mRNA_Ecto-sp13_S_contig100490.75.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100490.75.1
Unique NamemRNA_Ecto-sp13_S_contig100490.75.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: D8LPM7_ECTSI (RPA_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM7_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.690e-8
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:   43 TAVQFLSSEGHLYSTIDDDHYRSTET 120
            TAVQFLSSEGHLYSTIDDDHYRSTET
Sbjct:  304 TAVQFLSSEGHLYSTIDDDHYRSTET 329
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A2I0LS00_COLLI (Replication protein A2, 32kDa n=1 Tax=Columba livia TaxID=8932 RepID=A0A2I0LS00_COLLI)

HSP 1 Score: 51.6 bits (122), Expect = 1.290e-6
Identity = 20/27 (74.07%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
            + AV+FLSSEGH+YST+DDDHY+ST+T
Sbjct:  184 KQAVEFLSSEGHIYSTVDDDHYKSTDT 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A7K4IV34_GEOCA (RFA2 protein (Fragment) n=1 Tax=Geococcyx californianus TaxID=8947 RepID=A0A7K4IV34_GEOCA)

HSP 1 Score: 50.8 bits (120), Expect = 1.420e-6
Identity = 20/26 (76.92%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   40 RTAVQFLSSEGHLYSTIDDDHYRSTE 117
            R AV+FLSSEGH+YST+DDDHY+ST+
Sbjct:  132 RQAVEFLSSEGHIYSTVDDDHYKSTD 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A1S3HW85_LINUN (replication protein A 32 kDa subunit-A-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HW85_LINUN)

HSP 1 Score: 50.8 bits (120), Expect = 1.500e-6
Identity = 19/27 (70.37%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:   40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
            R+A++FLSSEGH+YSTIDDDHY++T++
Sbjct:  137 RSAIEFLSSEGHIYSTIDDDHYKATDS 163
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: UPI0004F0E448 (replication protein A 32 kDa subunit n=1 Tax=Acanthisitta chloris TaxID=57068 RepID=UPI0004F0E448)

HSP 1 Score: 50.8 bits (120), Expect = 1.730e-6
Identity = 20/27 (74.07%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:   40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
            + AV FLSSEGH+YST+DDDHY+ST+T
Sbjct:  147 KQAVDFLSSEGHIYSTVDDDHYKSTDT 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A1V4JJB4_PATFA (Replication protein A subunit n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JJB4_PATFA)

HSP 1 Score: 51.6 bits (122), Expect = 1.760e-6
Identity = 20/27 (74.07%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
            + AV+FLSSEGH+YST+DDDHY+ST+T
Sbjct:  244 KQAVEFLSSEGHIYSTVDDDHYKSTDT 270
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A7M7NK50_STRPU (RPA_C domain-containing protein n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7NK50_STRPU)

HSP 1 Score: 51.2 bits (121), Expect = 2.500e-6
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
            R AV+FLSSEGH+YSTIDDDH++STE+
Sbjct:  258 RKAVEFLSSEGHIYSTIDDDHFKSTES 284
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A7M7NQ31_STRPU (RPA_C domain-containing protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NQ31_STRPU)

HSP 1 Score: 51.2 bits (121), Expect = 2.500e-6
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   40 RTAVQFLSSEGHLYSTIDDDHYRSTET 120
            R AV+FLSSEGH+YSTIDDDH++STE+
Sbjct:  258 RKAVEFLSSEGHIYSTIDDDHFKSTES 284
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: A0A7L0WYG2_ALELA (RFA2 protein (Fragment) n=1 Tax=Alectura lathami TaxID=81907 RepID=A0A7L0WYG2_ALELA)

HSP 1 Score: 49.7 bits (117), Expect = 2.690e-6
Identity = 19/26 (73.08%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   40 RTAVQFLSSEGHLYSTIDDDHYRSTE 117
            + AV+FLSSEGH+YST+DDDHY+ST+
Sbjct:  107 KQAVEFLSSEGHIYSTVDDDHYKSTD 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Match: UPI000528D546 (replication protein A 32 kDa subunit-like n=1 Tax=Eurypyga helias TaxID=54383 RepID=UPI000528D546)

HSP 1 Score: 49.7 bits (117), Expect = 2.690e-6
Identity = 19/26 (73.08%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   40 RTAVQFLSSEGHLYSTIDDDHYRSTE 117
            + AV+FLSSEGH+YST+DDDHY+ST+
Sbjct:  107 KQAVEFLSSEGHIYSTVDDDHYKSTD 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100490.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPM7_ECTSI1.690e-8100.00RPA_C domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A2I0LS00_COLLI1.290e-674.07Replication protein A2, 32kDa n=1 Tax=Columba livi... [more]
A0A7K4IV34_GEOCA1.420e-676.92RFA2 protein (Fragment) n=1 Tax=Geococcyx californ... [more]
A0A1S3HW85_LINUN1.500e-670.37replication protein A 32 kDa subunit-A-like n=1 Ta... [more]
UPI0004F0E4481.730e-674.07replication protein A 32 kDa subunit n=1 Tax=Acant... [more]
A0A1V4JJB4_PATFA1.760e-674.07Replication protein A subunit n=1 Tax=Patagioenas ... [more]
A0A7M7NK50_STRPU2.500e-677.78RPA_C domain-containing protein n=3 Tax=Echinacea ... [more]
A0A7M7NQ31_STRPU2.500e-677.78RPA_C domain-containing protein n=2 Tax=Strongyloc... [more]
A0A7L0WYG2_ALELA2.690e-673.08RFA2 protein (Fragment) n=1 Tax=Alectura lathami T... [more]
UPI000528D5462.690e-673.08replication protein A 32 kDa subunit-like n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100490contigEcto-sp13_S_contig100490:222..344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size123
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462503.7119126-CDS-Ecto-sp13_S_contig100490:221..3441681462503.7119126-CDS-Ecto-sp13_S_contig100490:221..344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100490 222..344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100490.75.1prot_Ecto-sp13_S_contig100490.75.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100490 222..344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100490.75.1

>prot_Ecto-sp13_S_contig100490.75.1 ID=prot_Ecto-sp13_S_contig100490.75.1|Name=mRNA_Ecto-sp13_S_contig100490.75.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
PGCPLYIACFLCCRTAVQFLSSEGHLYSTIDDDHYRSTET*
back to top

mRNA from alignment at Ecto-sp13_S_contig100490:222..344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100490.75.1 ID=mRNA_Ecto-sp13_S_contig100490.75.1|Name=mRNA_Ecto-sp13_S_contig100490.75.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100490:222..344+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGGTTGTCCTTTGTATATTGCGTGTTTTTTGTGTTGCAGGACCGCGGT
ACAGTTCCTTTCTTCGGAGGGCCACCTGTACTCAACAATCGACGACGATC
ACTACCGCTCCACAGAGACGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100490:222..344+

>mRNA_Ecto-sp13_S_contig100490.75.1 ID=mRNA_Ecto-sp13_S_contig100490.75.1|Name=mRNA_Ecto-sp13_S_contig100490.75.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100490:222..344+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGGTTGTCCTTTGTATATTGCGTGTTTTTTGTGTTGCAGGACCGCGGT
ACAGTTCCTTTCTTCGGAGGGCCACCTGTACTCAACAATCGACGACGATC
ACTACCGCTCCACAGAGACGTGA
back to top