mRNA_Ecto-sp13_S_contig100473.72.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100473.72.1
Unique NamemRNA_Ecto-sp13_S_contig100473.72.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100473.72.1 vs. uniprot
Match: D8LLL4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLL4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.470e-21
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF 141
            LQQAAGQAAEYVKRLEQTNYALSVRVQAMG+SGASDFMGGQRPPDVF
Sbjct:  202 LQQAAGQAAEYVKRLEQTNYALSVRVQAMGNSGASDFMGGQRPPDVF 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100473.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLL4_ECTSI2.470e-2197.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100473contigEcto-sp13_S_contig100473:369..509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size141
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462503.4127505-CDS-Ecto-sp13_S_contig100473:368..5091681462503.4127505-CDS-Ecto-sp13_S_contig100473:368..509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100473 369..509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100473.72.1prot_Ecto-sp13_S_contig100473.72.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100473 369..509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100473.72.1

>prot_Ecto-sp13_S_contig100473.72.1 ID=prot_Ecto-sp13_S_contig100473.72.1|Name=mRNA_Ecto-sp13_S_contig100473.72.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
LQQAAGQAAEYVKRLEQTNYALSVRVQAMGSSGASDFMGGQRPPDVF
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mRNA from alignment at Ecto-sp13_S_contig100473:369..509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100473.72.1 ID=mRNA_Ecto-sp13_S_contig100473.72.1|Name=mRNA_Ecto-sp13_S_contig100473.72.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100473:369..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCAGCAGGCGGCGGGGCAGGCGGCGGAGTACGTGAAGCGGCTCGAGCA
GACGAACTACGCCCTCTCCGTGCGCGTGCAGGCCATGGGAAGCTCGGGGG
CGAGCGACTTCATGGGCGGCCAGCGCCCCCCGGACGTGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100473:369..509+

>mRNA_Ecto-sp13_S_contig100473.72.1 ID=mRNA_Ecto-sp13_S_contig100473.72.1|Name=mRNA_Ecto-sp13_S_contig100473.72.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100473:369..509+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCAGCAGGCGGCGGGGCAGGCGGCGGAGTACGTGAAGCGGCTCGAGCA
GACGAACTACGCCCTCTCCGTGCGCGTGCAGGCCATGGGAAGCTCGGGGG
CGAGCGACTTCATGGGCGGCCAGCGCCCCCCGGACGTGTTT
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