mRNA_Ecto-sp13_S_contig1102.905.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1102.905.1
Unique NamemRNA_Ecto-sp13_S_contig1102.905.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1102.905.1 vs. uniprot
Match: D8LG14_ECTSI (CRAL/TRIO, N-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG14_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 1.110e-80
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:   22 RALLPGRPRVSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSRATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFAVLEGAVALGMLLSGTWCLALAGGSATLSDLTWEAMNKEV 450
            RALLPGRPRVSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSRATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFAVLEGAVA+GMLLSGTWCLALAGGSATLSDLTWEAMNKE+
Sbjct:  527 RALLPGRPRVSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSRATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFAVLEGAVAVGMLLSGTWCLALAGGSATLSDLTWEAMNKEI 669
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BLAST of mRNA_Ecto-sp13_S_contig1102.905.1 vs. uniprot
Match: A0A6H5JG98_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG98_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 4.760e-80
Identity = 143/150 (95.33%), Postives = 146/150 (97.33%), Query Frame = 1 
Query:    1 GGGL-VARRALLPGRPRVSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSRATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFAVLEGAVALGMLLSGTWCLALAGGSATLSDLTWEAMNKE 447
            GGG+ VARRALL GRPRVSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSRATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGF VLEGAVA+GMLLSGTWCLALAGGSATLSDLTWEA+N E
Sbjct:  334 GGGVSVARRALLSGRPRVSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAVSASLAVAVVVTGAFSLSRATVLGLQWCAVTAVCLGSLLLLLALLGAAGARLRNRFSLLGFVVLEGAVAVGMLLSGTWCLALAGGSATLSDLTWEAINNE 483
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1102.905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG14_ECTSI1.110e-8098.60CRAL/TRIO, N-terminus family protein n=1 Tax=Ectoc... [more]
A0A6H5JG98_9PHAE4.760e-8095.33CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1102contigEcto-sp13_S_contig1102:17273..18647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score268.1
Seed ortholog evalue2.5e-69
Seed eggNOG ortholog2880.D8LG14
Model size457
KEGG koko:K19996
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.cholestenol delta-isomerase activity
EggNOG OGsKOG1471@1,KOG1471@2759,KOG4826@1,KOG4826@2759
Cds size456
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.275778-CDS-Ecto-sp13_S_contig1102:17272..176111681462571.275778-CDS-Ecto-sp13_S_contig1102:17272..17611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1102 17273..17611 -
1681462571.2845967-CDS-Ecto-sp13_S_contig1102:18530..186471681462571.2845967-CDS-Ecto-sp13_S_contig1102:18530..18647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1102 18531..18647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1102.905.1prot_Ecto-sp13_S_contig1102.905.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1102 17273..18647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1102.905.1

>prot_Ecto-sp13_S_contig1102.905.1 ID=prot_Ecto-sp13_S_contig1102.905.1|Name=mRNA_Ecto-sp13_S_contig1102.905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
GGGLVARRALLPGRPRVSAVLGWCYQPVLRRLNQKGVDKLVRWLCFANAV
SASLAVAVVVTGAFSLSRATVLGLQWCAVTAVCLGSLLLLLALLGAAGAR
LRNRFSLLGFAVLEGAVALGMLLSGTWCLALAGGSATLSDLTWEAMNKEV
S*
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mRNA from alignment at Ecto-sp13_S_contig1102:17273..18647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1102.905.1 ID=mRNA_Ecto-sp13_S_contig1102.905.1|Name=mRNA_Ecto-sp13_S_contig1102.905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1102:17273..18647- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGGCTTGGTAGCGCGTAGGGCGTTATTGCCCGGGCGGCCGCGGGT
GTCTGCGGTGCTGGGGTGGTGCTACCAGCCCGTCTTGCGGAGGCTGAATC
AGAAGGGTGTCGACAAGGTATGTATAGCGGAATCAGAAGGGTGTCGACAA
GGTATGTATTGCGGAGTACACCGGAACGCCGATGATGCATCCTGCCTGTT
ACTTATTCAGTACTCATTGGAAGGTAAACCAGAGTCGTCTGGTATACTAC
CCATACTGTAGTCGTTGATGGAAAGGTCCCTCATCGTTAGTATTTGTCGG
TCATCACAAGAGTTGAACAGTAAACCGCCACTCGCAGCTTCTTCTATCCC
AGAAATGGATGATTCTGAGCGTCTTTGACAGAAAAACATGCAGATTTTGA
GAGGATATAACAAACGCGTTGCCCATGTGTGCTCCTTACTACTGTCGCCC
CACCTTTAAAGTACGCACGTGAAGCCGAGCGGGAGAACACAGAGGAATCT
TGTTCAGAATATCTCGCGATGATTAAGAAATAGGGTACATAGCAGGATCA
AGTTCTCGGAAAGCCCCCCATCGAAGCTCTTCATCCCAAGCCGTATATAG
GGAGGATTCGGTGTTGTTTCGTCTACGCGTTGGGCGAAACTCGGAGGTTG
GGGGGACACACGCAAACTGCCAATCGCTACAACCCGGTCGGTCCTCGCTG
CGAGCTTCACCGTCCGAGCTTCCTTGCTAATCGAACGAAATATTTGTGGT
AGGTTGTTTGGGTCGCCATTTCTCGGCGGCATTTGTCTTCTCCGCGGTCG
GGTTCCACCGCCGGCGAAGTGGCATGCGTCCAGACGCAGTCACGGCGTCA
TTTTAAAGTGGCGGCTGTCCGTGAGGTAGAGTGTTGTGCTTTCTCCTCAA
GCTCTCCCGTTTTTTGTTTTTTTGTTTTACCGTCGTGTGCGCGCACACCT
TGTTTATTACCACCTCGTTGCTCTGCGTTTTTGTTTCCCTCCCCCTCGTC
GTCTCGAATACCCCGTTGCTCTCCCCGCCCCGGCAGTTGGTGCGCTGGCT
ATGCTTCGCCAACGCGGTGTCGGCCTCGCTAGCCGTGGCCGTCGTCGTCA
CGGGGGCCTTCAGCCTCTCGAGAGCCACCGTGCTCGGCCTCCAGTGGTGC
GCGGTGACCGCCGTGTGCCTGGGCTCTCTGCTCCTCCTGCTGGCGCTGCT
TGGCGCCGCCGGCGCCCGGCTCCGCAACCGCTTCTCTCTTCTGGGCTTCG
CGGTCCTGGAGGGGGCCGTGGCCTTAGGGATGCTGCTGAGCGGCACGTGG
TGTCTGGCGCTAGCCGGCGGGTCCGCGACTCTGTCTGACCTCACGTGGGA
AGCCATGAACAAGGAGGTGAGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1102:17273..18647-

>mRNA_Ecto-sp13_S_contig1102.905.1 ID=mRNA_Ecto-sp13_S_contig1102.905.1|Name=mRNA_Ecto-sp13_S_contig1102.905.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1102:17273..18647- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGGCTTGGTAGCGCGTAGGGCGTTATTGCCCGGGCGGCCGCGGGT
GTCTGCGGTGCTGGGGTGGTGCTACCAGCCCGTCTTGCGGAGGCTGAATC
AGAAGGGTGTCGACAAGTTGGTGCGCTGGCTATGCTTCGCCAACGCGGTG
TCGGCCTCGCTAGCCGTGGCCGTCGTCGTCACGGGGGCCTTCAGCCTCTC
GAGAGCCACCGTGCTCGGCCTCCAGTGGTGCGCGGTGACCGCCGTGTGCC
TGGGCTCTCTGCTCCTCCTGCTGGCGCTGCTTGGCGCCGCCGGCGCCCGG
CTCCGCAACCGCTTCTCTCTTCTGGGCTTCGCGGTCCTGGAGGGGGCCGT
GGCCTTAGGGATGCTGCTGAGCGGCACGTGGTGTCTGGCGCTAGCCGGCG
GGTCCGCGACTCTGTCTGACCTCACGTGGGAAGCCATGAACAAGGAGGTG
AGCTAA
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