mRNA_Ecto-sp13_S_contig10894.797.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10894.797.1
Unique NamemRNA_Ecto-sp13_S_contig10894.797.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10894.797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10894contigEcto-sp13_S_contig10894:3738..4551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size815
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.5289004-UTR-Ecto-sp13_S_contig10894:3737..41251681462561.5289004-UTR-Ecto-sp13_S_contig10894:3737..4125Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10894 3738..4125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462561.543327-CDS-Ecto-sp13_S_contig10894:4125..45511681462561.543327-CDS-Ecto-sp13_S_contig10894:4125..4551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10894 4126..4551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10894.797.1prot_Ecto-sp13_S_contig10894.797.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10894 4126..4551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10894.797.1

>prot_Ecto-sp13_S_contig10894.797.1 ID=prot_Ecto-sp13_S_contig10894.797.1|Name=mRNA_Ecto-sp13_S_contig10894.797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MSTAPPHPTQNQTKNAVGSTRQTCDNLHREYKTYSSVERATRCVDAPPNA
CNNIRQHQDRRRRKSKGAYVPTDVRATITESINRGMEAVCMPTSNEPSRP
GQANSILNKEQALSLFLSLSGLLHAPNPTTGWVYHSTPITAT
back to top

mRNA from alignment at Ecto-sp13_S_contig10894:3738..4551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10894.797.1 ID=mRNA_Ecto-sp13_S_contig10894.797.1|Name=mRNA_Ecto-sp13_S_contig10894.797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=814bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10894:3738..4551+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGATCAGGTCCCCCCACGCGCATGCATGCGCAGCCACCTGCAGTAAAGT
CTGTCAACAAATCAACAGCACACACACTAAAAGCACGTCCGATGACAAAC
ATAAAAAGCAAGTCAAACCAACAACTACAAGCTACAACACGAAACGAGCA
ATGCGTGAGCGCTCTGAAAATACGACCGCACAAAAACTGCCAACAAACTT
GTAGGGAGGGGTGAATTGCTCGGTAGACAACCAACGGTAGCCCCACCTGC
CTGTATCGGGCCGTGCGATGTGCCACTACGGCTACACCGCGTTGTTACGC
GTGTCAAACAAGTCGGCGGATCAAACACCCTCGCATTTGACAGCAAAGTC
CCTCCCCCCAGGGACTACCGACTACGGCGTCCTGTTACATGAGTACCGCC
CCACCCCACCCCACCCAAAATCAAACGAAAAACGCTGTTGGCAGCACCCG
CCAAACTTGCGACAACCTCCACCGGGAGTACAAGACATACAGCAGCGTCG
AGCGCGCGACGCGTTGTGTTGATGCACCACCGAACGCCTGCAACAACATA
CGACAACATCAAGACAGGAGGAGGAGGAAGAGCAAAGGAGCGTATGTACC
GACCGATGTACGAGCAACAATCACGGAATCGATCAATCGCGGGATGGAGG
CTGTGTGCATGCCCACCAGCAACGAACCGTCGAGACCAGGCCAGGCGAAC
TCGATCCTCAACAAAGAACAAGCTCTCTCTCTCTTTCTCTCTCTCTCTGG
ACTTTTGCACGCACCTAATCCAACCACTGGCTGGGTGTACCACAGCACAC
CAATCACGGCGACA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10894:3738..4551+

>mRNA_Ecto-sp13_S_contig10894.797.1 ID=mRNA_Ecto-sp13_S_contig10894.797.1|Name=mRNA_Ecto-sp13_S_contig10894.797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10894:3738..4551+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTACCGCCCCACCCCACCCCACCCAAAATCAAACGAAAAACGCTGT
TGGCAGCACCCGCCAAACTTGCGACAACCTCCACCGGGAGTACAAGACAT
ACAGCAGCGTCGAGCGCGCGACGCGTTGTGTTGATGCACCACCGAACGCC
TGCAACAACATACGACAACATCAAGACAGGAGGAGGAGGAAGAGCAAAGG
AGCGTATGTACCGACCGATGTACGAGCAACAATCACGGAATCGATCAATC
GCGGGATGGAGGCTGTGTGCATGCCCACCAGCAACGAACCGTCGAGACCA
GGCCAGGCGAACTCGATCCTCAACAAAGAACAAGCTCTCTCTCTCTTTCT
CTCTCTCTCTGGACTTTTGCACGCACCTAATCCAACCACTGGCTGGGTGT
ACCACAGCACACCAATCACGGCGACA
back to top