mRNA_Ecto-sp13_S_contig100571.80.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100571.80.1
Unique NamemRNA_Ecto-sp13_S_contig100571.80.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A1I9LVU6_9PHAE (50S ribosomal protein L5, chloroplastic n=14 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVU6_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 7.030e-55
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLT 264
            LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLT
Sbjct:   99 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLT 186
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BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A0R6LUT7_UNDPI (50S ribosomal protein L5, chloroplastic n=24 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6LUT7_UNDPI)

HSP 1 Score: 170 bits (431), Expect = 2.700e-52
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
            LRS KMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKG NISIVTTA+TK EGIALLKEFGFPLTD
Sbjct:   99 LRSKKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGFNISIVTTAQTKIEGIALLKEFGFPLTD 187
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BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A141BSM9_9PHAE (50S ribosomal protein L5, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM9_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 3.130e-51
Identity = 81/89 (91.01%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
            LR+ KMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEI+YENVDQI+GLNISIVTTAKTK+EG+ALLKEFGFPL +
Sbjct:   99 LRNKKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEINYENVDQIRGLNISIVTTAKTKSEGVALLKEFGFPLNE 187
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BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A8F0F770_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F770_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.560e-50
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
            LR+ KMY FLEKL+HLVLPRIRDFRGLS KGFDR GNYNFGL+EQLVFPEI+YENVDQIKG NISIVTTAKTKNEGIALLKEFGFPLTD
Sbjct:   99 LRNNKMYTFLEKLVHLVLPRIRDFRGLSSKGFDREGNYNFGLQEQLVFPEINYENVDQIKGFNISIVTTAKTKNEGIALLKEFGFPLTD 187
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BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A2R4QQ29_9PHAE (50S ribosomal protein L5, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ29_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 5.150e-50
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPL 261
            LR+ KMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISY++VDQ+KGLNISIVTTA+TK+EGIALLKEFGFPL
Sbjct:   99 LRNKKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYDSVDQVKGLNISIVTTAQTKSEGIALLKEFGFPL 185
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BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A8E6D6M4_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6M4_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 8.460e-49
Identity = 76/89 (85.39%), Postives = 85/89 (95.51%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
            LR++KMY FLEKLIHLVLPRIRDFRGLSLKGFDR GNYNFGL+EQL FPEI+YE++DQ++G NISIVTTAKT+NEGIALLKEFGFPLTD
Sbjct:   99 LRNSKMYIFLEKLIHLVLPRIRDFRGLSLKGFDREGNYNFGLREQLAFPEINYESIDQLRGFNISIVTTAKTRNEGIALLKEFGFPLTD 187
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BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A2I4Q2J9_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2J9_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 9.790e-48
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
            LR TKMY FLEKLIHLVLPRIRDFRGLS K FDRNGNY+FGL+EQLVFPEISYENVDQI+GLNISIVTTAKT+ EGIALLKEFGFPL +
Sbjct:   99 LRQTKMYTFLEKLIHLVLPRIRDFRGLSTKNFDRNGNYHFGLQEQLVFPEISYENVDQIRGLNISIVTTAKTQAEGIALLKEFGFPLIE 187
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BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: B7T1X2_VAULI (50S ribosomal protein L5, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1X2_VAULI)

HSP 1 Score: 151 bits (381), Expect = 1.010e-44
Identity = 70/89 (78.65%), Postives = 84/89 (94.38%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
            LR  KMY+FLEKLIHLVLPRIRDFRGLS+KGFD+NGN+NFG++EQLVFPEI+Y+ ++Q +GLNI+IV+TAKTK+EGIALLKEFGFPL D
Sbjct:   97 LRGNKMYSFLEKLIHLVLPRIRDFRGLSIKGFDKNGNFNFGIREQLVFPEINYDIINQTRGLNITIVSTAKTKDEGIALLKEFGFPLID 185
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BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A7S6ZPC4_9STRA (50S ribosomal protein L5, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPC4_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.700e-44
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD 267
            LR  KMY FLEKLIHLVLPR+RDFRGLS KGFD+ GNYNFGL+EQLVFPEI+Y++VD+ +G NISIVTTAKTK+EGI+LLKEFGFPL D
Sbjct:  102 LRKLKMYDFLEKLIHLVLPRVRDFRGLSTKGFDKFGNYNFGLQEQLVFPEINYDDVDKTRGFNISIVTTAKTKDEGISLLKEFGFPLVD 190
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Match: A0A8E5BGR0_9PHAE (50S ribosomal protein L5, chloroplastic n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BGR0_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.180e-39
Identity = 66/87 (75.86%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 LRSTKMYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYENVDQIKGLNISIVTTAKTKNEGIALLKEFGFPL 261
            LR+ KMY FL KLIHLVLPRIRDFRGLS+KGFDR GNYNFGLKEQLVFPEI+YE+V +I G NIS+VTTA+T+ EG  LL++FGFP+
Sbjct:   98 LRNKKMYEFLTKLIHLVLPRIRDFRGLSIKGFDRKGNYNFGLKEQLVFPEINYEDVKKINGFNISLVTTAQTEVEGKYLLEQFGFPI 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100571.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVU6_9PHAE7.030e-55100.0050S ribosomal protein L5, chloroplastic n=14 Tax=P... [more]
A0A0R6LUT7_UNDPI2.700e-5295.5150S ribosomal protein L5, chloroplastic n=24 Tax=P... [more]
A0A141BSM9_9PHAE3.130e-5191.0150S ribosomal protein L5, chloroplastic n=14 Tax=S... [more]
A0A8F0F770_9PHAE2.560e-5089.8950S ribosomal protein L5, chloroplastic n=1 Tax=Pr... [more]
A0A2R4QQ29_9PHAE5.150e-5091.9550S ribosomal protein L5, chloroplastic n=3 Tax=Fu... [more]
A0A8E6D6M4_9PHAE8.460e-4985.3950S ribosomal protein L5, chloroplastic n=1 Tax=Is... [more]
A0A2I4Q2J9_9PHAE9.790e-4887.6450S ribosomal protein L5, chloroplastic n=1 Tax=Di... [more]
B7T1X2_VAULI1.010e-4478.6550S ribosomal protein L5, chloroplastic n=1 Tax=Va... [more]
A0A7S6ZPC4_9STRA6.700e-4479.7850S ribosomal protein L5, chloroplastic n=1 Tax=Sc... [more]
A0A8E5BGR0_9PHAE2.180e-3975.8650S ribosomal protein L5, chloroplastic n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100571contigEcto-sp13_S_contig100571:208..477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score172.2
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D1J740
Preferred namerpl5
Model size270
KEGG koko:K02931
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031974,GO:0032543,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0094@1,KOG0398@2759
Cds size255
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.0290504-CDS-Ecto-sp13_S_contig100571:207..4621681462504.0290504-CDS-Ecto-sp13_S_contig100571:207..462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100571 208..462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462504.0423727-UTR-Ecto-sp13_S_contig100571:462..4771681462504.0423727-UTR-Ecto-sp13_S_contig100571:462..477Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig100571 463..477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100571.80.1prot_Ecto-sp13_S_contig100571.80.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100571 208..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100571.80.1

>prot_Ecto-sp13_S_contig100571.80.1 ID=prot_Ecto-sp13_S_contig100571.80.1|Name=mRNA_Ecto-sp13_S_contig100571.80.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MYAFLEKLIHLVLPRIRDFRGLSLKGFDRNGNYNFGLKEQLVFPEISYEN
VDQIKGLNISIVTTAKTKNEGIALLKEFGFPLTD*
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mRNA from alignment at Ecto-sp13_S_contig100571:208..477-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100571.80.1 ID=mRNA_Ecto-sp13_S_contig100571.80.1|Name=mRNA_Ecto-sp13_S_contig100571.80.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100571:208..477- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTAGAAGTACAAAAATGTACGCTTTTTTAGAAAAATTAATTCATCTAGT
CTTACCACGGATTAGAGATTTTCGAGGTTTAAGTTTAAAAGGATTTGATC
GTAATGGTAATTATAATTTTGGATTAAAAGAACAATTGGTTTTCCCAGAA
ATTAGTTATGAAAATGTCGATCAAATAAAAGGTCTTAATATTTCTATAGT
AACAACAGCAAAAACAAAAAATGAGGGAATTGCTCTTCTAAAAGAATTTG
GTTTTCCATTAACTGATTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100571:208..477-

>mRNA_Ecto-sp13_S_contig100571.80.1 ID=mRNA_Ecto-sp13_S_contig100571.80.1|Name=mRNA_Ecto-sp13_S_contig100571.80.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100571:208..477- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACGCTTTTTTAGAAAAATTAATTCATCTAGTCTTACCACGGATTAG
AGATTTTCGAGGTTTAAGTTTAAAAGGATTTGATCGTAATGGTAATTATA
ATTTTGGATTAAAAGAACAATTGGTTTTCCCAGAAATTAGTTATGAAAAT
GTCGATCAAATAAAAGGTCTTAATATTTCTATAGTAACAACAGCAAAAAC
AAAAAATGAGGGAATTGCTCTTCTAAAAGAATTTGGTTTTCCATTAACTG
ATTAA
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