mRNA_Ecto-sp13_S_contig1087.778.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1087.778.1
Unique NamemRNA_Ecto-sp13_S_contig1087.778.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1087.778.1 vs. uniprot
Match: D8LCJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ8_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.830e-25
Identity = 54/68 (79.41%), Postives = 58/68 (85.29%), Query Frame = -1 
Query:  145 GLLAMYTRLDATCETSEFLCDLVAFLHDEIGLGTENLLRRLGFRVMRPGLPLNLDEIEDPVSETRGMV 348
            G   +   +DA CETSEFLCDLVAFLHDEIGLGTENLLRRLGFRVMRPGLPL+LDEIEDPV  TRG +
Sbjct:   78 GAAVLAASIDAACETSEFLCDLVAFLHDEIGLGTENLLRRLGFRVMRPGLPLSLDEIEDPV--TRGRI 143
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BLAST of mRNA_Ecto-sp13_S_contig1087.778.1 vs. uniprot
Match: A0A6H5JYN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYN4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.330e-24
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = -1 
Query:  154 GLLAMYTRLDATCETSEFLCDLVAFLHDEIGLGTENLLRRLGFRVMRPGLPLNLDEIEDPVSETR 348
            G   +   +DA CETSEFLCDLVAFLHDEI LGTENLLRRLGFRVMRPGLPLNLDEIEDPV+  R
Sbjct:  136 GAAVLAASIDAACETSEFLCDLVAFLHDEIELGTENLLRRLGFRVMRPGLPLNLDEIEDPVTRAR 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1087.778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCJ8_ECTSI4.830e-2579.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYN4_9PHAE2.330e-2480.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1087contigEcto-sp13_S_contig1087:8047..9327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size636
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462560.295722-UTR-Ecto-sp13_S_contig1087:8046..82791681462560.295722-UTR-Ecto-sp13_S_contig1087:8046..8279Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1087 8047..8279 -
1681462560.324367-UTR-Ecto-sp13_S_contig1087:9305..93271681462560.324367-UTR-Ecto-sp13_S_contig1087:9305..9327Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1087 9306..9327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462560.30531-CDS-Ecto-sp13_S_contig1087:8279..85561681462560.30531-CDS-Ecto-sp13_S_contig1087:8279..8556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1087 8280..8556 -
1681462560.3147824-CDS-Ecto-sp13_S_contig1087:9201..93051681462560.3147824-CDS-Ecto-sp13_S_contig1087:9201..9305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1087 9202..9305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1087.778.1prot_Ecto-sp13_S_contig1087.778.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1087 8280..9305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1087.778.1

>prot_Ecto-sp13_S_contig1087.778.1 ID=prot_Ecto-sp13_S_contig1087.778.1|Name=mRNA_Ecto-sp13_S_contig1087.778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MDGRQGDPAFTIRLPRAGTYSSGNTPQQSSPDECARAAWHTTMPRVSLTG
SSISSRLRGSPGRITRKPNRRRRFSVPSPISSCKNATRSQRNSDVSQVAS
SRVYIASNPGGRRERKGGDGSFWNQF*
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mRNA from alignment at Ecto-sp13_S_contig1087:8047..9327-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1087.778.1 ID=mRNA_Ecto-sp13_S_contig1087.778.1|Name=mRNA_Ecto-sp13_S_contig1087.778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1281bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1087:8047..9327- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGAGCCGGTTTTCGTGAACGATGGATGGACGTCAAGGAGATCCTGCTT
TCACAATCCGTTTACCGCGGGCAGGCACATATTCATCGGGCAACACACCG
CAACAAAGCTCGCCCGACGAGTGCGCGTAAGTCTTCTCGAAGAATTTGAC
TACGCATGTGGTAGGTTTCCCTACTCCTGAACTGCTCCGCCGTTTCCGGT
TCTTAGGGCACGCGCTCGGGGAGAGAGAGAGAATCCGCCGGCAGTGTGTA
GCGTCGAGCCGCGCCAAGCTCCTCTGCTCGCACTAGGACGTGCTAACCGA
TGCGTCGTTGCAAAAATGTAGAGAAGATAAAGACAGCAATAACCCCACCG
CAAGCCCCCGTGTGCCGACAGTGTTGCTGTTTTTTCGGACGCCTCAGACG
TTCACCTCCTCAGATCTCCACACAACTGAGCTTGGCTTCGGTGGCAACGG
CGGTTTTGCATACAAGCTCCGATGCGGCAGCAATGCTGCGAAGGAGGGTT
TAATGATCGGTCTCTTTTGCATTGGCTTTATCGACAACCGGGATATCTTT
GGACAGCACTACCTCAATGCGGCTCACGAGCTAGAATAGCAAACACCAGG
GCCCCAGACCAAAACAATATCGAAAGTCTTGTACCCCCTTTCTTCACCCA
TTCTACTCCGAATCAACCCTCAAGGGACAACCTGCCTATATGCGAGGCAG
GTGAACATAAACGAGGTAGTATAAACTTTCCTCGTCCCCAACGCTTCTCC
GCTAAATTCTCGACATCATAGCAGGGCCGCATGGCACACAACCATGCCAC
GCGTCTCGCTCACCGGATCCTCGATCTCATCGAGGTTAAGGGGAAGCCCA
GGTCGCATCACTCGGAAGCCCAATCGCCGCAGAAGATTCTCCGTCCCGAG
CCCGATCTCGTCGTGCAAGAACGCCACCAGATCGCAGAGGAACTCCGACG
TCTCACAGGTCGCGTCTAGCCGGGTATACATCGCGAGTAACCCAGGCGGC
CGAAGAGAGAGAAAGGGAGGAGACGGTAGTTTTTGGAATCAATTTTAGTG
CGGAACACAGGTACTGAATGCAAGGAACAATCTAGATAGGGGCGTGCGTG
ATGCTACCAGCGAGAGAGACGGTCGGACGAAGAGAGAAGCGAAGCGAATT
GTTTCAGAGTTTTTCACGTCCCCAACAGTATGGAACAATTGTGCCTAAAA
CAACAATACAAACAATCTATTGGCGTGCACGTTACCACCAGTGAGAGAGA
GAGGTGGTCCCCGGAAAAAAAAAATCGATCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1087:8047..9327-

>mRNA_Ecto-sp13_S_contig1087.778.1 ID=mRNA_Ecto-sp13_S_contig1087.778.1|Name=mRNA_Ecto-sp13_S_contig1087.778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1087:8047..9327- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGGACGTCAAGGAGATCCTGCTTTCACAATCCGTTTACCGCGGGC
AGGCACATATTCATCGGGCAACACACCGCAACAAAGCTCGCCCGACGAGT
GCGCCAGGGCCGCATGGCACACAACCATGCCACGCGTCTCGCTCACCGGA
TCCTCGATCTCATCGAGGTTAAGGGGAAGCCCAGGTCGCATCACTCGGAA
GCCCAATCGCCGCAGAAGATTCTCCGTCCCGAGCCCGATCTCGTCGTGCA
AGAACGCCACCAGATCGCAGAGGAACTCCGACGTCTCACAGGTCGCGTCT
AGCCGGGTATACATCGCGAGTAACCCAGGCGGCCGAAGAGAGAGAAAGGG
AGGAGACGGTAGTTTTTGGAATCAATTTTAG
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