|
|
Homology
BLAST of mRNA_Ecto-sp13_S_contig11026.910.1 vs. uniprot
Match: A0A6H5KHP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP2_9PHAE) HSP 1 Score: 601 bits (1550), Expect = 4.010e-204 Identity = 436/629 (69.32%), Postives = 447/629 (71.07%), Query Frame = 1
Query: 1 MTKGRRVLVAAAFATTATWPSSTPGRSASSAWGFLAAAPRSANCLAANKRSDSCRSRLCGSWSAADAAASTRQQSKGMVYTEQCLHAIAAFKESGAYPSLDARRERGGEASFFASRLCSSSSSSSRARLLPLPSRAAGGDGRDGGLGGIGLDAESVARAREAAKKDDYDWFMEFIGVDEEAEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTRRAPTSTSGRYSSTGSEYDNGFVNDIAGGPPPRRGRPPAPGRGFQPRSGGVGASGGMRRERRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQHSMEAEQE--QVFAGRAVEFEPVGSKKAKALTEGLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPPXXXXXXXXXXXXXXXXXXYFGGGATAAAEDIGRTSRGSGDRRGVVDDGSLDLDAILGDGYDDNXXXXXXXXXXXXNRSRSTADGWRDQERRKGDXYYYDDGEGAPQIGRRGMYDREEDFVPRGRDEARGRGRREIDGGLGGPRGQSRRPRRKKKAKISPAERYERQIFGEMGGNDSKSAGNRRPLWDEDDEEDRGKLWTGVGPDGPWPT 1881
MT+GR VL+AAA ATTATWPSSTPGRS SSAWGFLAAAPRSANCL ANK S+SS+SSRARLL LPSRA GG GLDAESVARAREAAKKDDYDWFMEFIGVDEE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GRGFQP SGGVG +G MRRERR S ADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAK KSASMRRPLEDDQ SMEAEQE Q FAGRA EFEPVGSKKAKALTE LGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPPXXXXXXXXXXXXXXXXXXYFGGGAT AAED+GRTSRGS DR GVVDDGSLDLDAILGDGYD N XXXXXXXXXXX X EGAPQ+GRRGM DREEDFV RGRDE RGRGRRE+DGG+GGPRGQSRRPRRKKK ISPAERYERQIFGE+GG D K AGNRRPLWDE+DEED GKLWTGVGPDGPWPT
Sbjct: 1 MTRGRGVLLAAAVATTATWPSSTPGRSTSSAWGFLAAAPRSANCLDANK---------------------------------------------------------------------STSSTSSRARLLLLPSRATGGXXXXXXXXXXGLDAESVARAREAAKKDDYDWFMEFIGVDEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXGRGFQPLSGGVGTTGEMRRERRPSPADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKAKSASMRRPLEDDQQSMEAEQEIRQEFAGRAAEFEPVGSKKAKALTEDLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPPXXXXXXXXXXXXXXXXXXYFGGGATTAAEDVGRTSRGSSDRGGVVDDGSLDLDAILGDGYDYNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EGAPQMGRRGMDDREEDFVLRGRDEGRGRGRREMDGGVGGPRGQSRRPRRKKK-NISPAERYERQIFGELGGEDGKGAGNRRPLWDENDEEDGGKLWTGVGPDGPWPT 551
BLAST of mRNA_Ecto-sp13_S_contig11026.910.1 vs. uniprot
Match: D7G0C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C6_ECTSI) HSP 1 Score: 474 bits (1219), Expect = 6.930e-159 Identity = 279/353 (79.04%), Postives = 288/353 (81.59%), Query Frame = 1
Query: 823 MRRERRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQHSMEAEQEQVFAGRAVEFEPVGSKKAKALTEGLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPPXXXXXXXXXXXXXXXXXXYFGGGATAAAEDIGRTSRGSGDRRGVVDDGSLDLDAILGDGYDDNXXXXXXXXXXXXNRSRSTADGWRDQERRKGDXYYYDDGEGAPQIGRRGMYDREEDFVPRGRDEARGRGRREIDGGLGGPRGQSRRPRRKKKAKISPAERYERQIFGEMGGNDSKSAGNRRPLWDEDDEEDRGKLWTGVGPDGPWPT 1881
MRRERRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQ SMEAEQEQ FAGRAVEFEPVGSKKAKAL E LGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMP XXXXXXXXXXXXXXXXXX AED+ RTSRGSGDR GVVDDGSLDLDAILGDGYD N XX X AP +GR GMYDREED PRGRDE RGRGRRE+DGG+GGPRGQS+RPRRK++ +ISPAERYERQIFGE+GG D K AGNRR LWDEDDEED GKLWTGVGPDGPWPT
Sbjct: 1 MRRERRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQQSMEAEQEQEFAGRAVEFEPVGSKKAKALIEDLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDVVRTSRGSGDRGGVVDDGSLDLDAILGDGYDYNGVGGRRRKGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPHLGRGGMYDREEDLFPRGRDEGRGRGRREMDGGVGGPRGQSKRPRRKERTEISPAERYERQIFGELGGEDGKGAGNRRALWDEDDEEDEGKLWTGVGPDGPWPT 353
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 481.5 |
| Seed ortholog evalue | 6e-133 |
| Seed eggNOG ortholog | 2880.D7G0C6 |
| Model size | 1884 |
| Hectar predicted targeting category | chloroplast |
| Exons | 4 |
| EggNOG OGs | 2EAU4@1,2SH0U@2759 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-02_000960.1 |
| Cds size | 1884 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462571.548324-CDS-Ecto-sp13_S_contig11026:328..788 | 1681462571.548324-CDS-Ecto-sp13_S_contig11026:328..788 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11026 329..788 - |
| 1681462571.5597272-CDS-Ecto-sp13_S_contig11026:1211..1528 | 1681462571.5597272-CDS-Ecto-sp13_S_contig11026:1211..1528 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11026 1212..1528 - |
| 1681462571.5677137-CDS-Ecto-sp13_S_contig11026:2105..2234 | 1681462571.5677137-CDS-Ecto-sp13_S_contig11026:2105..2234 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11026 2106..2234 - |
| 1681462571.575969-CDS-Ecto-sp13_S_contig11026:2406..3384 | 1681462571.575969-CDS-Ecto-sp13_S_contig11026:2406..3384 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11026 2407..3384 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11026.910.1 >prot_Ecto-sp13_S_contig11026.910.1 ID=prot_Ecto-sp13_S_contig11026.910.1|Name=mRNA_Ecto-sp13_S_contig11026.910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=628bp
MTKGRRVLVAAAFATTATWPSSTPGRSASSAWGFLAAAPRSANCLAANKR SDSCRSRLCGSWSAADAAASTRQQSKGMVYTEQCLHAIAAFKESGAYPSL DARRERGGEASFFASRLCSSSSSSSRARLLPLPSRAAGGDGRDGGLGGIG LDAESVARAREAAKKDDYDWFMEFIGVDEEAEDGGSKSGGEDNSSGKASD RSSSNNGGGVVGGASSGTRRAPTSTSGRYSSTGSEYDNGFVNDIAGGPPP RRGRPPAPGRGFQPRSGGVGASGGMRRERRTSSADTAYDYDLDEEYDQEP GRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQHSMEAE QEQVFAGRAVEFEPVGSKKAKALTEGLGYTEAEVACIDPDMADLAIERAI RRPASGMPRDWVAVGMPPPPPPIPTSTASAPSSSQTYFGGGATAAAEDIG RTSRGSGDRRGVVDDGSLDLDAILGDGYDDNGGGGRRRKGTRRNRSRSTA DGWRDQERRKGDDYYYDDGEGAPQIGRRGMYDREEDFVPRGRDEARGRGR REIDGGLGGPRGQSRRPRRKKKAKISPAERYERQIFGEMGGNDSKSAGNR RPLWDEDDEEDRGKLWTGVGPDGPWPT* back to topmRNA from alignment at Ecto-sp13_S_contig11026:329..3384- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig11026.910.1 ID=mRNA_Ecto-sp13_S_contig11026.910.1|Name=mRNA_Ecto-sp13_S_contig11026.910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11026:329..3384- (Ectocarpus species13 EcNAP12_S_4_19m) ATGACGAAAGGTCGTAGGGTTCTGGTTGCAGCCGCCTTCGCCACAACAGC
AACGTGGCCTTCATCGACCCCTGGCCGTAGCGCTAGCAGTGCTTGGGGAT
TCCTAGCAGCTGCACCGCGATCCGCCAACTGTCTGGCTGCGAACAAGAGG
TCGGACTCTTGCCGCTCTCGCCTGTGCGGATCATGGTCTGCTGCAGACGC
AGCAGCTTCCACACGTCAACAGAGCAAGGGTATGGTGTATACCGAGCAAT
GCTTGCATGCGATTGCTGCTTTCAAAGAGAGCGGTGCGTATCCAAGCTTG
GATGCAAGACGAGAAAGAGGAGGCGAAGCCTCGTTTTTTGCGTCTCGGTT
GTGTAGCAGTAGCAGCAGCAGCAGCCGAGCCAGGCTGCTGCCGTTACCAA
GCAGAGCGGCAGGTGGAGATGGAAGAGACGGTGGGCTGGGAGGGATAGGC
CTTGATGCCGAGAGCGTGGCGCGAGCTCGCGAGGCGGCAAAGAAGGATGA
CTACGACTGGTTCATGGAATTTATCGGGGTCGACGAGGAAGCGGAGGACG
GCGGCAGTAAAAGTGGCGGTGAGGACAACAGCAGCGGGAAAGCAAGTGAC
CGCTCTAGTAGCAACAACGGCGGCGGGGTTGTAGGCGGAGCAAGCAGCGG
CACACGACGAGCTCCAACCAGTACCAGCGGGCGGTACAGCAGTACCGGCA
GCGAATATGACAACGGTTTCGTTAACGATATCGCTGGTGGCCCGCCCCCT
CGTCGGGGTCGCCCCCCGGCACCAGGACGAGGTTTCCAACCCCGCTCAGG
CGGCGTTGGCGCATCAGGGGGGATGAGGCGAGAAAGACGAACCTCGTCTG
CGGATACTGCCTACGACTACGATTTGGACGAAGAGTACGACCAGGAACCA
GGGAGGGGGGGGTGGGACTACGACCCCGGGCTTTCGGCGGGGATTGGAGC
ACGCCGGCGAGATGTGCAAGTCGACAAGGTGCGTAGTTGGAGAATCGAGC
GATTAGCCTGAAAACAGTGGTTTGGGTTGGGCAAGTAGAGAGAGTGTTGT
GCAGTTGTTCGGTCAGCAGCGGAAAGATCATGAGAAGATGACCGACCTCG
GAGGATAATTTTCTTTAGATGTGTCACACAAATTTCCGACGCCTACCTAG
GTCCGCGCGAAGACCAAGTCTGCCTCGATGAGGCGGCCGCTAGAGGACGA
CCAACATTCGATGGAGGCAGAGCAGGAGCAGGTTTTTGCCGGAAGAGCGG
TTGAATTTGAGCCCGTCGGCTCTAAAAAGGTGACGTTGTTTTCATGTTTT
TACTCAGCAAGGAGACAGTGGAGAATAGTTCTGCACACATCTCAGTTGAG
CGTCCGCATTGGATGGGTTTCGAGAACAGTGGAATGGAGCAGAGATCGAA
ATGTACTGTCGTTCGGAAACAGTCCTAATGGAACACAATATCTTCGGTCG
TTGCCTCGTGTTAGCCTTCACATGGGGCGTGTTGCTTTGTGCGTGAGTCT
CCCTCTATGCGTTGCGTCGGGCCACCGTTTGCGCCGTTCGCCTGCTTCGG
TCAGCCGTGTGTGCGCCACTTCGCTCAGCAATCTCGAGACAACGGTAGAG
GCGCCACACGGGGAGAACAGGTTTACACGCAGGTGCATTGCCTGGCACAT
CATCAGCTACTCGCTGTGTGGTTTTTGCGGCTCTCGTGTTGTTCGACGCG
CACATATGGAGCTAATCAATAGCGTCACTCAACACACGAAAACGTTTTTT
CACATCCCGGCAGCACTGCACCGCACCTCAACACAAATCCTTTCCAATCA
TTTGGTGTCTCAAACACGCCTTTGGCCCATTCCGCGCAATCGTTTGTGTA
TCCCAGGCGAAGGCGTTAACAGAAGGTCTTGGCTACACGGAGGCTGAGGT
GGCCTGCATTGACCCGGACATGGCAGACCTAGCCATCGAGCGCGCCATCC
GCAGGCCGGCCTCCGGCATGCCGCGAGACTGGGTTGCCGTCGGTATGCCA
CCGCCGCCGCCCCCGATCCCCACCTCCACCGCCTCAGCTCCCTCCTCTTC
TCAAACCTACTTCGGTGGAGGCGCTACCGCTGCCGCTGAGGATATTGGCA
GGACCAGCAGGGGAAGCGGCGACCGCCGTGGTGTCGTCGACGATGGTTCA
CTCGATCTCGACGCGATCCTGGGGTGAGTTGTTTGTCTCTTTTTTGTTGT
GGTAAGAACTGGCGAACTTGCGTCAGCAGCGACTTTCTTCCAACACGTCT
CGGTCGACTGGTTGTTTCGTGTCCTTGCTCAGCTAGATGTGGAGGTACTG
AAAGCTCCAAGTCTGCTGTCACCTGCATGTACGACGTAGAATCCGGCAAG
CAGAACGTCAGCCGCCAGGGCGACCAGGGAAGGAAAGAATCAAAACGCTG
TTTCGACGCTTGTTCTTCGTATTCCTCATCGTTTCCCCTGTCACGGAGCG
GACATATGTTCCAAACAACCAGAGTGAACATTGTACTCGGTAGAATCTGG
TTCCTGAGTGTACAAGAGAGGTCTCATTCTCATACATACGCGGTAGCACT
GAAATGGATGGATCGAAACGTGTCTTTTTGGTGCTTTTTCAAGCAGCGAT
GGCTATGACGACAACGGGGGCGGCGGGAGGAGACGGAAGGGAACACGCCG
CAACCGTTCCCGCAGCACCGCGGACGGTTGGAGAGACCAAGAAAGGAGGA
AGGGAGACGACTATTATTATGATGACGGTGAGGGGGCTCCGCAAATAGGA
AGGAGGGGTATGTACGATCGGGAGGAGGATTTCGTTCCCCGCGGCCGGGA
CGAAGCTAGAGGGAGGGGGCGCCGCGAAATCGACGGCGGTCTGGGTGGTC
CTAGGGGGCAGAGCAGGAGACCGCGGAGGAAGAAGAAAGCCAAGATTAGC
CCAGCGGAGCGGTACGAGAGGCAAATTTTTGGAGAAATGGGGGGTAACGA
CAGCAAGAGTGCTGGTAACAGGCGGCCCCTCTGGGATGAAGACGATGAAG
AAGATCGAGGGAAGCTTTGGACGGGGGTTGGCCCTGACGGACCTTGGCCG
ACGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig11026:329..3384- >mRNA_Ecto-sp13_S_contig11026.910.1 ID=mRNA_Ecto-sp13_S_contig11026.910.1|Name=mRNA_Ecto-sp13_S_contig11026.910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1884bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11026:329..3384- (Ectocarpus species13 EcNAP12_S_4_19m) ATGACGAAAGGTCGTAGGGTTCTGGTTGCAGCCGCCTTCGCCACAACAGC AACGTGGCCTTCATCGACCCCTGGCCGTAGCGCTAGCAGTGCTTGGGGAT TCCTAGCAGCTGCACCGCGATCCGCCAACTGTCTGGCTGCGAACAAGAGG TCGGACTCTTGCCGCTCTCGCCTGTGCGGATCATGGTCTGCTGCAGACGC AGCAGCTTCCACACGTCAACAGAGCAAGGGTATGGTGTATACCGAGCAAT GCTTGCATGCGATTGCTGCTTTCAAAGAGAGCGGTGCGTATCCAAGCTTG GATGCAAGACGAGAAAGAGGAGGCGAAGCCTCGTTTTTTGCGTCTCGGTT GTGTAGCAGTAGCAGCAGCAGCAGCCGAGCCAGGCTGCTGCCGTTACCAA GCAGAGCGGCAGGTGGAGATGGAAGAGACGGTGGGCTGGGAGGGATAGGC CTTGATGCCGAGAGCGTGGCGCGAGCTCGCGAGGCGGCAAAGAAGGATGA CTACGACTGGTTCATGGAATTTATCGGGGTCGACGAGGAAGCGGAGGACG GCGGCAGTAAAAGTGGCGGTGAGGACAACAGCAGCGGGAAAGCAAGTGAC CGCTCTAGTAGCAACAACGGCGGCGGGGTTGTAGGCGGAGCAAGCAGCGG CACACGACGAGCTCCAACCAGTACCAGCGGGCGGTACAGCAGTACCGGCA GCGAATATGACAACGGTTTCGTTAACGATATCGCTGGTGGCCCGCCCCCT CGTCGGGGTCGCCCCCCGGCACCAGGACGAGGTTTCCAACCCCGCTCAGG CGGCGTTGGCGCATCAGGGGGGATGAGGCGAGAAAGACGAACCTCGTCTG CGGATACTGCCTACGACTACGATTTGGACGAAGAGTACGACCAGGAACCA GGGAGGGGGGGGTGGGACTACGACCCCGGGCTTTCGGCGGGGATTGGAGC ACGCCGGCGAGATGTGCAAGTCGACAAGGTCCGCGCGAAGACCAAGTCTG CCTCGATGAGGCGGCCGCTAGAGGACGACCAACATTCGATGGAGGCAGAG CAGGAGCAGGTTTTTGCCGGAAGAGCGGTTGAATTTGAGCCCGTCGGCTC TAAAAAGGCGAAGGCGTTAACAGAAGGTCTTGGCTACACGGAGGCTGAGG TGGCCTGCATTGACCCGGACATGGCAGACCTAGCCATCGAGCGCGCCATC CGCAGGCCGGCCTCCGGCATGCCGCGAGACTGGGTTGCCGTCGGTATGCC ACCGCCGCCGCCCCCGATCCCCACCTCCACCGCCTCAGCTCCCTCCTCTT CTCAAACCTACTTCGGTGGAGGCGCTACCGCTGCCGCTGAGGATATTGGC AGGACCAGCAGGGGAAGCGGCGACCGCCGTGGTGTCGTCGACGATGGTTC ACTCGATCTCGACGCGATCCTGGGCGATGGCTATGACGACAACGGGGGCG GCGGGAGGAGACGGAAGGGAACACGCCGCAACCGTTCCCGCAGCACCGCG GACGGTTGGAGAGACCAAGAAAGGAGGAAGGGAGACGACTATTATTATGA TGACGGTGAGGGGGCTCCGCAAATAGGAAGGAGGGGTATGTACGATCGGG AGGAGGATTTCGTTCCCCGCGGCCGGGACGAAGCTAGAGGGAGGGGGCGC CGCGAAATCGACGGCGGTCTGGGTGGTCCTAGGGGGCAGAGCAGGAGACC GCGGAGGAAGAAGAAAGCCAAGATTAGCCCAGCGGAGCGGTACGAGAGGC AAATTTTTGGAGAAATGGGGGGTAACGACAGCAAGAGTGCTGGTAACAGG CGGCCCCTCTGGGATGAAGACGATGAAGAAGATCGAGGGAAGCTTTGGAC GGGGGTTGGCCCTGACGGACCTTGGCCGACGTGA back to top
|