mRNA_Ecto-sp13_S_contig100462.70.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig100462.70.1
Unique NamemRNA_Ecto-sp13_S_contig100462.70.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A6H5JH56_9PHAE (Pyr_redox_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH56_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.930e-28
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEEVGRRCW 159
            AIGNCFERANLPTVTEEQR+AALTFAIVGAGPTGVECCAELRDFIEEVGRRCW
Sbjct:  271 AIGNCFERANLPTVTEEQRIAALTFAIVGAGPTGVECCAELRDFIEEVGRRCW 323
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A6S8C9L8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8C9L8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.390e-16
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    4 IGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEEVGRR 153
            +GNCFERANLPT T+E R  AL+F IVGAGPTGVE C+ELRDF++E   R
Sbjct:  251 VGNCFERANLPTATDEDRTTALSFVIVGAGPTGVEFCSELRDFLQEEASR 300
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A835YV14_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV14_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.040e-15
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEE 141
            AIGNCFERANLPT+++EQ+ A LTF +VG GPTGVE  AELRDFIE+
Sbjct:  271 AIGNCFERANLPTLSDEQKQAVLTFVVVGGGPTGVELTAELRDFIEQ 317
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A7S0H9Y9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H9Y9_9CRYP)

HSP 1 Score: 75.9 bits (185), Expect = 1.060e-14
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEE 141
            AIGN FERANLP +TEE+R+  LTF IVGAGPTGVE  AEL+DFIEE
Sbjct:  336 AIGNTFERANLPDMTEEERIRTLTFVIVGAGPTGVELTAELKDFIEE 382
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A7S4NPS0_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NPS0_GUITH)

HSP 1 Score: 75.9 bits (185), Expect = 1.060e-14
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEE 141
            AIGN FERANLP +TEE+R+  LTF IVGAGPTGVE  AEL+DFIEE
Sbjct:  348 AIGNTFERANLPDMTEEERIRTLTFVIVGAGPTGVELTAELKDFIEE 394
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A0G4FMA0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FMA0_9ALVE)

HSP 1 Score: 75.1 bits (183), Expect = 1.980e-14
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEEVGRR 153
            AIGNCFE+ANLP ++EEQR   LTF IVGAGPTGVE   ELRDF+E+ G R
Sbjct:  317 AIGNCFEKANLPGLSEEQRRNLLTFVIVGAGPTGVELTGELRDFVEKEGPR 367
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A1E7FVG3_9STRA (Pyr_redox_2 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVG3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.700e-14
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEEVG 147
            AI NCFERANLP +++E+R+  LTFA++GAGPTG+E  AELRDF+EE G
Sbjct:  200 AIVNCFERANLPGLSDEERINILTFAVIGAGPTGIEFAAELRDFVEEDG 248
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A7S2WJC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WJC1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.700e-14
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEEVG 147
            A+ NCFERANLP +T+E+R A LTFA++GAGPTGVE  +ELRDF+E+ G
Sbjct:  291 ALVNCFERANLPNLTDEKREAILTFAVIGAGPTGVEFASELRDFVEQDG 339
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A448YXW6_9STRA (Pyr_redox_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXW6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.050e-14
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEEVG 147
            AI NCFERANLP ++EE R+  LTFAI+GAGPTG+E  AELRDF+E+ G
Sbjct:  262 AIVNCFERANLPGLSEEDRINNLTFAIIGAGPTGIEFAAELRDFVEQDG 310
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BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Match: A0A1Z5JW51_FISSO (NADH dehydrogenase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW51_FISSO)

HSP 1 Score: 73.6 bits (179), Expect = 6.900e-14
Identity = 33/56 (58.93%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEEVGRRCWYRV 168
            +I NCFERANLP +T+E+R   LTFA++GAGPTG+E  AELRDF+E+ G + + R+
Sbjct:  309 SIVNCFERANLPGLTDEEREQNLTFAVIGAGPTGIEFAAELRDFVEQDGPKYYPRL 364
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100462.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH56_9PHAE4.930e-2898.11Pyr_redox_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A6S8C9L8_9STRA6.390e-1670.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A835YV14_9STRA3.040e-1574.47NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S0H9Y9_9CRYP1.060e-1476.60Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S4NPS0_GUITH1.060e-1476.60Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A0G4FMA0_9ALVE1.980e-1470.59Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A1E7FVG3_9STRA2.700e-1467.35Pyr_redox_2 domain-containing protein n=1 Tax=Frag... [more]
A0A7S2WJC1_9STRA3.700e-1467.35Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A448YXW6_9STRA5.050e-1469.39Pyr_redox_2 domain-containing protein n=1 Tax=Pseu... [more]
A0A1Z5JW51_FISSO6.900e-1458.93NADH dehydrogenase n=2 Tax=Fistulifera solaris Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100462contigEcto-sp13_S_contig100462:2..169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score74.3
Seed ortholog evalue2e-11
Seed eggNOG ortholog2850.Phatr26970
Model size168
KEGG koko:K03885,ko:K17871
KEGG Pathwayko00190,map00190
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Pyridine nucleotide-disulphide oxidoreductase
EggNOG OGs2XB5Y@2836,COG1252@1,KOG2495@2759
EC1.6.5.9,1.6.99.3
Cds size168
COG Functional cat.C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462503.295048-CDS-Ecto-sp13_S_contig100462:1..1691681462503.295048-CDS-Ecto-sp13_S_contig100462:1..169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig100462 2..169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100462.70.1prot_Ecto-sp13_S_contig100462.70.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig100462 2..169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig100462.70.1

>prot_Ecto-sp13_S_contig100462.70.1 ID=prot_Ecto-sp13_S_contig100462.70.1|Name=mRNA_Ecto-sp13_S_contig100462.70.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
AIGNCFERANLPTVTEEQRVAALTFAIVGAGPTGVECCAELRDFIEEVGR
RCWYRV
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mRNA from alignment at Ecto-sp13_S_contig100462:2..169-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig100462.70.1 ID=mRNA_Ecto-sp13_S_contig100462.70.1|Name=mRNA_Ecto-sp13_S_contig100462.70.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100462:2..169- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATCGGCAACTGCTTCGAGCGAGCCAACCTGCCGACGGTTACGGAGGA
GCAGAGGGTCGCGGCCCTCACCTTCGCCATCGTGGGGGCCGGGCCCACCG
GAGTGGAGTGCTGCGCAGAGCTCAGAGATTTCATCGAAGAGGTGGGACGG
CGGTGTTGGTACCGTGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100462:2..169-

>mRNA_Ecto-sp13_S_contig100462.70.1 ID=mRNA_Ecto-sp13_S_contig100462.70.1|Name=mRNA_Ecto-sp13_S_contig100462.70.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100462:2..169- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATCGGCAACTGCTTCGAGCGAGCCAACCTGCCGACGGTTACGGAGGA
GCAGAGGGTCGCGGCCCTCACCTTCGCCATCGTGGGGGCCGGGCCCACCG
GAGTGGAGTGCTGCGCAGAGCTCAGAGATTTCATCGAAGAGGTGGGACGG
CGGTGTTGGTACCGTGTA
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