTA
ATAGCCCCCACGGCGTTCTACCCCCAAGACGTCATCGTGGACTCAATCCA
TCCCCTCCAGGCATGCCGATCGCGTGGCGGCGGAGCATCAGACAGACGGG
GAGCTCCTCCAACCCCGTCCACCTCCTCGCCGGAGCTGTCCTTGCCGCGA
TAGGGGCCGTCGTGAACGGAGCCGTGGCGGTGGCGGCGTTCCCATTTGTT
GCAGCGGGGAAAGGGGTCGGGGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1007:15232..19358+

>mRNA_Ecto-sp13_S_contig1007.94.1 ID=mRNA_Ecto-sp13_S_contig1007.94.1|Name=mRNA_Ecto-sp13_S_contig1007.94.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1007:15232..19358+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCGAAGCACAATGAGAGTCGGGGATCATGCTCTGGTGCTAGTGTC
CGCGATGGGTTTGGGGGAGATGGGAGTGCTCTGCAAGGGTATAGCTGCGG
CAAAGACTTGCCAACTGGCCGTCCCCGCAGCTGAATCTACTCGACCTCGA
GGGAACCTTGGCAGCGAAAGAGCTTGCGGCTGCGGCAGTGCTCGGCGGTT
GCACTGGGGTTTCGCTTCGAGGGGGAGGCGTGTTGCGCTGGGGTTGCGGG
GAGGGGCACCCGCGGTGTCGGACCGGTACAACGCGCGGATGCAAGTCATG
ATAACGAGGAACATGCGAAAGGTTTTGATGGATGAGCTCGGCTATGCCGC
GGATGAGGTGGACGACATGGACCCTCAGATAGCGGCGGTCGTGATCGAGA
AGTCGCTGCCCAGGCCACGAGCAGGCATGCCGATCGCGTGGCGGCGGAGC
ATCAGACAGACGGGGAGCTCCTCCAACCCCGTCCACCTCCTCGCCGGAGC
TGTCCTTGCCGCGATAGGGGCCGTCGTGAACGGAGCCGTGGCGGTGGCGG
CGTTCCCATTTGTTGCAGCGGGGAAAGGGGTCGGGGCGGCG
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