prot_Ecto-sp13_S_contig1097.851.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1097.851.1
Unique Nameprot_Ecto-sp13_S_contig1097.851.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length964
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1097.851.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 570 bits (1470), Expect = 3.350e-186
Identity = 830/905 (91.71%), Postives = 838/905 (92.60%), Query Frame = 0 
Query:   60 MSMLTEPGAANVASSSSXXDRNPSPGVGSRSAKASTQPAAARTKREKGSSSFSKRG-AAGGPRTGRTLSRDGRASFRTKLALDKIDAVRKDDWKRVLVELDKAELAEGRATTNNATAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSYXXXXXXXXXXXXXXXXXXMIREMEAEYGIKPNHIXXXXXXXXXXXXXXXXXXXXXXXXMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLVHFMREVGGVXXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGPANGXXXXXXXPPRDPVEVADACSYNTALSACEVGEQWERALSLLRDMPKRGVEPVVISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLALELLREMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQIQRDMASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLEMARDKGGERGSLEGAGAAVPSPSTAASEEAAR 963
            MSMLTEPGAANVASSS XX                   AAARTKREKGSSSFS+RG AAGGPRTGR LSRDGRASFRTKLALDKIDAVRKDDW+R+LVELDKAELAEGRATTNNA APAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVS XXXXXXXXXXXXXXXXXX IREMEAEYGIKPNHI                        MKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDL+HFMREVGGV XXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSG ANGXXXXXXX   DPVEVADACSYNTALSACEVGEQW RALSLLRDMPKRGV+PVVI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       VDLALELL EMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQ+QRDMAS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLEMAR+KGGER SLEGAGAAVP+PSTAASEEAAR
Sbjct:    1 MSMLTEPGAANVASSSXXXXXXXXXXXXXXXXXXXXXXAAARTKREKGSSSFSQRGSAAGGPRTGRALSRDGRASFRTKLALDKIDAVRKDDWRRILVELDKAELAEGRATTNNAKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVDGSGAANGXXXXXXX--XDPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGHLVAQVQRDMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLEMAREKGGERDSLEGAGAAVPNPSTAASEEAAR 903
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1097.851.1 vs. uniprot
Match: D7G1L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 8.470e-9
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 0 
Query:  121 RTGRTLSRDGRASF-RTKLALDKIDAVRKDDWKRVLVELDKAELAE---GRATTNNATAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDAC 227
            R  R  ++ GRA+F R++  + KI  + + +W+ V+ EL++AE AE   G A           VS+  Y+ C+  +AKC RW EAL +  RM   G  PNS+C+NA L+AC
Sbjct:   95 RGARRGTKKGRAAFARSRDFVVKIRGMSRWNWRGVMRELEEAETAEAKFGEAEKGTTGGSDGRVSSHAYNSCLMHLAKCSRWREALAVFERMWARGVTPNSFCLNATLEAC 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1097.851.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0M5_ECTSI3.350e-18691.71PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
D7G1L0_ECTSI8.470e-938.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 416..474
e-value: 2.4E-13
score: 49.9
coord: 751..810
e-value: 2.9E-9
score: 36.9
coord: 643..704
e-value: 3.7E-10
score: 39.7
coord: 239..299
e-value: 4.1E-10
score: 39.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 550..597
e-value: 1.7E-11
score: 44.1
coord: 866..913
e-value: 2.0E-7
score: 31.1
coord: 356..405
e-value: 6.1E-9
score: 35.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 219..252
e-value: 1.1E-4
score: 20.1
coord: 588..621
e-value: 1.6E-5
score: 22.7
coord: 694..727
e-value: 2.9E-5
score: 22.0
coord: 658..691
e-value: 4.6E-6
score: 24.5
coord: 553..587
e-value: 2.2E-8
score: 31.8
coord: 465..489
e-value: 4.0E-4
score: 18.4
coord: 395..429
e-value: 1.4E-10
score: 38.7
coord: 623..657
e-value: 1.9E-7
score: 28.8
coord: 253..287
e-value: 1.4E-5
score: 22.9
coord: 765..798
e-value: 1.0E-5
score: 23.3
coord: 430..464
e-value: 2.6E-7
score: 28.4
coord: 728..762
e-value: 1.4E-5
score: 22.9
coord: 519..550
e-value: 7.8E-4
score: 17.5
coord: 870..902
e-value: 4.3E-7
score: 27.7
coord: 361..394
e-value: 0.0013
score: 16.8
coord: 289..319
e-value: 2.7E-4
score: 18.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 836..864
e-value: 0.2
score: 12.0
coord: 519..548
e-value: 0.0061
score: 16.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 551..585
score: 12.047
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 463..497
score: 9.142
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 181..215
score: 8.462
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 322..356
score: 7.125
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 428..462
score: 12.408
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 726..760
score: 10.578
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 621..655
score: 12.737
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 691..725
score: 11.477
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 586..620
score: 11.696
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 797..831
score: 8.473
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 656..690
score: 10.775
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 216..250
score: 9.482
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 393..427
score: 13.614
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 902..932
score: 7.235
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 761..791
score: 8.988
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 516..550
score: 10.863
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 832..866
score: 8.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 287..321
score: 10.896
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 357..391
score: 8.923
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 867..901
score: 11.203
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 251..286
score: 8.923
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 144..335
e-value: 1.4E-37
score: 131.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 336..501
e-value: 2.6E-47
score: 163.7
coord: 792..948
e-value: 9.7E-34
score: 119.1
coord: 633..791
e-value: 1.8E-50
score: 174.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 509..632
e-value: 3.9E-37
score: 129.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 617..761
coord: 188..319
coord: 515..631
coord: 323..491
coord: 750..932

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1097contigEcto-sp13_S_contig1097:6095..17967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1097.851.1mRNA_Ecto-sp13_S_contig1097.851.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1097 4263..18017 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1097.851.1 ID=prot_Ecto-sp13_S_contig1097.851.1|Name=mRNA_Ecto-sp13_S_contig1097.851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=964bp
MAFIALPKLSHSSSNTAGGWLPHATQHRWRPPAVSSGSNSISFVADTGRP
RTSRATAAIMSMLTEPGAANVASSSSSSDRNPSPGVGSRSAKASTQPAAA
RTKREKGSSSFSKRGAAGGPRTGRTLSRDGRASFRTKLALDKIDAVRKDD
WKRVLVELDKAELAEGRATTNNATAPAAAVSTFVYSKCISRMAKCFRWGE
ALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDARASGIEL
DVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGR
CGKADEAASLLREMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIH
DWPVKPNVFNYNLAICTCTDCGEWEEALDLVHFMREVGGVKPDVVTYNIV
VAACGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALS
IFREMERAGVRPNIITHNAVMSACIAAGQWEEALDFFTEVVDGSGPANGG
GGGGGGPPRDPVEVADACSYNTALSACEVGEQWERALSLLRDMPKRGVEP
VVISYNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAALSNS
GRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQG
SGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATIS
ACGKDGRWEQGLALLHEMPALGLTPNEFCYTAAITGCGIGGQWERAVATF
RSMIASGIQPTVVGYTSAVSALAHCGEVDLALELLREMKEEAGIEPNEQT
YAAVILACGNGGQGHLVAQIQRDMASAGITPRLTGYLSAIRASGECGNWS
EATSLLGEMEAAGVPPTVSCYNAAITACGKSGKWQEALDLLDEMPGKGLV
RDSGTLSAAISACQKAGRGVKAAGLVEEMLEMARDKGGERGSLEGAGAAV
PSPSTAASEEAAR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf