mRNA_Ecto-sp13_S_contig100479.73.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100479.73.1
Unique NamemRNA_Ecto-sp13_S_contig100479.73.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: D7G4U4_ECTSI (Phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U4_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 9.040e-21
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS 129
            QGDKEA RGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS
Sbjct:  681 QGDKEAARGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS 723
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.840e-13
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS 129
            QGD E  +GL +SPLCDR   NL KSQCDFIDFIVRPCVT+FS
Sbjct: 1759 QGDLERGQGLQISPLCDRAQGNLAKSQCDFIDFIVRPCVTMFS 1801
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: D8LTM6_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM6_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.470e-11
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS 129
            QGD EA +G+ VSPLC R   N  KSQCDF++F+VRPC T+FS
Sbjct:  557 QGDLEAEKGVPVSPLCSREGHNQAKSQCDFVNFVVRPCATVFS 599
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: A0A7S1CCP6_9STRA (Phosphodiesterase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCP6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.330e-10
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS 129
            QGD E  RG+ +SPLCDRR+ NL KSQ  FIDF+VRP   +FS
Sbjct:  695 QGDLERQRGMEISPLCDRRNHNLSKSQLGFIDFVVRPAFALFS 737
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: A0A7S3XSN1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSN1_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 6.990e-10
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS 129
            QG +EA  GL VSPLCD+   ++PKSQC+FIDF+VRPC   F+
Sbjct:   76 QGAREARAGLPVSPLCDQAKVDIPKSQCNFIDFLVRPCFEPFA 118
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: A0A7S3XSI7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSI7_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 8.160e-10
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRR-DQNLPKSQCDFIDFIVRPCVTIFS 129
            QGD E  RG+ +SPLCDR    N  KSQCDF+DF+VRPC+  FS
Sbjct:  280 QGDAERRRGVPISPLCDRHAGGNFAKSQCDFVDFVVRPCLVPFS 323
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: A0A7S1C309_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C309_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.400e-8
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRP 111
            QGD+E   GLAVSPLCDR D NLPK+Q  FIDF+V P
Sbjct:  265 QGDRERELGLAVSPLCDRGDVNLPKAQLGFIDFVVLP 301
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: A0A7S1C4N6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4N6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.630e-8
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS 129
            QGDKE   GL +SPLCDR + +L KSQ  FI+F+VRPC   FS
Sbjct:  836 QGDKERVLGLPISPLCDRDNFDLAKSQQGFIEFVVRPCFEPFS 878
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: A0A7S3XXI8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXI8_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 6.480e-8
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS 129
            QG +E   GL +S LCDR    LPKSQCDFI+F+V+PC+  FS
Sbjct:  151 QGAREKEEGLPISFLCDRATVVLPKSQCDFINFLVKPCLGPFS 193
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BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Match: E9GVS7_DAPPU (PDEase domain-containing protein (Fragment) n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9GVS7_DAPPU)

HSP 1 Score: 50.4 bits (119), Expect = 1.150e-6
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRP 111
            QGD+E  +GL VSP+CDR++  + KSQ  FID+IV P
Sbjct:   35 QGDREREQGLDVSPMCDRQNATIEKSQVGFIDYIVHP 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100479.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4U4_ECTSI9.040e-2197.67Phosphodiesterase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835Z5P1_9STRA1.840e-1374.42Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
D8LTM6_ECTSI1.470e-1162.79Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S1CCP6_9STRA3.330e-1062.79Phosphodiesterase n=1 Tax=Bicosoecida sp. CB-2014 ... [more]
A0A7S3XSN1_HETAK6.990e-1060.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XSI7_HETAK8.160e-1061.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1C309_9STRA1.400e-870.27Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1C4N6_9STRA3.630e-860.47Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3XXI8_HETAK6.480e-858.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
E9GVS7_DAPPU1.150e-656.76PDEase domain-containing protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100479contigEcto-sp13_S_contig100479:171..299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score92.4
Seed ortholog evalue5.4e-17
Seed eggNOG ortholog2880.D7G4U4
Preferred namepde-3
Model size129
KEGG rclassRC00296
KEGG koko:K13293,ko:K13755,ko:K18437,ko:K19021
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04020,ko04022,ko04024,ko04740,ko04742,ko04924,ko04927,ko04934,ko05032,map00230,map04020,map04022,map04024,map04740,map04742,map04924,map04927,map04934,map05032
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000302,GO:0006935,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007602,GO:0007610,GO:0007635,GO:0008150,GO:0008340,GO:0009268,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010259,GO:0010446,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010752,GO:0010754,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0032501,GO:0032502,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0046677,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:1901700,GO:1902531,GO:1902532
Exons1
EggNOG free text desc.calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3688@1,KOG3688@2759
EC3.1.4.17,3.1.4.53
Cds size129
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462503.4543478-CDS-Ecto-sp13_S_contig100479:170..2991681462503.4543478-CDS-Ecto-sp13_S_contig100479:170..299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100479 171..299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100479.73.1prot_Ecto-sp13_S_contig100479.73.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100479 171..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100479.73.1

>prot_Ecto-sp13_S_contig100479.73.1 ID=prot_Ecto-sp13_S_contig100479.73.1|Name=mRNA_Ecto-sp13_S_contig100479.73.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
QGDKEATRGLAVSPLCDRRDQNLPKSQCDFIDFIVRPCVTIFS
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mRNA from alignment at Ecto-sp13_S_contig100479:171..299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100479.73.1 ID=mRNA_Ecto-sp13_S_contig100479.73.1|Name=mRNA_Ecto-sp13_S_contig100479.73.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100479:171..299- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCGACAAGGAGGCTACCCGGGGCTTGGCGGTGTCCCCGTTGTGCGA
CCGACGGGATCAAAACCTTCCGAAGAGCCAGTGCGACTTCATCGACTTTA
TTGTGCGACCTTGCGTCACCATCTTCTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100479:171..299-

>mRNA_Ecto-sp13_S_contig100479.73.1 ID=mRNA_Ecto-sp13_S_contig100479.73.1|Name=mRNA_Ecto-sp13_S_contig100479.73.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100479:171..299- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCGACAAGGAGGCTACCCGGGGCTTGGCGGTGTCCCCGTTGTGCGA
CCGACGGGATCAAAACCTTCCGAAGAGCCAGTGCGACTTCATCGACTTTA
TTGTGCGACCTTGCGTCACCATCTTCTCG
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