mRNA_Ecto-sp13_S_contig1093.830.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1093.830.1
Unique NamemRNA_Ecto-sp13_S_contig1093.830.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1093.830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1093contigEcto-sp13_S_contig1093:16447..18032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size647
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000630.4
Cds size645
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462564.1885777-CDS-Ecto-sp13_S_contig1093:16446..166411681462564.1885777-CDS-Ecto-sp13_S_contig1093:16446..16641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1093 16447..16641 +
1681462564.1973338-CDS-Ecto-sp13_S_contig1093:16890..173071681462564.1973338-CDS-Ecto-sp13_S_contig1093:16890..17307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1093 16891..17307 +
1681462564.207119-CDS-Ecto-sp13_S_contig1093:17999..180321681462564.207119-CDS-Ecto-sp13_S_contig1093:17999..18032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1093 18000..18032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1093.830.1prot_Ecto-sp13_S_contig1093.830.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1093 16447..18032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1093.830.1

>prot_Ecto-sp13_S_contig1093.830.1 ID=prot_Ecto-sp13_S_contig1093.830.1|Name=mRNA_Ecto-sp13_S_contig1093.830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=215bp
SEQRSVLLSPVGLPGSRVPPSADLASWSCAAAIKQGWALQERDQPGSKEQ
GRDDEATQAGCPLQSGNTIKSSPPVESGDIAAKYSQQHSPTQPLPASPTC
CVIVGDPTSALTPELSFPKVMLTDRAHREALFSVTQSMLSTTKGLPWPTA
SWSKSDQGRKAIIAPADVVGARISLLELVASHEGKALKPPCPPTVTPAQG
RAEKQLQQHFEAITL
back to top

mRNA from alignment at Ecto-sp13_S_contig1093:16447..18032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1093.830.1 ID=mRNA_Ecto-sp13_S_contig1093.830.1|Name=mRNA_Ecto-sp13_S_contig1093.830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1093:16447..18032+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGAACAACGTTCCGTGCTTCTTTCGCCTGTTGGACTACCTGGTAGCAG
GGTGCCGCCAAGTGCCGACCTTGCATCATGGTCGTGTGCTGCAGCTATCA
AGCAAGGCTGGGCCTTGCAAGAAAGGGACCAGCCGGGATCGAAGGAGCAA
GGACGCGATGACGAAGCCACACAAGCCGGGTGTCCCTTGCAGTCGGTGCG
GTGAATTTAGCAGAAGTTGCCTCGCTCTGCGTTCTTTTGACTGTATCGTT
TCCCTTTGCCACATGAGGGAGCTTCGAGCTTCGGTGAATGTGTCAAGGCA
GTTATACCGAGAGGGTGTCTGGAACGCCTCAGTTTCATGGTCAAGCACGC
TATAGTTGCGTCAAACTTGCCCTCCTAGAGCGCAGCACGCACGTACCCCG
AACGTAACACAACGGTTTTCTAATGTTTACTCTACCACCTCCAGGGCAAT
ACCATCAAGAGCAGTCCACCGGTGGAATCGGGGGACATCGCGGCCAAGTA
CTCCCAACAGCATTCGCCCACACAACCGCTACCAGCGTCGCCAACCTGCT
GCGTGATCGTTGGCGACCCGACCTCAGCGCTCACGCCCGAGTTGTCTTTC
CCCAAAGTGATGTTGACGGACCGGGCCCATAGAGAGGCACTCTTTTCGGT
GACACAAAGCATGCTGAGCACAACCAAGGGGCTACCTTGGCCGACAGCTT
CCTGGAGCAAGAGTGATCAGGGTCGGAAAGCTATCATCGCTCCAGCTGAC
GTTGTCGGTGCCAGGATATCTCTGCTCGAGCTTGTAGCCAGCCACGAGGG
CAAGGCACTGAAGCCACCCTGTCCTCCAACGGTAACACCAGCACAAGGAA
GAGCGGAGAAGGTACGATACAAGCGGTGACATATATCATTGCATTTTTTG
CAGCACACGTTTCTGAAAATGAATGTTCCATACCCGATACGGCAGGAAAA
GAACGGTTCTACAGAGGCCAGTGAGGGCTGACGTCGGCGCACCCAATTTC
CTACCCTACTGGCAATTTTGCTAAACCGCTCGGGCAGCCCATCGGCCGCC
CATGAGCACTTCATGCGCTACCCATAAGCTACCCATGAACTCCCCATGAA
CTGCCCACGAAGTGCCCACCGTGGGCACTTCAATCTAGACCTTCGCCAAC
GGCACATCATCTAGAACTTAGCCACTCAGCGCCAGCCTATCACGTATCGT
GCGGGTTTGGGGTAATAGGGTTAGCGTTAGGGTTTTTTGCTGTAACTATG
CCCCGTCCAAAGCAGACAATCGTTACGGTTGAAGGGCATTCATTGACGGT
CCATGGGCTTGCCCGTGGGCATTCCCCACGGGTGCCCCGTGGGAGGTTTA
GCAGCACTGTAGAAAGTGTGGGAGACGCGGCGCACCTCATCGAAGCAGTT
TTAGCCATTGTCCGTGCCCAAACCAGCAACAAGCACATTCGAGTTGGGCA
CACTATTTTCATGCTATTCTTAGCGTCTCGCGAACAGTAAGTGGAAAATA
AAGTCAACTGTTGAGTGAATGACACACGTGCCCTGCGACCGCAACATCAA
CAGCAGCTGCAGCAGCATTTTGAGGCGATCACACTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1093:16447..18032+

>mRNA_Ecto-sp13_S_contig1093.830.1 ID=mRNA_Ecto-sp13_S_contig1093.830.1|Name=mRNA_Ecto-sp13_S_contig1093.830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1093:16447..18032+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGAACAACGTTCCGTGCTTCTTTCGCCTGTTGGACTACCTGGTAGCAG
GGTGCCGCCAAGTGCCGACCTTGCATCATGGTCGTGTGCTGCAGCTATCA
AGCAAGGCTGGGCCTTGCAAGAAAGGGACCAGCCGGGATCGAAGGAGCAA
GGACGCGATGACGAAGCCACACAAGCCGGGTGTCCCTTGCAGTCGGGCAA
TACCATCAAGAGCAGTCCACCGGTGGAATCGGGGGACATCGCGGCCAAGT
ACTCCCAACAGCATTCGCCCACACAACCGCTACCAGCGTCGCCAACCTGC
TGCGTGATCGTTGGCGACCCGACCTCAGCGCTCACGCCCGAGTTGTCTTT
CCCCAAAGTGATGTTGACGGACCGGGCCCATAGAGAGGCACTCTTTTCGG
TGACACAAAGCATGCTGAGCACAACCAAGGGGCTACCTTGGCCGACAGCT
TCCTGGAGCAAGAGTGATCAGGGTCGGAAAGCTATCATCGCTCCAGCTGA
CGTTGTCGGTGCCAGGATATCTCTGCTCGAGCTTGTAGCCAGCCACGAGG
GCAAGGCACTGAAGCCACCCTGTCCTCCAACGGTAACACCAGCACAAGGA
AGAGCGGAGAAGCAGCTGCAGCAGCATTTTGAGGCGATCACACTC
back to top