mRNA_Ecto-sp13_S_contig11026.910.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11026.910.1
Unique NamemRNA_Ecto-sp13_S_contig11026.910.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11026.910.1 vs. uniprot
Match: A0A6H5KHP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP2_9PHAE)

HSP 1 Score: 601 bits (1550), Expect = 4.010e-204
Identity = 436/629 (69.32%), Postives = 447/629 (71.07%), Query Frame = 1
Query:    1 MTKGRRVLVAAAFATTATWPSSTPGRSASSAWGFLAAAPRSANCLAANKRSDSCRSRLCGSWSAADAAASTRQQSKGMVYTEQCLHAIAAFKESGAYPSLDARRERGGEASFFASRLCSSSSSSSRARLLPLPSRAAGGDGRDGGLGGIGLDAESVARAREAAKKDDYDWFMEFIGVDEEAEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTRRAPTSTSGRYSSTGSEYDNGFVNDIAGGPPPRRGRPPAPGRGFQPRSGGVGASGGMRRERRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQHSMEAEQE--QVFAGRAVEFEPVGSKKAKALTEGLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPPXXXXXXXXXXXXXXXXXXYFGGGATAAAEDIGRTSRGSGDRRGVVDDGSLDLDAILGDGYDDNXXXXXXXXXXXXNRSRSTADGWRDQERRKGDXYYYDDGEGAPQIGRRGMYDREEDFVPRGRDEARGRGRREIDGGLGGPRGQSRRPRRKKKAKISPAERYERQIFGEMGGNDSKSAGNRRPLWDEDDEEDRGKLWTGVGPDGPWPT 1881
            MT+GR VL+AAA ATTATWPSSTPGRS SSAWGFLAAAPRSANCL ANK                                                                     S+SS+SSRARLL LPSRA GG          GLDAESVARAREAAKKDDYDWFMEFIGVDEE    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                          GRGFQP SGGVG +G MRRERR S ADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAK KSASMRRPLEDDQ SMEAEQE  Q FAGRA EFEPVGSKKAKALTE LGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPPXXXXXXXXXXXXXXXXXXYFGGGAT AAED+GRTSRGS DR GVVDDGSLDLDAILGDGYD N XXXXXXXXXXX                   X      EGAPQ+GRRGM DREEDFV RGRDE RGRGRRE+DGG+GGPRGQSRRPRRKKK  ISPAERYERQIFGE+GG D K AGNRRPLWDE+DEED GKLWTGVGPDGPWPT
Sbjct:    1 MTRGRGVLLAAAVATTATWPSSTPGRSTSSAWGFLAAAPRSANCLDANK---------------------------------------------------------------------STSSTSSRARLLLLPSRATGGXXXXXXXXXXGLDAESVARAREAAKKDDYDWFMEFIGVDEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXGRGFQPLSGGVGTTGEMRRERRPSPADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKAKSASMRRPLEDDQQSMEAEQEIRQEFAGRAAEFEPVGSKKAKALTEDLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPPXXXXXXXXXXXXXXXXXXYFGGGATTAAEDVGRTSRGSSDRGGVVDDGSLDLDAILGDGYDYNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EGAPQMGRRGMDDREEDFVLRGRDEGRGRGRREMDGGVGGPRGQSRRPRRKKK-NISPAERYERQIFGELGGEDGKGAGNRRPLWDENDEEDGGKLWTGVGPDGPWPT 551          
BLAST of mRNA_Ecto-sp13_S_contig11026.910.1 vs. uniprot
Match: D7G0C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C6_ECTSI)

HSP 1 Score: 474 bits (1219), Expect = 6.930e-159
Identity = 279/353 (79.04%), Postives = 288/353 (81.59%), Query Frame = 1
Query:  823 MRRERRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQHSMEAEQEQVFAGRAVEFEPVGSKKAKALTEGLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPPXXXXXXXXXXXXXXXXXXYFGGGATAAAEDIGRTSRGSGDRRGVVDDGSLDLDAILGDGYDDNXXXXXXXXXXXXNRSRSTADGWRDQERRKGDXYYYDDGEGAPQIGRRGMYDREEDFVPRGRDEARGRGRREIDGGLGGPRGQSRRPRRKKKAKISPAERYERQIFGEMGGNDSKSAGNRRPLWDEDDEEDRGKLWTGVGPDGPWPT 1881
            MRRERRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQ SMEAEQEQ FAGRAVEFEPVGSKKAKAL E LGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMP XXXXXXXXXXXXXXXXXX         AED+ RTSRGSGDR GVVDDGSLDLDAILGDGYD N          XX                   X        AP +GR GMYDREED  PRGRDE RGRGRRE+DGG+GGPRGQS+RPRRK++ +ISPAERYERQIFGE+GG D K AGNRR LWDEDDEED GKLWTGVGPDGPWPT
Sbjct:    1 MRRERRTSSADTAYDYDLDEEYDQEPGRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQQSMEAEQEQEFAGRAVEFEPVGSKKAKALIEDLGYTEAEVACIDPDMADLAIERAIRRPASGMPRDWVAVGMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDVVRTSRGSGDRGGVVDDGSLDLDAILGDGYDYNGVGGRRRKGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPHLGRGGMYDREEDLFPRGRDEGRGRGRREMDGGVGGPRGQSKRPRRKERTEISPAERYERQIFGELGGEDGKGAGNRRALWDEDDEEDEGKLWTGVGPDGPWPT 353          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11026.910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHP2_9PHAE4.010e-20469.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0C6_ECTSI6.930e-15979.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11026contigEcto-sp13_S_contig11026:329..3384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score481.5
Seed ortholog evalue6e-133
Seed eggNOG ortholog2880.D7G0C6
Model size1884
Hectar predicted targeting categorychloroplast
Exons4
EggNOG OGs2EAU4@1,2SH0U@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000960.1
Cds size1884
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.548324-CDS-Ecto-sp13_S_contig11026:328..7881681462571.548324-CDS-Ecto-sp13_S_contig11026:328..788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11026 329..788 -
1681462571.5597272-CDS-Ecto-sp13_S_contig11026:1211..15281681462571.5597272-CDS-Ecto-sp13_S_contig11026:1211..1528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11026 1212..1528 -
1681462571.5677137-CDS-Ecto-sp13_S_contig11026:2105..22341681462571.5677137-CDS-Ecto-sp13_S_contig11026:2105..2234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11026 2106..2234 -
1681462571.575969-CDS-Ecto-sp13_S_contig11026:2406..33841681462571.575969-CDS-Ecto-sp13_S_contig11026:2406..3384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11026 2407..3384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11026.910.1prot_Ecto-sp13_S_contig11026.910.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11026 329..3384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11026.910.1

>prot_Ecto-sp13_S_contig11026.910.1 ID=prot_Ecto-sp13_S_contig11026.910.1|Name=mRNA_Ecto-sp13_S_contig11026.910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=628bp
MTKGRRVLVAAAFATTATWPSSTPGRSASSAWGFLAAAPRSANCLAANKR
SDSCRSRLCGSWSAADAAASTRQQSKGMVYTEQCLHAIAAFKESGAYPSL
DARRERGGEASFFASRLCSSSSSSSRARLLPLPSRAAGGDGRDGGLGGIG
LDAESVARAREAAKKDDYDWFMEFIGVDEEAEDGGSKSGGEDNSSGKASD
RSSSNNGGGVVGGASSGTRRAPTSTSGRYSSTGSEYDNGFVNDIAGGPPP
RRGRPPAPGRGFQPRSGGVGASGGMRRERRTSSADTAYDYDLDEEYDQEP
GRGGWDYDPGLSAGIGARRRDVQVDKVRAKTKSASMRRPLEDDQHSMEAE
QEQVFAGRAVEFEPVGSKKAKALTEGLGYTEAEVACIDPDMADLAIERAI
RRPASGMPRDWVAVGMPPPPPPIPTSTASAPSSSQTYFGGGATAAAEDIG
RTSRGSGDRRGVVDDGSLDLDAILGDGYDDNGGGGRRRKGTRRNRSRSTA
DGWRDQERRKGDDYYYDDGEGAPQIGRRGMYDREEDFVPRGRDEARGRGR
REIDGGLGGPRGQSRRPRRKKKAKISPAERYERQIFGEMGGNDSKSAGNR
RPLWDEDDEEDRGKLWTGVGPDGPWPT*
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mRNA from alignment at Ecto-sp13_S_contig11026:329..3384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11026.910.1 ID=mRNA_Ecto-sp13_S_contig11026.910.1|Name=mRNA_Ecto-sp13_S_contig11026.910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11026:329..3384- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAAAGGTCGTAGGGTTCTGGTTGCAGCCGCCTTCGCCACAACAGC AACGTGGCCTTCATCGACCCCTGGCCGTAGCGCTAGCAGTGCTTGGGGAT TCCTAGCAGCTGCACCGCGATCCGCCAACTGTCTGGCTGCGAACAAGAGG TCGGACTCTTGCCGCTCTCGCCTGTGCGGATCATGGTCTGCTGCAGACGC AGCAGCTTCCACACGTCAACAGAGCAAGGGTATGGTGTATACCGAGCAAT GCTTGCATGCGATTGCTGCTTTCAAAGAGAGCGGTGCGTATCCAAGCTTG GATGCAAGACGAGAAAGAGGAGGCGAAGCCTCGTTTTTTGCGTCTCGGTT GTGTAGCAGTAGCAGCAGCAGCAGCCGAGCCAGGCTGCTGCCGTTACCAA GCAGAGCGGCAGGTGGAGATGGAAGAGACGGTGGGCTGGGAGGGATAGGC CTTGATGCCGAGAGCGTGGCGCGAGCTCGCGAGGCGGCAAAGAAGGATGA CTACGACTGGTTCATGGAATTTATCGGGGTCGACGAGGAAGCGGAGGACG GCGGCAGTAAAAGTGGCGGTGAGGACAACAGCAGCGGGAAAGCAAGTGAC CGCTCTAGTAGCAACAACGGCGGCGGGGTTGTAGGCGGAGCAAGCAGCGG CACACGACGAGCTCCAACCAGTACCAGCGGGCGGTACAGCAGTACCGGCA GCGAATATGACAACGGTTTCGTTAACGATATCGCTGGTGGCCCGCCCCCT CGTCGGGGTCGCCCCCCGGCACCAGGACGAGGTTTCCAACCCCGCTCAGG CGGCGTTGGCGCATCAGGGGGGATGAGGCGAGAAAGACGAACCTCGTCTG CGGATACTGCCTACGACTACGATTTGGACGAAGAGTACGACCAGGAACCA GGGAGGGGGGGGTGGGACTACGACCCCGGGCTTTCGGCGGGGATTGGAGC ACGCCGGCGAGATGTGCAAGTCGACAAGGTGCGTAGTTGGAGAATCGAGC GATTAGCCTGAAAACAGTGGTTTGGGTTGGGCAAGTAGAGAGAGTGTTGT GCAGTTGTTCGGTCAGCAGCGGAAAGATCATGAGAAGATGACCGACCTCG GAGGATAATTTTCTTTAGATGTGTCACACAAATTTCCGACGCCTACCTAG GTCCGCGCGAAGACCAAGTCTGCCTCGATGAGGCGGCCGCTAGAGGACGA CCAACATTCGATGGAGGCAGAGCAGGAGCAGGTTTTTGCCGGAAGAGCGG TTGAATTTGAGCCCGTCGGCTCTAAAAAGGTGACGTTGTTTTCATGTTTT TACTCAGCAAGGAGACAGTGGAGAATAGTTCTGCACACATCTCAGTTGAG CGTCCGCATTGGATGGGTTTCGAGAACAGTGGAATGGAGCAGAGATCGAA ATGTACTGTCGTTCGGAAACAGTCCTAATGGAACACAATATCTTCGGTCG TTGCCTCGTGTTAGCCTTCACATGGGGCGTGTTGCTTTGTGCGTGAGTCT CCCTCTATGCGTTGCGTCGGGCCACCGTTTGCGCCGTTCGCCTGCTTCGG TCAGCCGTGTGTGCGCCACTTCGCTCAGCAATCTCGAGACAACGGTAGAG GCGCCACACGGGGAGAACAGGTTTACACGCAGGTGCATTGCCTGGCACAT CATCAGCTACTCGCTGTGTGGTTTTTGCGGCTCTCGTGTTGTTCGACGCG CACATATGGAGCTAATCAATAGCGTCACTCAACACACGAAAACGTTTTTT CACATCCCGGCAGCACTGCACCGCACCTCAACACAAATCCTTTCCAATCA TTTGGTGTCTCAAACACGCCTTTGGCCCATTCCGCGCAATCGTTTGTGTA TCCCAGGCGAAGGCGTTAACAGAAGGTCTTGGCTACACGGAGGCTGAGGT GGCCTGCATTGACCCGGACATGGCAGACCTAGCCATCGAGCGCGCCATCC GCAGGCCGGCCTCCGGCATGCCGCGAGACTGGGTTGCCGTCGGTATGCCA CCGCCGCCGCCCCCGATCCCCACCTCCACCGCCTCAGCTCCCTCCTCTTC TCAAACCTACTTCGGTGGAGGCGCTACCGCTGCCGCTGAGGATATTGGCA GGACCAGCAGGGGAAGCGGCGACCGCCGTGGTGTCGTCGACGATGGTTCA CTCGATCTCGACGCGATCCTGGGGTGAGTTGTTTGTCTCTTTTTTGTTGT GGTAAGAACTGGCGAACTTGCGTCAGCAGCGACTTTCTTCCAACACGTCT CGGTCGACTGGTTGTTTCGTGTCCTTGCTCAGCTAGATGTGGAGGTACTG AAAGCTCCAAGTCTGCTGTCACCTGCATGTACGACGTAGAATCCGGCAAG CAGAACGTCAGCCGCCAGGGCGACCAGGGAAGGAAAGAATCAAAACGCTG TTTCGACGCTTGTTCTTCGTATTCCTCATCGTTTCCCCTGTCACGGAGCG GACATATGTTCCAAACAACCAGAGTGAACATTGTACTCGGTAGAATCTGG TTCCTGAGTGTACAAGAGAGGTCTCATTCTCATACATACGCGGTAGCACT GAAATGGATGGATCGAAACGTGTCTTTTTGGTGCTTTTTCAAGCAGCGAT GGCTATGACGACAACGGGGGCGGCGGGAGGAGACGGAAGGGAACACGCCG CAACCGTTCCCGCAGCACCGCGGACGGTTGGAGAGACCAAGAAAGGAGGA AGGGAGACGACTATTATTATGATGACGGTGAGGGGGCTCCGCAAATAGGA AGGAGGGGTATGTACGATCGGGAGGAGGATTTCGTTCCCCGCGGCCGGGA CGAAGCTAGAGGGAGGGGGCGCCGCGAAATCGACGGCGGTCTGGGTGGTC CTAGGGGGCAGAGCAGGAGACCGCGGAGGAAGAAGAAAGCCAAGATTAGC CCAGCGGAGCGGTACGAGAGGCAAATTTTTGGAGAAATGGGGGGTAACGA CAGCAAGAGTGCTGGTAACAGGCGGCCCCTCTGGGATGAAGACGATGAAG AAGATCGAGGGAAGCTTTGGACGGGGGTTGGCCCTGACGGACCTTGGCCG ACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11026:329..3384-

>mRNA_Ecto-sp13_S_contig11026.910.1 ID=mRNA_Ecto-sp13_S_contig11026.910.1|Name=mRNA_Ecto-sp13_S_contig11026.910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1884bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11026:329..3384- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAAAGGTCGTAGGGTTCTGGTTGCAGCCGCCTTCGCCACAACAGC
AACGTGGCCTTCATCGACCCCTGGCCGTAGCGCTAGCAGTGCTTGGGGAT
TCCTAGCAGCTGCACCGCGATCCGCCAACTGTCTGGCTGCGAACAAGAGG
TCGGACTCTTGCCGCTCTCGCCTGTGCGGATCATGGTCTGCTGCAGACGC
AGCAGCTTCCACACGTCAACAGAGCAAGGGTATGGTGTATACCGAGCAAT
GCTTGCATGCGATTGCTGCTTTCAAAGAGAGCGGTGCGTATCCAAGCTTG
GATGCAAGACGAGAAAGAGGAGGCGAAGCCTCGTTTTTTGCGTCTCGGTT
GTGTAGCAGTAGCAGCAGCAGCAGCCGAGCCAGGCTGCTGCCGTTACCAA
GCAGAGCGGCAGGTGGAGATGGAAGAGACGGTGGGCTGGGAGGGATAGGC
CTTGATGCCGAGAGCGTGGCGCGAGCTCGCGAGGCGGCAAAGAAGGATGA
CTACGACTGGTTCATGGAATTTATCGGGGTCGACGAGGAAGCGGAGGACG
GCGGCAGTAAAAGTGGCGGTGAGGACAACAGCAGCGGGAAAGCAAGTGAC
CGCTCTAGTAGCAACAACGGCGGCGGGGTTGTAGGCGGAGCAAGCAGCGG
CACACGACGAGCTCCAACCAGTACCAGCGGGCGGTACAGCAGTACCGGCA
GCGAATATGACAACGGTTTCGTTAACGATATCGCTGGTGGCCCGCCCCCT
CGTCGGGGTCGCCCCCCGGCACCAGGACGAGGTTTCCAACCCCGCTCAGG
CGGCGTTGGCGCATCAGGGGGGATGAGGCGAGAAAGACGAACCTCGTCTG
CGGATACTGCCTACGACTACGATTTGGACGAAGAGTACGACCAGGAACCA
GGGAGGGGGGGGTGGGACTACGACCCCGGGCTTTCGGCGGGGATTGGAGC
ACGCCGGCGAGATGTGCAAGTCGACAAGGTCCGCGCGAAGACCAAGTCTG
CCTCGATGAGGCGGCCGCTAGAGGACGACCAACATTCGATGGAGGCAGAG
CAGGAGCAGGTTTTTGCCGGAAGAGCGGTTGAATTTGAGCCCGTCGGCTC
TAAAAAGGCGAAGGCGTTAACAGAAGGTCTTGGCTACACGGAGGCTGAGG
TGGCCTGCATTGACCCGGACATGGCAGACCTAGCCATCGAGCGCGCCATC
CGCAGGCCGGCCTCCGGCATGCCGCGAGACTGGGTTGCCGTCGGTATGCC
ACCGCCGCCGCCCCCGATCCCCACCTCCACCGCCTCAGCTCCCTCCTCTT
CTCAAACCTACTTCGGTGGAGGCGCTACCGCTGCCGCTGAGGATATTGGC
AGGACCAGCAGGGGAAGCGGCGACCGCCGTGGTGTCGTCGACGATGGTTC
ACTCGATCTCGACGCGATCCTGGGCGATGGCTATGACGACAACGGGGGCG
GCGGGAGGAGACGGAAGGGAACACGCCGCAACCGTTCCCGCAGCACCGCG
GACGGTTGGAGAGACCAAGAAAGGAGGAAGGGAGACGACTATTATTATGA
TGACGGTGAGGGGGCTCCGCAAATAGGAAGGAGGGGTATGTACGATCGGG
AGGAGGATTTCGTTCCCCGCGGCCGGGACGAAGCTAGAGGGAGGGGGCGC
CGCGAAATCGACGGCGGTCTGGGTGGTCCTAGGGGGCAGAGCAGGAGACC
GCGGAGGAAGAAGAAAGCCAAGATTAGCCCAGCGGAGCGGTACGAGAGGC
AAATTTTTGGAGAAATGGGGGGTAACGACAGCAAGAGTGCTGGTAACAGG
CGGCCCCTCTGGGATGAAGACGATGAAGAAGATCGAGGGAAGCTTTGGAC
GGGGGTTGGCCCTGACGGACCTTGGCCGACGTGA
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