mRNA_Ecto-sp13_S_contig10876.784.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10876.784.1
Unique NamemRNA_Ecto-sp13_S_contig10876.784.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10876.784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10876contigEcto-sp13_S_contig10876:4531..4931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size219
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462560.648556-UTR-Ecto-sp13_S_contig10876:4530..45421681462560.648556-UTR-Ecto-sp13_S_contig10876:4530..4542Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10876 4531..4542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462560.6674368-CDS-Ecto-sp13_S_contig10876:4542..47021681462560.6674368-CDS-Ecto-sp13_S_contig10876:4542..4702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10876 4543..4702 +
1681462560.6793346-CDS-Ecto-sp13_S_contig10876:4884..49311681462560.6793346-CDS-Ecto-sp13_S_contig10876:4884..4931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10876 4885..4931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10876.784.1prot_Ecto-sp13_S_contig10876.784.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10876 4543..4931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10876.784.1

>prot_Ecto-sp13_S_contig10876.784.1 ID=prot_Ecto-sp13_S_contig10876.784.1|Name=mRNA_Ecto-sp13_S_contig10876.784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MGRPSKIPAPAAAAAAAGVSDRPRFLFRREEGLSLAAPPVTSAGACTACT
AVGGRRWHNGGRRLRCRRR
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mRNA from alignment at Ecto-sp13_S_contig10876:4531..4931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10876.784.1 ID=mRNA_Ecto-sp13_S_contig10876.784.1|Name=mRNA_Ecto-sp13_S_contig10876.784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10876:4531..4931+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAACGGGCTGATGGGAAGACCGTCGAAAATCCCGGCGCCTGCTGCCGC
CGCGGCGGCAGCCGGGGTCTCTGACCGGCCGCGCTTTCTCTTCCGTCGAG
AGGAAGGGCTCTCGCTGGCTGCTCCCCCGGTTACCTCCGCCGGCGCCTGT
ACCGCCTGCACAGCGGTTGGCGGCGGCGGTGGCGGCGGTGCGAACGGAAG
CACCGGCATCACCGCGGCGGCAGGGACCGCAACGGCGGCAACGTCGACCG
CGGGGGCGACCGGCGAGGCCGCCGGCTTGCGCTTCTTGGACTTCCGCGCG
GCGGCGGCCGCCGCCGCCACGGCCGCCGGGGAGGCCGCCACGGCTACCGG
GGAGGCCGGCGGTGGCACAACGGCGGCAGGCGGCTCCGTTGCCGTCGGCG
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10876:4531..4931+

>mRNA_Ecto-sp13_S_contig10876.784.1 ID=mRNA_Ecto-sp13_S_contig10876.784.1|Name=mRNA_Ecto-sp13_S_contig10876.784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10876:4531..4931+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAAGACCGTCGAAAATCCCGGCGCCTGCTGCCGCCGCGGCGGCAGC
CGGGGTCTCTGACCGGCCGCGCTTTCTCTTCCGTCGAGAGGAAGGGCTCT
CGCTGGCTGCTCCCCCGGTTACCTCCGCCGGCGCCTGTACCGCCTGCACA
GCGGTTGGCGGCCGGCGGTGGCACAACGGCGGCAGGCGGCTCCGTTGCCG
TCGGCGG
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