mRNA_Ecto-sp13_S_contig100571.79.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig100571.79.1
Unique Name	mRNA_Ecto-sp13_S_contig100571.79.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A1I9LVH6_9PHAE (30S ribosomal protein S8, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVH6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.400e-12
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 1

Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSVV 108
            +TTDI+ADTLTRIRNANMVRHQIVRV+NTKITF+VV
Sbjct:    1 MTTDILADTLTRIRNANMVRHQIVRVINTKITFAVV 36

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A2R4QQ52_9PHAE (30S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxID=2870 RepID=A0A2R4QQ52_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.950e-8
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1

Query:   16 IADTLTRIRNANMVRHQIVRVVNTKITFSVV 108
            IADTLTRIRNAN+VRHQIVRV+ TKITFSV+
Sbjct:    2 IADTLTRIRNANLVRHQIVRVIKTKITFSVI 32

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A8E5BE99_9PHAE (Ribosomal protein S8 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BE99_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.440e-8
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1

Query:    7 TDIIADTLTRIRNANMVRHQIVRVVNTKITFSVV 108
            TDIIAD LTRIRNA +VRHQIVRV+NTK+T S+V
Sbjct:    3 TDIIADMLTRIRNATLVRHQIVRVINTKMTLSIV 36

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A6B9TPR3_SARFS (30S ribosomal protein S8, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TPR3_SARFS)

HSP 1 Score: 52.8 bits (125), Expect = 1.660e-7
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1

Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105
            +TTD IAD LTRIRNAN+VRHQIVRV+ TKI FS+
Sbjct:    1 MTTDRIADMLTRIRNANLVRHQIVRVIKTKIIFSL 35

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A7S6ZPB1_9STRA (30S ribosomal protein S8, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.310e-6
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1

Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105
            +TTD IAD LTRIRNAN+VRHQIV+V+ TK+T SV
Sbjct:    1 MTTDNIADMLTRIRNANLVRHQIVQVLKTKMTLSV 35

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A2I4Q355_9PHAE (30S ribosomal protein S8, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q355_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.840e-6
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1

Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105
            +TTDIIAD LTRIRNAN+VRH++V+V+ T +T SV
Sbjct:    1 MTTDIIADMLTRIRNANLVRHRLVQVIKTNLTISV 35

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A8F0F790_9PHAE (Ribosomal protein S8 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F790_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 1.440e-5
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1

Query:   10 DIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105
            D IAD LTRIRNAN+VRHQIV+++ TKIT S+
Sbjct:    4 DSIADMLTRIRNANLVRHQIVQILKTKITLSI 35

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: UPI001FCD8479 (ribosomal protein S8 n=1 Tax=Rhodaphanes brevistipitata TaxID=446136 RepID=UPI001FCD8479)

HSP 1 Score: 47.0 bits (110), Expect = 2.860e-5
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1

Query:   10 DIIADTLTRIRNANMVRHQIVRVVNTKITFSVV 108
            DII+DTLTRIRNAN+ RHQIV++  TK+T SVV
Sbjct:    4 DIISDTLTRIRNANLARHQIVQIPATKMTRSVV 36

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: UPI001FCE23C7 (ribosomal protein S8 n=1 Tax=Chroothece richteriana TaxID=101928 RepID=UPI001FCE23C7)

HSP 1 Score: 47.0 bits (110), Expect = 2.860e-5
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1

Query:    1 VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSV 105
            +T D IADTLTRIRNAN+ RHQIV++  TK+T SV
Sbjct:    1 MTNDTIADTLTRIRNANLARHQIVQIRATKMTHSV 35

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Match: A0A1C9CGB4_9FLOR (Ribosomal protein S8 n=1 Tax=Hildenbrandia rubra TaxID=31481 RepID=A0A1C9CGB4_9FLOR)

HSP 1 Score: 46.6 bits (109), Expect = 4.020e-5
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1

Query:   10 DIIADTLTRIRNANMVRHQIVRVVNTKITFSVVYHCRS 123
            DIIAD LTRIRNAN+ +HQIV+V  TKIT S+V   RS
Sbjct:    4 DIIADMLTRIRNANLEKHQIVQVPATKITSSIVTVLRS 41

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig100571.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
A0A1I9LVH6_9PHAE	7.400e-12	88.89	30S ribosomal protein S8, chloroplastic n=33 Tax=P...	[more]
A0A2R4QQ52_9PHAE	1.950e-8	87.10	30S ribosomal protein S8 n=4 Tax=Phaeophyceae TaxI...	[more]
A0A8E5BE99_9PHAE	4.440e-8	79.41	Ribosomal protein S8 n=1 Tax=Phaeophyceae sp. TaxI...	[more]
A0A6B9TPR3_SARFS	1.660e-7	77.14	30S ribosomal protein S8, chloroplastic n=14 Tax=S...	[more]
A0A7S6ZPB1_9STRA	1.310e-6	74.29	30S ribosomal protein S8, chloroplastic n=1 Tax=Sc...	[more]
A0A2I4Q355_9PHAE	1.840e-6	68.57	30S ribosomal protein S8, chloroplastic n=1 Tax=Di...	[more]
A0A8F0F790_9PHAE	1.440e-5	71.88	Ribosomal protein S8 n=1 Tax=Protohalopteris sp. T...	[more]
UPI001FCD8479	2.860e-5	72.73	ribosomal protein S8 n=1 Tax=Rhodaphanes brevistip...	[more]
UPI001FCE23C7	2.860e-5	68.57	ribosomal protein S8 n=1 Tax=Chroothece richterian...	[more]
A0A1C9CGB4_9FLOR	4.020e-5	68.42	Ribosomal protein S8 n=1 Tax=Hildenbrandia rubra T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig100571	contig	Ecto-sp13_S_contig100571:66..188 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	64.7
Seed ortholog evalue	1.2e-08
Seed eggNOG ortholog	2880.D1J739
Preferred name	rps8
Model size	123
KEGG ko	ko:K02994
KEGG Pathway	ko03010,map03010
KEGG Module	M00178,M00179
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015935,GO:0016020,GO:0022626,GO:0022627,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Exons	1
EggNOG free text desc.	structural constituent of ribosome
EggNOG OGs	COG0096@1,KOG1754@2759
Cds size	123
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462503.9820266-CDS-Ecto-sp13_S_contig100571:65..188	1681462503.9820266-CDS-Ecto-sp13_S_contig100571:65..188	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig100571 66..188 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig100571.79.1	prot_Ecto-sp13_S_contig100571.79.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig100571 66..188 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig100571:66..188-
coding sequence from alignment at Ecto-sp13_S_contig100571:66..188-

protein sequence of mRNA_Ecto-sp13_S_contig100571.79.1

>prot_Ecto-sp13_S_contig100571.79.1 ID=prot_Ecto-sp13_S_contig100571.79.1|Name=mRNA_Ecto-sp13_S_contig100571.79.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
VTTDIIADTLTRIRNANMVRHQIVRVVNTKITFSVVYHCRS

mRNA from alignment at Ecto-sp13_S_contig100571:66..188-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig100571.79.1 ID=mRNA_Ecto-sp13_S_contig100571.79.1|Name=mRNA_Ecto-sp13_S_contig100571.79.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100571:66..188- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACCACAGATATTATTGCAGATACATTAACTCGTATTCGAAATGCAAA
TATGGTTCGTCATCAAATTGTTCGCGTGGTAAATACTAAAATAACATTTT
CAGTTGTTTATCATTGCAGGTCA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100571:66..188-

>mRNA_Ecto-sp13_S_contig100571.79.1 ID=mRNA_Ecto-sp13_S_contig100571.79.1|Name=mRNA_Ecto-sp13_S_contig100571.79.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100571:66..188- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGACCACAGATATTATTGCAGATACATTAACTCGTATTCGAAATGCAAA
TATGGTTCGTCATCAAATTGTTCGCGTGGTAAATACTAAAATAACATTTT
CAGTTGTTTATCATTGCAGGTCA