mRNA_Ecto-sp13_S_contig10772.698.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10772.698.1 vs. uniprot
Match: D8LHM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHM5_ECTSI) HSP 1 Score: 1254 bits (3246), Expect = 0.000e+0 Identity = 787/951 (82.75%), Postives = 810/951 (85.17%), Query Frame = 1
Query: 1 SSRHRRREVFTAQEPPVTKPVEGPDPPPWSESKLGLLCEPSEGASAAASLASIGAEHGWSSTATSAEDWENAVDIVPETNSSYCSVTADTSSGGRAGPSFESKSEEEDGEDDSSAFALSFVSAPWAVSDDEGGEQGRRARQPRCRLRANEIMLPSTAAGAKDMEAVQAARRLAALQGARRGRRGRARKTR--VRSGGGKCIVESPAKLNSKVVSILQEDGGESRRGREVGTTRSPIAIGSSNHNASAAPFKPQPELYDVWIARDFFHGKGLPTGKRVRGESEPRPPKGLKAAAAADRGSVDIPTVTPASQAAKRASEDREPPGHCEQHHKRPTAAAASVGKRCAVRYVGGPEDFTGGTASGAATWEDVQAGARSPQVAGKCRTGARSRPPEAARVPGATAAVTGGGLETGRVDNDRIEPGFNSDCRGDAVDADDDDGHGSRPVLGREAEEIVDVSGDIVTWQAEEEGXXXXXXXXXVDGREGMEDEDEEYFDYAKRFSWQTAAEVVQEAEAEAQARSHEQRQQELRAGEVRDDLQHDKDDDAVVRPEEARRQLEXXXXXXXXXXXSERARVRSDHAAAVAVGRLRAPQSVFHRMHRTPSRPEMRRSVTRGRFSPGGRKLWRQSEGLSPRTGQLCLSPRRRGGXXXXXXXX------CGGVGSGGDWIVPFSGGGALDWGEMRTTAVATRRWGSADSTSFVNRDLPTANDDTNGWGEHCNNVRENSDLGVGTLDEGNXXXXXXXXXXXXXXXXXXXXXXXSAGGYCDVGVTDRAXXXXXXXXXXXXXXXXTAVNRKXXXXXXXXXXXXXXXXXXXXXGAKVLNDEAVVKEQEGQDNELAAEQQEEQRETEECALSKSDPPHQVNGKAHPHGAGGVSCCGGAEIARGEEDHDDAAIWMEDDRGAEPSGGESACAAAKHEDRGGCAVEEDPDGPLSFAVRCLSYTVKIPLSGHS 2829
SSRHRR EVFTAQEPPVTKPVEGPDPPPWSESKLGLLCEPSEGAS ASLASIGAEHG SSTATS EDW NAVD+VPETN+S CSVT +TS GGR GPSFESK SAFALSFVSAPWAVSDDEG EQG +ARQ RCRLRANEIMLPSTAAGAK+ EAVQAARRLAALQGA+RGRRGRAR+TR VR GGG CIVESPAKLNSKVVSILQEDGGE+RRGREVG TRSPIAI SSN N S +PFKPQPELYDVWIARDFFHGKGLPTGKRVRGESEPRPPKGLKAAAAADRGSVDIPT+TPASQAAKRASEDREPP H EQHH RP AAAAS GKRCAVRYVGGPEDFTGGTASGA T E V+AGARSPQVAGK R GA R EAARVPGATAAVTG GLET RVDNDRIEP N D GDA GHG+ PVLGREAEEIVDVSGDIV WQAEE+ VDGREGMEDEDEEYFDYAKRFSWQTAAEVV+EAEA RS EQR+ ELR GEVRDD+QHD DD XXXXXXXXXXXSERARVRSDHAAAVAVGRLRAPQSVFHRMHRTPSRPEMRRSVTRGRFSPGGRKLWRQSEGL PRTGQLCLSPRRRG XXXXXXXX CGGVGSGGDWIVPFSGGGALDWGEMRTTAVATRRWGSADST+FVNRDLPTAN DTNG GEHCNNVR+NSDLGVG LDEGNXXXXXXXXXXXXXXXXXXXXXXX GYCDVG T XXXXXXXXXXXXXXXXTAV+ XXXXXXXXXXXXXXXXXXXXX L+DE VVKEQEGQ NEL AEQQEEQRETEECALSKSDPPH NGKA PHGAGGVSCC GAE ARGEEDHDDAAI M+DD AEP GGE A AAA+ E+ GG VEEDPDGPLS VRCLSYTVKIP GHS
Sbjct: 169 SSRHRRGEVFTAQEPPVTKPVEGPDPPPWSESKLGLLCEPSEGASTTASLASIGAEHGGSSTATSPEDWGNAVDMVPETNNSCCSVTTNTSRGGRTGPSFESKXXXXXXXXXXSAFALSFVSAPWAVSDDEGSEQGPQARQTRCRLRANEIMLPSTAAGAKNTEAVQAARRLAALQGAKRGRRGRARQTRMRVRGGGGHCIVESPAKLNSKVVSILQEDGGENRRGREVGITRSPIAIDSSNDNVSTSPFKPQPELYDVWIARDFFHGKGLPTGKRVRGESEPRPPKGLKAAAAADRGSVDIPTITPASQAAKRASEDREPPSHPEQHHTRPAAAAASAGKRCAVRYVGGPEDFTGGTASGAETREGVRAGARSPQVAGKWRAGACLRL-EAARVPGATAAVTGVGLETTRVDNDRIEPSLNGDGGGDAXXXXXXXGHGNGPVLGREAEEIVDVSGDIVAWQAEED-------EEEVDGREGMEDEDEEYFDYAKRFSWQTAAEVVKEAEAXXXXRSREQRRPELRTGEVRDDMQHDTDDXXXXXXXXXXXXX-XXXXXXXXXXXSERARVRSDHAAAVAVGRLRAPQSVFHRMHRTPSRPEMRRSVTRGRFSPGGRKLWRQSEGLCPRTGQLCLSPRRRGXXXXXXXXXXXXXXXCGGVGSGGDWIVPFSGGGALDWGEMRTTAVATRRWGSADSTTFVNRDLPTANGDTNGGGEHCNNVRDNSDLGVGALDEGNXXXXXXXXXXXXXXXXXXXXXXXXXXGYCDVGGTXXXXXXXXXXXXXXXXXXXTAVHXXXXXXXXXXXXXXXXXXXXXXXXXXXLHDEEVVKEQEGQHNELVAEQQEEQRETEECALSKSDPPHHANGKAKPHGAGGVSCCRGAETARGEEDHDDAAISMDDDGRAEPPGGEPAYAAAEPEETGGDGVEEDPDGPLSSTVRCLSYTVKIPWGGHS 1110
BLAST of mRNA_Ecto-sp13_S_contig10772.698.1 vs. uniprot
Match: A0A6H5KCJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ2_9PHAE) HSP 1 Score: 1197 bits (3096), Expect = 0.000e+0 Identity = 738/951 (77.60%), Postives = 765/951 (80.44%), Query Frame = 1
Query: 1 SSRHRRREVFTAQEPPVTKPVEGPDPPPWSESKLGLLCEPSEGASAAASLASIGAEHGWSSTATSAEDWENAVDIVPETNSSYCSVTADTSSGGRAGPSFESKSEEEDGEDDSSAFALSFVSAPWAVSDDEGGEQGRRARQPRCRLRANEIMLPSTAAGAKDMEAVQAARRLAALQGARRGRRGRARKTRVRSGGG-------KCIVESPAKLNSKVVSILQEDGGESRRGREVGTTRSPIAIGSSNHNASAAPFKPQPELYDVWIARDFFHGKGLPTGKRVRGESEPRPPKGLKAAAAADRGSVDIPTVTPASQAAKRASEDREPPGHCEQHHKRPTAAAASVGKRCAVRYVGGPEDFTGGTASGAATWEDVQAGARSPQVAGKCRTGARSRPPEAARVPGATAAVTGGGLETGRVDNDRIEPGFNSDCRGDAVDADDDDGHGSRPVLGREAEEIVDVSGDIVTWQAEEEGXXXXXXXXXVDGREGMEDEDEEYFDYAKRFSWQTAAEVVQEAEAEAQARSHEQRQQELRAGEVRDDLQHDKDDDAVVRPEEARRQLEXXXXXXXXXXXSERARVRSDHAAAVAVGRLRAPQSVFHRMHRTPSRPEMRRSVTRGRFSPGGRKLWRQSEGLSPRTGQLCLSPRRRGGXXXXXXXX-CGGVGSGGDWIVPFSGGGALDWGEMRTTAVATRRWGSADSTSFVNRDLPTANDDTNGWGEHCNNVRENSDLGVGTLDEGNXXXXXXXXXXXXXXXXXXXXXXXSAGGYCDVGVTDRAXXXXXXXXXXXXXXXXTAVNRKXXXXXXXXXXXXXXXXXXXXXGAKVLNDEAVVKEQEGQDNELAAEQQEEQRETEECALSKSDPPHQVNGKAHPHGAGGVSCCGGAEIARGEEDHDDAAIWMEDDRGAEPSGGESACAAAKHEDRGGCAVEEDPDGPLSFAVRCLSYTVKIPLSGHS 2829
SSRHRR EVFTAQEPPVTKPVEGPDPPPWSESKLGLLCEPSEGASAAASLASIGAEHG SS ATS EDW VD+VPETN+S CS T +TSSGGRAGP FE SAFALSFV APWAVSDDEGGEQG RARQPRCRLRANEI+LPS AAGAK+ EAVQ ARRLAALQGA+RGRRGRA CIVES KLNSKVVSILQ+DGGE+ RGREVG TRSPIAI SSN N S A FKPQPELYDVWIARDFFH KGLPTGKRVRGESEPRPPKGLKAAAAA RGSV+IPT+TPA QAAKRASEDREPPGH EQHHKRP A AASVGKRCAVRYVGGPEDFTG TASGAA+ EDV+AGARSPQVAGKCRTGAR RPPEAARVPGATAAVTG LE GRVDNDRIEPGFN D GDA D DDDDGHGS PVLGREAEEIVD+SGDIV WQAEEE VDGREGMEDEDEEYFDYAKRFSW+TAAEVV+EA XXXXXXXXXXX ARVRSDHAAAVAVGRLRAPQSVFHRMHRTPSRPEMRRSVTRGRFSPGGRKLWRQSEGLSPRTGQLCLSPRRRGG XXXXXX CGGVGSGGDWIVPF GGGALDWGEMRTTAVATRRWGSADST+FVNRDLPTAN DT+G GEHCNNVR DLGVG LD+G+XXXXXXXXXXXXXXXXXXXXXX SA Y DVG TDR XXXXXXXXXXXXXXXX AV+R GA+ LNDEAVVKE+EGQDNEL AEQQ+EQRETEECALSKSDP +NGK+HPHGAGGVSCC GAEIARGEE+HDDAAI MEDDR AEPSGGESACAAA+ EDRGG VEEDPDGPLS VR LSYTVKIPL GHS
Sbjct: 175 SSRHRRGEVFTAQEPPVTKPVEGPDPPPWSESKLGLLCEPSEGASAAASLASIGAEHGGSSAATSPEDWGFVVDMVPETNNSCCSATINTSSGGRAGPIFEXXXXXXXXXXXXSAFALSFVRAPWAVSDDEGGEQGPRARQPRCRLRANEIVLPSPAAGAKNTEAVQVARRLAALQGAKRGRRGRAXXXXXXXXXXXXXXXXXNCIVESHGKLNSKVVSILQQDGGENCRGREVGITRSPIAIDSSNDNVSTALFKPQPELYDVWIARDFFHSKGLPTGKRVRGESEPRPPKGLKAAAAAGRGSVNIPTITPAFQAAKRASEDREPPGHREQHHKRPAATAASVGKRCAVRYVGGPEDFTGRTASGAASREDVRAGARSPQVAGKCRTGARLRPPEAARVPGATAAVTGVRLEIGRVDNDRIEPGFNGDSGGDASDTDDDDGHGSGPVLGREAEEIVDISGDIVAWQAEEE---------EVDGREGMEDEDEEYFDYAKRFSWKTAAEVVKEAXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVRSDHAAAVAVGRLRAPQSVFHRMHRTPSRPEMRRSVTRGRFSPGGRKLWRQSEGLSPRTGQLCLSPRRRGGGGXXXXXXXCGGVGSGGDWIVPFFGGGALDWGEMRTTAVATRRWGSADSTTFVNRDLPTANGDTHGGGEHCNNVR---DLGVGALDDGSXXXXXXXXXXXXXXXXXXXXXXASA--YGDVGGTDRXXXXXXXXXXXXXXXXXXAVHRNTRSVDGDTSVGDHCDAGGSDRGARALNDEAVVKEEEGQDNELLAEQQQEQRETEECALSKSDPSRHINGKSHPHGAGGVSCCRGAEIARGEENHDDAAISMEDDRRAEPSGGESACAAAEREDRGGDGVEEDPDGPLSSTVRYLSYTVKIPLGGHS 1103 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10772.698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10772.698.1 >prot_Ecto-sp13_S_contig10772.698.1 ID=prot_Ecto-sp13_S_contig10772.698.1|Name=mRNA_Ecto-sp13_S_contig10772.698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=793bp MLPSTAAGAKDMEAVQAARRLAALQGARRGRRGRARKTRVRSGGGKCIVEback to top mRNA from alignment at Ecto-sp13_S_contig10772:2..3343+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10772.698.1 ID=mRNA_Ecto-sp13_S_contig10772.698.1|Name=mRNA_Ecto-sp13_S_contig10772.698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10772:2..3343+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10772:2..3343+ >mRNA_Ecto-sp13_S_contig10772.698.1 ID=mRNA_Ecto-sp13_S_contig10772.698.1|Name=mRNA_Ecto-sp13_S_contig10772.698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10772:2..3343+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |