mRNA_Ecto-sp13_S_contig10069.92.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10069.92.1
Unique NamemRNA_Ecto-sp13_S_contig10069.92.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: D7FLL2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL2_ECTSI)

HSP 1 Score: 707 bits (1825), Expect = 4.640e-249
Identity = 409/539 (75.88%), Postives = 421/539 (78.11%), Query Frame = 1 
Query:  277 MFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRRNGVRPGRNKGKGGKRSPRKAIQLEHLSTMMRLDEKSATGTTTNNTPAPNGVATGTASTTAPGNGCAQTPTNALPSPSPAPGDAMKRPSETRKRGSGGNDDSNDSSXXXXXXPATTAKIDDAVGYDTRDGSGE-EGRQARRGGDGGHEKGTGDGGTPRKRRSGSRGVVAVEGDEGGRGASENKTPRFSMQAPRASREGTNTHRV--TPSHAGGASQPATLRQGTPTNGPPTGASATDNVATTPQPRQTYPLPIDAGGRGTSAWARGGGEGTRISGGGVPPGFAGGVSEEESAPCRRRKKESRVDSPLAAAARAAAVYELPALRETAATKRRSH 1884
            MFASLDLEQKELKKLWIEFGKIDTDNGGT                                                NHESLVRFAFDLF      AIETAEMEAMLRE+YGE F DSPAAALTLKRVKELSSSSDAGPTN TT+L LA+ GVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVS AFWKGCADRRNGVRPGRNKGKGGKRS RKAIQLEHLSTMM LDEKSATGTTT+NTPAPNG ATGTA+TTA GNGCAQTPT ALPS     GD +K PSE RKRGSG         XXX   PAT  K DDA G DT DG+GE E  QARRGGDGGHEKGTGDGGTPRKRRSGSRGVVAVEGDEG  G SENKTPRFSMQAP+ASREGT THRV  TPSH GGAS+PATLRQG PTNGPPTG SATDN   TPQPRQTYPLP+DAGGRGTSAWARGGGE   I     PPG AGGV  EESAP RR+KKESRVDSPLAAAARAAAVYELPALRETAATK+RSH
Sbjct:    1 MFASLDLEQKELKKLWIEFGKIDTDNGGT------------------------------------------------NHESLVRFAFDLFDRDHSGAIETAEMEAMLREVYGEHFADSPAAALTLKRVKELSSSSDAGPTNETTLLALAKNGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSEAFWKGCADRRNGVRPGRNKGKGGKRSSRKAIQLEHLSTMMNLDEKSATGTTTDNTPAPNGSATGTANTTAQGNGCAQTPTKALPSXXXXXGDEIKAPSEARKRGSGXXXXXXXXXXXXSKTPATAGKTDDAAGCDTPDGAGEKEEGQARRGGDGGHEKGTGDGGTPRKRRSGSRGVVAVEGDEGSWGGSENKTPRFSMQAPQASREGTTTHRVSGTPSHGGGASRPATLRQGAPTNGPPTGTSATDNAVKTPQPRQTYPLPVDAGGRGTSAWARGGGEEPMIGXXXXPPGLAGGVGIEESAPGRRQKKESRVDSPLAAAARAAAVYELPALRETAATKQRSH 491
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BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A6H5KR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR14_9PHAE)

HSP 1 Score: 709 bits (1829), Expect = 1.030e-248
Identity = 430/576 (74.65%), Postives = 444/576 (77.08%), Query Frame = 1 
Query:  277 MFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWK--------------------------------GCADRRNGVRPGRNKGKGGKRSPRKAIQLEHLSTMMRLDEKSATGTTTNNTPAPNGVATGTASTTAPGNGCAQTPTNALPSPSPAPGDAMKRPSETRKRGSGGNDDSNDSSXXXXXXPATTAKIDDAVGYDTRDGSGEEGR-QARRGGDGGHEKGTGDGGTPRKRRSGSRGVVAVEGDEGGRGASENKTPRFSMQAPRASREGTNTHRV--TPSHAGGASQPATLRQGTPTNGPPTGASATDNVATTPQPRQTYPLPIDAGGRGTSAWARGGGEGTRISGGGVPPGFAGGVSEEESAPCRRR-----KKESRVDSPLAAAARAAAVYELPALRETAATKRRSH 1884
            MFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPF YRLFGIXXXXXXXXXXXXEFVVSTWNCCTM                      TAEMEAMLRE+YGERF DSPAAALTLKRVKELSSSSDAGPTN TTILELA+KGVQV PDGRIYALSFEAFREFCRQHAGML PAFTLQKRVRSKIVS AFWK                                 CADRRNGVR  RN+GK   R P+K+IQLEHLSTMM LDEKSATGTTT+NTPAPNG AT            AQTP  ALPSPSPA GD +  P + RK GSGGND  N+SS      PAT  KIDDA G +T DGSGE+   QARRGGDGGHEKGTGDGG PRKRRSGSRGVVAVEGDEG  G SENKTPRFSMQAP+ SREG N HRV  TPSH GGASQPATLRQGTPTN PPTG SATDNVA TPQPRQTYPLPIDAGGRGTSAWARGGGE   +  GGVPPGFAGGV EEESAP RR      KKESRVDSPLAAAARAAAVYELPALR+TAATKRRSH
Sbjct:    1 MFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFAYRLFGIXXXXXXXXXXXXEFVVSTWNCCTM----------------------TAEMEAMLREVYGERFADSPAAALTLKRVKELSSSSDAGPTNETTILELAKKGVQVAPDGRIYALSFEAFREFCRQHAGMLLPAFTLQKRVRSKIVSEAFWKVKPLVNRSLSTYGSSVRCLIPPHLCPDFPFEKECADRRNGVRQDRNRGKRENRPPQKSIQLEHLSTMMSLDEKSATGTTTDNTPAPNGSATXXXXXXXXXXXSAQTPKKALPSPSPALGDGIIAPPKARKSGSGGNDYCNNSSGSSSKTPATAEKIDDAGGCNTPDGSGEQMEGQARRGGDGGHEKGTGDGGAPRKRRSGSRGVVAVEGDEGSGGGSENKTPRFSMQAPQGSREGPNAHRVSGTPSH-GGASQPATLRQGTPTNDPPTGTSATDNVAKTPQPRQTYPLPIDAGGRGTSAWARGGGEEPLLGWGGVPPGFAGGVGEEESAPGRRPPDRRLKKESRVDSPLAAAARAAAVYELPALRDTAATKRRSH 553
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BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A7S3XL51_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL51_HETAK)

HSP 1 Score: 105 bits (262), Expect = 6.030e-22
Identity = 75/212 (35.38%), Postives = 110/212 (51.89%), Query Frame = 1 
Query:  280 FASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRRNGVRPG 915
            F SL L  +++  L   +  ID DN GT+ ++EL+++  L  + F  R+F I            EFVVS WN CT+   +LV FAFDL XXXXXX     E+E ML+E+YGE F  S  A   L+ ++ +         +G   L L+ +  +V         + E F +FCR+HA +L PAFT+Q+ +R  +     W+  + RR  V  G
Sbjct:   27 FKSLGLHNRDVWALHSSYAAIDGDNSGTIEVKELMAYLGLH-SQFTNRVFRIFDEDGSGELDFREFVVSMWNYCTLAKNALVMFAFDLXXXXXXXXXXXXEVELMLKEVYGEGFQASQLAQKVLRHMRMI---------DGDARLPLSMQRCEV---------TAEQFGQFCRKHATLLLPAFTMQETLREAVGGKRLWERLSRRRFEVSDG 219
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BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A7S3M126_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M126_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.630e-20
Identity = 65/231 (28.14%), Postives = 106/231 (45.89%), Query Frame = 1 
Query:  211 MGHHPSSFNKANFKRGIRGYRQMFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYG--ERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRR 897
            MG   S+F+        +     + ++ L +KE++KL+ EF K+D DN G++ + ELL+H DL  T +  ++F I            EFV++ WN CT+   +L  FAFDL+       I   E+  ML +++G  E  T+  A  +  + +    +  D                            + + FR F + H  +LFPAF +Q  ++ K +  AFW+  ADRR
Sbjct:    1 MGCSTSAFDNEKHSPQFQKDLVQYRAMQLSEKEVRKLYNEFRKVDMDNSGSIGLPELLAHLDLPVTDYTQKVFSIFDEDRSGEVEFKEFVMTLWNYCTLTSSTLEMFAFDLYDSDGSGEISPNEVTQMLTDLFGKHEVKTNQHAKVMAAELLDHAKNFRDP--------------------------FTIDTFRAFVKTHQALLFPAFQMQLALQRKFLGTAFWEKNADRR 205
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BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A7S4A064_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A064_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.360e-19
Identity = 75/239 (31.38%), Postives = 110/239 (46.03%), Query Frame = 1 
Query:  193 RS*LDQMGHHPSSFNKANFKRGIRGYRQMFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRRNGVR 909
            R+ L   G+  S ++K      +R  R  F SL L++ ++ +L  +F  ID D  G + + ELL + DL    F  R+F I            EFVV+ W  CT+    LV F     XXXXXX        AML+E+YG+R++ +  A   L+ +  ++   D    +                         EAF EFCR H  ML PAF +Q  +R++I+ GA+W    DRR+  R
Sbjct:  224 RNNLYHYGYFKSIYSK---NAAVRPLRSTFESLGLKEDDVARLHEQFVIIDKDGSGAIELWELLDYLDLQRNRFAKRVFAIFDADGSNQIDFKEFVVALWQYCTLGRPQLVMFXXXXXXXXXXXXXXXXXFNAMLKELYGKRYSKNTTAVNLLRHINAMTKRRDTDEVD------------------------VEAFAEFCRTHPAMLMPAFAMQTTMRARIMGGAWW----DRRSNER 431
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BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: D7FMZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ9_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 9.060e-16
Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = 1 
Query:  412 FGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFWKGCADRR 897
            F  R+F I            EFV+S WN CT++  +L+ FAFDL+       I+  E+E +L+E+YG  F  +  A   + +++                      G ++G    I   + + FREFCR H  +L+PAF LQ +++ KI+   FW  C++ R
Sbjct:    6 FTKRIFRIFDEDGSGSVDFREFVMSLWNYCTLSKAALIMFAFDLYDNDNSGEIDIGEVELLLKEVYGREFQSNTHAQTIMAKLR----------------------GSELGLARNI---NVDQFREFCRTHPAVLYPAFVLQTQMQEKILGSKFWIACSNAR 142
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BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A7S4RTF3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RTF3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.250e-13
Identity = 48/203 (23.65%), Postives = 94/203 (46.31%), Query Frame = 1 
Query:  268 YRQMFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFTPFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYGERFTDSPAAALTLKRVKELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAGMLFPAFTLQKRVRSKIVSGAFW 876
            +   F++L  +++ ++K W+ F +I+    G ++I E L++ ++D  P+  + F              EF+VS WN CT+N E+L  F FD++       +   E+E M++E +G+   +S      L+ V   +                 E+G           L+  +F  F   H+ +LFP F +Q+ +++K++   +W
Sbjct:   50 WEMTFSALGWDRETIEKFWVVFCRINKSLSGEITILEFLNYFNMDRAPYVEKCFSYFDTTGGDDIDFLEFMVSVWNICTLNVETLTNFTFDIYDIDSDGELSFPEIERMVQEFFGKEGIESGLGKECLRDVTHFAE----------------ERGG---------VLNLTSFTVFTMNHSMLLFPIFQIQRIIQTKVMGLRYW 227
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BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Match: A0A482RZW0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZW0_9ARCH)

HSP 1 Score: 76.3 bits (186), Expect = 9.750e-13
Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:  259 IRGYRQMFASLDLEQKELKKLWIEFGKIDTDNGGTVSIRELLSHCDLDFT-PFGYRLFGIXXXXXXXXXXXXEFVVSTWNCCTMNHESLVRFAFDLFXXXXXXAIETAEMEAMLREIYG 612
             + Y+  F +L  +  E+ +L   F  ID D+ G++ ++ELL+H D++    F  R+F I            EFV+S WN CT++  +L  FAFDL+       +   E+E +L+++YG
Sbjct:   16 FKPYKSQFEALKFKPTEVVRLKRIFDSIDIDHSGSIGLKELLTHLDIESNNKFSKRVFSIFDEDGSGQVDFREFVLSIWNYCTLSQATLALFAFDLYDADRTGFLSPVEIEGILKDLYG 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10069.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FLL2_ECTSI4.640e-24975.88EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KR14_9PHAE1.030e-24874.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XL51_HETAK6.030e-2235.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3M126_9STRA4.630e-2028.14Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4A064_9STRA1.360e-1931.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D7FMZ9_ECTSI9.060e-1630.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4RTF3_9STRA1.250e-1323.65Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A482RZW0_9ARCH9.750e-1331.93Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10069contigEcto-sp13_S_contig10069:368..5647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score85.5
Seed ortholog evalue8.6e-14
Seed eggNOG ortholog2880.D7FMZ9
Model size1884
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs2CXXS@1,2S4MR@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-17_000720.1
Cds size1674
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10069.92.1prot_Ecto-sp13_S_contig10069.92.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10069 578..5647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.8986027-UTR-Ecto-sp13_S_contig10069:367..5771681462504.8986027-UTR-Ecto-sp13_S_contig10069:367..577Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10069 368..577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.908054-CDS-Ecto-sp13_S_contig10069:577..7301681462504.908054-CDS-Ecto-sp13_S_contig10069:577..730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10069 578..730 +
1681462504.91628-CDS-Ecto-sp13_S_contig10069:1367..14351681462504.91628-CDS-Ecto-sp13_S_contig10069:1367..1435Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10069 1368..1435 +
1681462504.9246266-CDS-Ecto-sp13_S_contig10069:1917..19931681462504.9246266-CDS-Ecto-sp13_S_contig10069:1917..1993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10069 1918..1993 +
1681462504.9327981-CDS-Ecto-sp13_S_contig10069:2266..23321681462504.9327981-CDS-Ecto-sp13_S_contig10069:2266..2332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10069 2267..2332 +
1681462504.9435103-CDS-Ecto-sp13_S_contig10069:2536..26271681462504.9435103-CDS-Ecto-sp13_S_contig10069:2536..2627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10069 2537..2627 +
1681462504.9558868-CDS-Ecto-sp13_S_contig10069:2968..30891681462504.9558868-CDS-Ecto-sp13_S_contig10069:2968..3089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10069 2969..3089 +
1681462504.9643283-CDS-Ecto-sp13_S_contig10069:3361..34551681462504.9643283-CDS-Ecto-sp13_S_contig10069:3361..3455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10069 3362..3455 +
1681462504.9726386-CDS-Ecto-sp13_S_contig10069:3602..41841681462504.9726386-CDS-Ecto-sp13_S_contig10069:3602..4184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10069 3603..4184 +
1681462504.980477-CDS-Ecto-sp13_S_contig10069:5224..56471681462504.980477-CDS-Ecto-sp13_S_contig10069:5224..5647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10069 5225..5647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10069.92.1

>prot_Ecto-sp13_S_contig10069.92.1 ID=prot_Ecto-sp13_S_contig10069.92.1|Name=mRNA_Ecto-sp13_S_contig10069.92.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=558bp
MGHHPSSFNKANFKRGIRGYRQMFASLDLEQKELKKLWIEFGKIDTDNGG
TVSIRELLSHCDLDFTPFGYRLFGIFDVDNSGAVDFREFVVSTWNCCTMN
HESLVRFAFDLFDRDHSGAIETAEMEAMLREIYGERFTDSPAAALTLKRV
KELSSSSDAGPTNGTTILELAEKGVQVGPDGRIYALSFEAFREFCRQHAG
MLFPAFTLQKRVRSKIVSGAFWKGCADRRNGVRPGRNKGKGGKRSPRKAI
QLEHLSTMMRLDEKSATGTTTNNTPAPNGVATGTASTTAPGNGCAQTPTN
ALPSPSPAPGDAMKRPSETRKRGSGGNDDSNDSSGSSSKKPATTAKIDDA
VGYDTRDGSGEEGRQARRGGDGGHEKGTGDGGTPRKRRSGSRGVVAVEGD
EGGRGASENKTPRFSMQAPRASREGTNTHRVTPSHAGGASQPATLRQGTP
TNGPPTGASATDNVATTPQPRQTYPLPIDAGGRGTSAWARGGGEGTRISG
GGVPPGFAGGVSEEESAPCRRRKKESRVDSPLAAAARAAAVYELPALRET
AATKRRSH
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mRNA from alignment at Ecto-sp13_S_contig10069:368..5647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10069.92.1 ID=mRNA_Ecto-sp13_S_contig10069.92.1|Name=mRNA_Ecto-sp13_S_contig10069.92.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5280bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10069:368..5647+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTAACGCTTTGGTCGATGGTGTGTACAGACAGCGGCATGGCTTTGCGG
GCGTGATAAATTGTAGTTCCTGTTGGTTGTGTCGCAGACGACGGGTCGCC
GACATCCCACAGTGACTGCTGCGGCCAGTCGTGTTTTGTCGCCGGCGACG
CGGACGGACGTGCCGTGAACACGCGTGGGAGGTGACTCTCTCCGGAGTTA
GTTGGACCAAATGGGACATCATCCATCTTCTTTCAACAAGGCCAACTTTA
AGCGTGGGATCCGAGGATATCGCCAAATGTTTGCATCGCTGGACCTGGAG
CAAAAAGAGCTAAAGAAGCTCTGGATCGAGTTCGGAAAGATCGATACCGA
CAACGGCGGGACGGTGCGTATTCATTTGCGCCGGAAAAAAAAGGCAGAAA
GTATTCTGCGTGTGTGTAAACAGTCCGTCCGGTGGAGATGGGATGGTGCG
GTGCCACACGTGCTGTGGATTCTCTCGTGAACCCCGTGATTTGATATCGA
TACATACGCCGACATCAAATATAGTAGCTCGTAGTTGATCAAGGACATGT
CGTTCGTGCTCGGAGTGCATCTACTTCCTCTCTGTGCCAAGAGGTAGCAG
CATCGCCTGCAGTGCTCGTAACCTGCATGGCTTAGACAACACTCCGCGTG
ACACATCTCCGAGCTGTTTGCACCGCATGCACAAAGGAAAGGGGACGCAC
AACATGCACGTGGGTACGGCGAGAATCTACGTACACTAGCAAGCCCCGGG
GAACTTATTTTGCTTAAGCCATGTACTTCCGTATGGCCCTCATCCATTGT
ATTCTACATGTACCGATACAGCTTTGATGAACAGGCCGTGAGTTCCCGTT
GGCAACTCTGAAGCGCATTTTTCACACGCTCGATCTCAAACTGATGCCTG
TTTCCAAGAGAGCATAATGTTCATATATCTTCGGCACGGAGTTTTATCAC
AAATACCAACGACTGTCGAACACACCCTCGTATATACACGCCTTCACCAG
GTGAGCATACGAGAGCTGCTCTCTCATTGCGACCTCGACTTCACGCCCTT
CGGATACCGCCTCTTCGGGTGAGATTCATTCATCTTCATAGTTCCCACAA
CACTCAACCCAGTATGTTGAAGAACAATGTAATGTACAGGTTGGGCTATG
TATCAAGTTCTCGCCTCATCATCGACTGGGTGTGGCAAAGAGTGATCCTG
ACGGGTCTCTACTCTTCCCGAGTAGGGTCGGCATCTCCGCTAGTGTTGGA
AATACTGAATAGCGTATTGTGTTCATATTCCGCGCAGAATTTCTCTTTCC
CGGGTGACCCCGGCGTCACTCTCTCGCCAAAGGAATATGCAACAGTTTTT
TCTCTAGCCACGATGCATTTCAGTTCCATCCTCACATGCATATTCGGTGA
TAAATAACCTTTCTCGATCATCACTCCTCAGCAGACACAACGCATATCGT
ACATGAGCGGTCAGATACATGTTTTTTTTTTCTTGACGACCCCTCGCTTG
TCCTCCTTCCCATGCGCTCGTGCGACGTAATGAATCATGCCATGCAACAG
TATATTCGATGTGGACAATTCCGGGGCCGTGGACTTCCGAGAATTCGTGG
TCTCGACATGGAACTGCTGCACCATGGTACGCACAAAACTGTACGACTCC
TTCCAACCCCTCCCCCGGTTGCGACATGCAGGGGTATTCCCTCAAGTACG
GTCGACCATGGAAGAACGTTGCTCGCTGCCGCATGTGGGGCCAAACACTG
CAAACGTGTATTTATGTCGAATGTGTCGGCGGCGGGTGCACCATGCACAC
ACGTCTTCTAGAGATCTCACCCCTTCATGGCAGATGCAAGCTTTGTGACA
TTTACTAGACAATCCTGTTCCCCCCTTCCGTTCGCCCCCATTGTTGCAGA
ACCACGAGTCTCTTGTGCGCTTCGCTTTCGACCTCTTCGACCGAGACCAC
AGCGGTGCAATCGAGGTGCGTGGCAGTGGATGCCAAGTGGTTTGAGTGCC
TAAGCAGGCATACGATCCCCATCAAATTGGGTGGCGGATAGTATCAAGTG
GATACGTGCTTCAACAGGATCGATTGCGATCCCCACCCAGGATCTCCGTT
GGATCATCGAAGCTGCTGCTCGTGGTAGATCTCATAATTGGTGATTCGTG
CGCAATTCCCGTGGTGCAGACGGCCGAGATGGAGGCTATGCTCCGGGAAA
TCTACGGGGAACGTTTTACCGATAGCCCTGCCGCGGCCTTGACGTTGAAG
CGAGTTAAAGGTGAGCCGCGGGTTACGCCTGTCTTCGGACCGGGGTGTGA
GAAGCTTGGGGCCTGGGCGCATGAATCCACAGCCGTGGTTGCGTGTGGTG
TTGAAGATCTGTCAGCAGAGCACCATACGAGCGCGACACGTACGTTCCGA
GAAGATCGAGCGCCAAGCCCAGCTTAGGACCTGCCTCATTAACGCATCGA
CGGCGTTTGCAAGTGTAGCCAATAGTTCTGGCTGCAGAAGCATCGATCAC
GGTAGCCATCGTGCCGCTGAAAAGCGAATCTAAGTACCACCAATGACAAT
TTCCTCTCGTCCTCCCGTGCCCCTCTCTCTCGCCGCGTCCGCCACGTCAA
GAGCTCTCGTCGTCGAGCGACGCTGGACCAACCAACGGAACGACGATCCT
AGAATTGGCCGAGAAGGGAGTTCAGGTGGGCCCTGACGGTCGGATCTACG
CCCTCTCCTTCGAGGCGTTCAGGTACACGTTGCTGTTCCGAGTGGTCGGT
CTTGTTACCGTGATTGCACCTGCAATGGAAGTCTGTTTCCAACTATCTTA
CAAAGCAACACGTCCGACCTGTATGATGACTGAAAAACAATAGTGCAATA
TGTGTACGTCAAACGTTCAGCGACATGAGACGCGAATTGTTTTTGGTGGC
ACCGCGCTGACGCCCGCTGTGCCCGTCCTCCAATACCCCGTCCTGCTTGC
CACTATCCCTGCCCTTGCCTGCTGTTCTCGGTGTCGCGCCGAAGGGAATT
TTGCCGTCAGCATGCTGGGATGCTATTTCCAGCCTTCACCCTGCAGAAGC
GTGTACGGTCTAAGATCGTGTCGGGAGCGTTCTGGAAGGTGAAGGTGCTC
GCGAATCGATCCTTGTCTGTATGCAAGCCGGATGAAACGTAGACTTCTCG
GTACAGTACTCGAACTTCAGACCTACGGTAGTTGTGTGTGGTGTCTAATC
CTCCCACACCTCCGTCCTGATATTCTGTTGAAAAGGGGTGCGCTGATAGG
AGGAACGGAGTGCGACCAGGTCGAAATAAGGGCAAGGGGGGAAAACGCTC
GCCGCGAAAAGCCATCCAGCTCGAGCACCTGTCTACAATGATGAGGTTGG
ACGAGAAGAGCGCGACAGGCACCACCACCAATAACACCCCGGCCCCGAAC
GGTGTGGCGACGGGCACGGCCAGCACAACAGCCCCGGGGAATGGCTGCGC
GCAAACTCCGACAAACGCGTTACCCTCCCCTTCCCCCGCCCCGGGCGACG
CGATGAAACGTCCGTCGGAGACGAGGAAGCGGGGCAGCGGCGGAAATGAT
GATTCCAACGACTCCTCAGGCTCGTCATCGAAAAAGCCTGCGACGACGGC
AAAAATAGATGATGCGGTGGGGTACGATACCCGGGATGGGTCTGGGGAGG
AGGGACGACAGGCTCGGCGTGGAGGGGACGGGGGGCACGAAAAGGGGACA
GGGGACGGGGGCACGCCGAGGAAAAGGAGGTCGGGCTCTAGGGGAGTCGT
GGCTGTGGAAGGAGATGAGGGCGGCAGGGGAGCAAGCGAGAACAAAACCC
CTAGGTTTTCAATGCAGGTGACGTGCTGCAGACTTCTCCTTTTTTTCCCT
AGTCGGTGGCGTAACATATTTGTGACCCCTACGTAGTTGAGGTTGCTCAC
GGAAACGAGGGAGCCAAAGAACACTGTTCACTCTGCGTTAGGTGGGACAT
TTTTAGTGCCGAGAGCGATATACCCTGTAGTTTCTTCGCCCCGTCCCAAT
ACGGTACACCAGCAAGCGCGGTGGACGGGTATACAACGTCTGATGTAGCC
TTTCCGGGCGATTTTGCCCTCTACCATTACGATTTCGCAACCTACGCGTG
TTTCCTTCCTTGGCTCCCTGTAACTCCGGTCGGCGTGGTACAATACTGCA
ACACTGACTAGCCCTTCTCCGCGCCCGCAAAGCGGTCTTGAGTTGCCCCC
CGAGGCGCCAGGCACCAAAAAAAGCAACAGTCCCCCCCCCTACAACTGTA
GTGCACCCATCCCGGAAAGAGATGCCAGCGGCGAAGTGAGATGATAGAAA
GCACCGGCTTGTGTCCTTGAAATTCACCACCACCGTAGATATCATCACAA
ACCTATCCTAACGTTTGCGCTCGATGTTCGGAAAAAGACCAAAAAGTATG
CAATCCTGCTGTGAGACCATGGCGCCACTTATTTTCGTACTTTCTTGAAA
ACCGTCAAGGGTAGCGTGTTTATTGTGGAGGTTTGCAATCTAGAGGTGTT
TTCCTTCGGCGCCTGTGGATTTCGTCGAACCTCTGCGACAAGCGGTGCTG
TCATAGTCTCCAAAATGAAGTTCGTAGCCTCCGTGGCTCGAGAGTGTCGA
CAGCCAGGCATTGGAGTCGCCAGGATCAACGACGGGTGTTCAGAGAGACT
TCACCTCGTCCCCAACACGACATGCCCAGGAAGATAGATCGCGATACTGT
CAGGAGGCGGTGCTCGAGCTACCGTGCTTGAACCATTCCCACGACCCACG
AGATTCCTGCAACGCATGCAGGCAGTTTTTCTCGTTTACTGCCATCATGT
ACTCATACATGAGCATTGACCAAGGTCCCCGCCGCCGACTGTCTCATGGC
ACCACAGGCGCCGCGAGCCTCCAGGGAGGGGACCAACACCCATCGGGTGA
CCCCTAGTCACGCAGGAGGCGCTTCGCAACCAGCAACTTTGAGACAAGGA
ACGCCAACTAACGGCCCACCGACAGGAGCGTCTGCAACGGACAACGTAGC
GACAACACCACAGCCCCGGCAAACCTACCCTTTGCCTATTGACGCGGGGG
GGCGCGGCACCAGCGCGTGGGCGCGCGGGGGTGGCGAGGGGACTCGGATC
AGTGGGGGCGGCGTGCCGCCTGGTTTTGCGGGGGGCGTGAGTGAAGAGGA
GAGCGCACCATGCAGACGGCGGAAGAAAGAATCGCGCGTGGATTCTCCGT
TGGCCGCCGCGGCGCGAGCGGCGGCGGTGTACGAGCTTCCCGCTCTCAGA
GAGACAGCCGCCACGAAGCGAAGAAGTCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10069:368..5647+

>mRNA_Ecto-sp13_S_contig10069.92.1 ID=mRNA_Ecto-sp13_S_contig10069.92.1|Name=mRNA_Ecto-sp13_S_contig10069.92.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1674bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10069:368..5647+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGACATCATCCATCTTCTTTCAACAAGGCCAACTTTAAGCGTGGGAT
CCGAGGATATCGCCAAATGTTTGCATCGCTGGACCTGGAGCAAAAAGAGC
TAAAGAAGCTCTGGATCGAGTTCGGAAAGATCGATACCGACAACGGCGGG
ACGGTGAGCATACGAGAGCTGCTCTCTCATTGCGACCTCGACTTCACGCC
CTTCGGATACCGCCTCTTCGGTATATTCGATGTGGACAATTCCGGGGCCG
TGGACTTCCGAGAATTCGTGGTCTCGACATGGAACTGCTGCACCATGAAC
CACGAGTCTCTTGTGCGCTTCGCTTTCGACCTCTTCGACCGAGACCACAG
CGGTGCAATCGAGACGGCCGAGATGGAGGCTATGCTCCGGGAAATCTACG
GGGAACGTTTTACCGATAGCCCTGCCGCGGCCTTGACGTTGAAGCGAGTT
AAAGAGCTCTCGTCGTCGAGCGACGCTGGACCAACCAACGGAACGACGAT
CCTAGAATTGGCCGAGAAGGGAGTTCAGGTGGGCCCTGACGGTCGGATCT
ACGCCCTCTCCTTCGAGGCGTTCAGGGAATTTTGCCGTCAGCATGCTGGG
ATGCTATTTCCAGCCTTCACCCTGCAGAAGCGTGTACGGTCTAAGATCGT
GTCGGGAGCGTTCTGGAAGGGGTGCGCTGATAGGAGGAACGGAGTGCGAC
CAGGTCGAAATAAGGGCAAGGGGGGAAAACGCTCGCCGCGAAAAGCCATC
CAGCTCGAGCACCTGTCTACAATGATGAGGTTGGACGAGAAGAGCGCGAC
AGGCACCACCACCAATAACACCCCGGCCCCGAACGGTGTGGCGACGGGCA
CGGCCAGCACAACAGCCCCGGGGAATGGCTGCGCGCAAACTCCGACAAAC
GCGTTACCCTCCCCTTCCCCCGCCCCGGGCGACGCGATGAAACGTCCGTC
GGAGACGAGGAAGCGGGGCAGCGGCGGAAATGATGATTCCAACGACTCCT
CAGGCTCGTCATCGAAAAAGCCTGCGACGACGGCAAAAATAGATGATGCG
GTGGGGTACGATACCCGGGATGGGTCTGGGGAGGAGGGACGACAGGCTCG
GCGTGGAGGGGACGGGGGGCACGAAAAGGGGACAGGGGACGGGGGCACGC
CGAGGAAAAGGAGGTCGGGCTCTAGGGGAGTCGTGGCTGTGGAAGGAGAT
GAGGGCGGCAGGGGAGCAAGCGAGAACAAAACCCCTAGGTTTTCAATGCA
GGCGCCGCGAGCCTCCAGGGAGGGGACCAACACCCATCGGGTGACCCCTA
GTCACGCAGGAGGCGCTTCGCAACCAGCAACTTTGAGACAAGGAACGCCA
ACTAACGGCCCACCGACAGGAGCGTCTGCAACGGACAACGTAGCGACAAC
ACCACAGCCCCGGCAAACCTACCCTTTGCCTATTGACGCGGGGGGGCGCG
GCACCAGCGCGTGGGCGCGCGGGGGTGGCGAGGGGACTCGGATCAGTGGG
GGCGGCGTGCCGCCTGGTTTTGCGGGGGGCGTGAGTGAAGAGGAGAGCGC
ACCATGCAGACGGCGGAAGAAAGAATCGCGCGTGGATTCTCCGTTGGCCG
CCGCGGCGCGAGCGGCGGCGGTGTACGAGCTTCCCGCTCTCAGAGAGACA
GCCGCCACGAAGCGAAGAAGTCAC
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