mRNA_Ecto-sp13_S_contig11025.908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: D7FPR4_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPR4_ECTSI) HSP 1 Score: 200 bits (508), Expect = 4.550e-56 Identity = 103/141 (73.05%), Postives = 106/141 (75.18%), Query Frame = 1
Query: 1 ARRGHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDWTQDGGPRNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCGRVGTTFSSRVEATEGILAYTFERQQRFSVLD 423
ARRG+LNVVNPIFADRYYHLNLAVWDEREMAKILV LAITEPGENWLDETYTRSPEIGALYGWELPLDWTQD LEK TLCGRVGTTFSSRVEAT GILAYTFERQQR+ L+
Sbjct: 746 ARRGYLNVVNPIFADRYYHLNLAVWDEREMAKILVHLAITEPGENWLDETYTRSPEIGALYGWELPLDWTQD------------------------------LEKSTLCGRVGTTFSSRVEATVGILAYTFERQQRYLCLN 856
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: T0QSD8_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QSD8_SAPDV) HSP 1 Score: 124 bits (312), Expect = 2.570e-29 Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 10 GHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDWT-QDGGP----RNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCG 330
G LN++NP DRYY L+LAV DERE+AKI V LA+TEPGENW++ET+ + GW+LP+ WT +DGGP R G LTL Y+S+P GC P +RQ+L+ R LCG
Sbjct: 1254 GWLNILNPKVPDRYYELDLAVRDERELAKIYVALAVTEPGENWINETFAWQRSEPPIPGWQLPISWTKEDGGPEDGPRRAGWLTLEYTSAPENGCNPVWAIRQELQTRVLCG 1365
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: A0A1W0A877_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A877_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.920e-27 Identity = 55/112 (49.11%), Postives = 76/112 (67.86%), Query Frame = 1
Query: 10 GHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDWTQDGG-----PRNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCG 330
G LN+ NP DRYY L+L++ DERE+ KI V LA+TEPGENW++E++ L GW+LP+ W +D G PR G LTL Y+S+P RGC+P + +RQ+L+ + LCG
Sbjct: 1252 GWLNIFNPKHPDRYYGLDLSIRDERELTKIFVSLAVTEPGENWINESFAWVKGDEPLPGWQLPVSWAKDDGITEDGPRRSGWLTLEYTSAPERGCSPVVALRQELQSKVLCG 1363
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: A0A1V9ZMY6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMY6_9STRA) HSP 1 Score: 115 bits (289), Expect = 3.070e-26 Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1
Query: 10 GHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDWT-QDG----GPRNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCG 330
G LN++NP DRYY L+LAV DERE+AK V LA+TEPGENW++E++ S + GW+LP+ W +DG GPR G LTL Y+S+ GC+P +RQ+L+ R LCG
Sbjct: 1254 GWLNILNPKSPDRYYELDLAVRDEREVAKTFVALAVTEPGENWINESFAWSKGEPPIPGWQLPISWAKEDGSPEDGPRRSGWLTLEYTSAVENGCSPVWALRQELQSRFLCG 1365
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: A0A2P4X6I1_9STRA (DUF4476 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6I1_9STRA) HSP 1 Score: 110 bits (275), Expect = 4.630e-26 Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 10 GHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDW----TQDGGPRNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCG 330
G LN++NP+ +R Y LNL+V+DEREM K+LV LAI EPGENWL++++T + GW+LP W ++GG G L L Y S +GCAP L +R+ L KR LCG
Sbjct: 146 GWLNIMNPMVPERVYALNLSVYDEREMTKVLVELAIGEPGENWLNQSFTLVQGEPGIPGWKLPSRWEKEDNKEGGVNRAGFLGLEYYSGQDQGCAPVLSLRKSLMKRVLCG 256
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: A0A350JHE2_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A350JHE2_9FLAO) HSP 1 Score: 113 bits (283), Expect = 1.900e-25 Identity = 60/117 (51.28%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 4 RRGHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALY-----GWELPLDWTQDGGPRNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCGRVG 339
R G LN+ NP F DR Y+L L+ +D+RE+AK+LV LAI EPGENW DE Y RS G + GWELP W DGG GI++L Y S RGCAP R L++R LCG G
Sbjct: 996 RLGWLNIFNPSFPDREYYLLLSEYDQREIAKMLVYLAIAEPGENWQDELYWRSRFAGEIESDPIPGWELPTSWIDDGGIPKDGIISLAYYSGSDRGCAPVWKERAALQQRCLCGDGG 1112
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: A0A6A3F2E3_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F2E3_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.950e-25 Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 1
Query: 10 GHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDW----TQDGGPRNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCG 330
G LN++NP+ +R+Y LNL+V+DEREM K+LV LAI EPGENWL++++T + GW+LP W +++GG G L L Y S RGCAP L +R+ L KR LCG
Sbjct: 1383 GWLNMMNPMAPERFYALNLSVYDEREMTKVLVDLAIGEPGENWLNQSFTLVQGEPGIPGWKLPARWEKEDSKEGGVNRAGFLELEYYSGQDRGCAPVLSLRKTLMKRVLCG 1493
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: D0NFX5_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0NFX5_PHYIT) HSP 1 Score: 111 bits (278), Expect = 8.840e-25 Identity = 54/111 (48.65%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 10 GHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDW----TQDGGPRNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCG 330
G LN++NP+ +R+Y LNL+V+DEREM K+LV LAI EPGENWL++++T + GW+LP W ++GG G L L Y S RGCAP + +R+ L KR LCG
Sbjct: 1010 GWLNIMNPMAPERFYALNLSVYDEREMTKVLVDLAIGEPGENWLNQSFTLVQGEAGIPGWKLPSRWEKEDNKEGGVNRAGFLELEYYSGQDRGCAPVVSLRKTLIKRVLCG 1120
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: W4FRS9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FRS9_9STRA) HSP 1 Score: 111 bits (278), Expect = 9.140e-25 Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 10 GHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDWTQDG-----GPRNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCG 330
G LN++NP DRYY +L+V +ERE AKI V+LA+TEPGENW+ E++ + GWELP W D GPR G LT Y+S P RGCA VRQ+L +R LCG
Sbjct: 1350 GWLNILNPQQPDRYYEFDLSVREEREAAKIFVKLAVTEPGENWIHESFGWVRGDPPIPGWELPKSWANDDVTAEDGPRRTGWLTFEYTSDPSRGCAAVPAVRQELLQRVLCG 1461
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Match: A0A833TTK5_PHYIN (EF hand n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TTK5_PHYIN) HSP 1 Score: 111 bits (278), Expect = 9.150e-25 Identity = 54/111 (48.65%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 10 GHLNVVNPIFADRYYHLNLAVWDEREMAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDW----TQDGGPRNVGILTLWYSSSPRRGCAPNLLVRQDLEKRTLCG 330
G LN++NP+ +R+Y LNL+V+DEREM K+LV LAI EPGENWL++++T + GW+LP W ++GG G L L Y S RGCAP + +R+ L KR LCG
Sbjct: 1357 GWLNIMNPMAPERFYALNLSVYDEREMTKVLVDLAIGEPGENWLNQSFTLVQGEAGIPGWKLPSRWEKEDNKEGGVNRAGFLELEYYSGQDRGCAPVVSLRKTLIKRVLCG 1467 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11025.908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11025.908.1 >prot_Ecto-sp13_S_contig11025.908.1 ID=prot_Ecto-sp13_S_contig11025.908.1|Name=mRNA_Ecto-sp13_S_contig11025.908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp MAKILVRLAITEPGENWLDETYTRSPEIGALYGWELPLDWTQDGGPRNVGback to top mRNA from alignment at Ecto-sp13_S_contig11025:1144..3115- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11025.908.1 ID=mRNA_Ecto-sp13_S_contig11025.908.1|Name=mRNA_Ecto-sp13_S_contig11025.908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11025:1144..3115- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11025:1144..3115- >mRNA_Ecto-sp13_S_contig11025.908.1 ID=mRNA_Ecto-sp13_S_contig11025.908.1|Name=mRNA_Ecto-sp13_S_contig11025.908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11025:1144..3115- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |