mRNA_Ecto-sp13_S_contig11069.935.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11069.935.1
Unique NamemRNA_Ecto-sp13_S_contig11069.935.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11069.935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11069contigEcto-sp13_S_contig11069:1357..1908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462574.0282614-CDS-Ecto-sp13_S_contig11069:1356..14351681462574.0282614-CDS-Ecto-sp13_S_contig11069:1356..1435Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11069 1357..1435 +
1681462574.0369897-CDS-Ecto-sp13_S_contig11069:1832..18791681462574.0369897-CDS-Ecto-sp13_S_contig11069:1832..1879Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11069 1833..1879 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462574.045317-UTR-Ecto-sp13_S_contig11069:1879..19081681462574.045317-UTR-Ecto-sp13_S_contig11069:1879..1908Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11069 1880..1908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11069.935.1prot_Ecto-sp13_S_contig11069.935.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11069 1357..1879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11069.935.1

>prot_Ecto-sp13_S_contig11069.935.1 ID=prot_Ecto-sp13_S_contig11069.935.1|Name=mRNA_Ecto-sp13_S_contig11069.935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
GFRGSDLLKIQKDRHQLLWRPERRNTGSVLSFRDYLWSQTS*
back to top

mRNA from alignment at Ecto-sp13_S_contig11069:1357..1908+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11069.935.1 ID=mRNA_Ecto-sp13_S_contig11069.935.1|Name=mRNA_Ecto-sp13_S_contig11069.935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11069:1357..1908+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTTTCGTGGCAGCGATTTACTCAAGATACAAAAAGACCGCCACCAGCT
GCTGTGGCGCCCGGAACGACGAAACACAGGTGGGTGCGGCGGTAGACCGC
AAGAAACGTGTTGTTGGCACCGACAGCCTTGAGGAGTGAATTTTTACTGT
AGACAAATCAGCATGCGGGATCGTATACGCTCTCGTTCTGGTGCTGTCTC
CAGTTTAAATTGAGAATTCCCCCACTAGAACGAAAACCAAAAGTTCATTT
TTGTCTCTTGGTCGCGGCTCCCAGCACTCGATCGACGAATCGACCACCTT
GGCATATTTCTTACGTCTGGAACTGTCGGATCCGTACCATGCACCAGCTT
CCAAGCTGAGGATGTTTTCGCTTCTGACATTCGTTGTTGAGCAGAAAGAG
CGGCACACGGATTGTTCGAGGACTTCATGTTCTGACGGGTAGAGTTTGCT
TTTCCATAATAACACCAACATAACAGGTTCTGTTCTGTCCTTCCGGGACT
ACCTGTGGAGTCAAACCTCCTGATCCCTGTGTCTGTTCTTATTTCTGTCG
AC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11069:1357..1908+

>mRNA_Ecto-sp13_S_contig11069.935.1 ID=mRNA_Ecto-sp13_S_contig11069.935.1|Name=mRNA_Ecto-sp13_S_contig11069.935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11069:1357..1908+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTTTCGTGGCAGCGATTTACTCAAGATACAAAAAGACCGCCACCAGCT
GCTGTGGCGCCCGGAACGACGAAACACAGGTTCTGTTCTGTCCTTCCGGG
ACTACCTGTGGAGTCAAACCTCCTGA
back to top