mRNA_Ecto-sp13_S_contig10753.684.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10753.684.1
Unique NamemRNA_Ecto-sp13_S_contig10753.684.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: D8LBJ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBJ3_ECTSI)

HSP 1 Score: 410 bits (1053), Expect = 4.700e-138
Identity = 308/330 (93.33%), Postives = 311/330 (94.24%), Query Frame = 3 
Query:   27 MGVGASHQTKLDREFGDIGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDMSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGVKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            MGVGASHQTKL+REFGDIGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREED SGG    XXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PRRSSTWSKMSSFKGSFGNG+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GESAAGVDG GG ARGNRRTSDGANESG +TWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD
Sbjct:    1 MGVGASHQTKLEREFGDIGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDTSGGXXXXXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PRRSSTWSKMSSFKGSFGNGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGESAAGVDGGGGNARGNRRTSDGANESGGETWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 328
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BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: A0A835Z200_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z200_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.200e-39
Identity = 106/335 (31.64%), Postives = 144/335 (42.99%), Query Frame = 3 
Query:   27 MGVGASHQTKLDREFGDIGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREED-----MSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGVKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            MG G+S  +KL+++ G     +  ER++GLENFGNTCYCNSV+QALYFC PLR  L     ++     M+ GSS                 ++L +LAELF+ I+N KR SG +AP  F++TLRE NELFRGN QQDAHEF+NF++N+MAD+++                                                           +MS+ K                                                      G+ AA                       + TW+H +FQGVLTN+TKC+CCETV++RDEPF+D
Sbjct:    1 MGTGSSSPSKLEQDLGYTEPVEAGERYYGLENFGNTCYCNSVMQALYFCGPLRTELLARHTQNSSATVMATGSS------------QYPAGSLLYQLAELFAVITNTKRLSGRVAPQAFMQTLRETNELFRGNMQQDAHEFYNFIINDMADTLL-----------------------------------------------------------RMSADKS-----------------------------------------------------GDQAA----------------------PKTTWIHDLFQGVLTNETKCICCETVTHRDEPFVD 189
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BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: A0A3B6IVM4_WHEAT (USP domain-containing protein n=2 Tax=Triticum TaxID=4564 RepID=A0A3B6IVM4_WHEAT)

HSP 1 Score: 135 bits (339), Expect = 4.940e-34
Identity = 94/306 (30.72%), Postives = 124/306 (40.52%), Query Frame = 3 
Query:   99 ERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDMSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGVKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            ER+FGLENFGNTCYCNSVLQALYFC P R  L +    + S  S G+              + +L+ LA+LFS ISNQK+++G +AP  F++ L+++NELFR    QDAHEF NF+LNE+ D +    K  +E                                           P+ SS                                                                                     G+++  E TWVH+ FQG+LTNQTKCL CETV++RDE F+D
Sbjct:   20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSA-SDGE--------------ENMLTCLADLFSQISNQKKKTGVIAPKRFIQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKECKANKET------------------------------------------PQNSSXXXXXXXXX-----------------------------------------------------------------------XXXXXGSHKEPETTWVHKCFQGILTNQTKCLRCETVTDRDETFLD 197
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BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: B9SZ50_RICCO (Ubiquitin carboxyl-terminal hydrolase, putative n=4 Tax=rosids TaxID=71275 RepID=B9SZ50_RICCO)

HSP 1 Score: 137 bits (345), Expect = 7.890e-34
Identity = 100/323 (30.96%), Postives = 138/323 (42.72%), Query Frame = 3 
Query:   51 TKLDREFGD-IGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDMSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGVKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            +KL++  GD   +G   ER+FGLENFGNTCYCNSVLQALYFC P R  L +    + SGG + +                +L+ LA+LF+ IS+QK+++G +AP  F++ L+++NELFR    QDAHEF NF+LNE+ D       L +EA   +                                      P  SS+  K+        NG KN                                                                 ++G ++    TWVH+ FQG+LTN+T+CL CETV+ RDE F D
Sbjct:    6 SKLEKALGDQFPEG---ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSGGDAEE---------------NLLTCLADLFTQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDI------LEKEAQAAKSD------------------------------------PETSSSPEKIP-------NGPKNGQ---------------------------------------------------------------ANGVSKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFD 198
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BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: A0A388KQF3_CHABU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KQF3_CHABU)

HSP 1 Score: 139 bits (350), Expect = 2.860e-33
Identity = 126/334 (37.72%), Postives = 161/334 (48.20%), Query Frame = 3 
Query:   27 MGVGASHQTKLDREFGDIGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDMSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMS--SFKGSFGNG-VKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAA-GVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            MG  +S   K   EF +       ER+FGLENFGNTCYCNSVLQALYFC P R HL +   +   G    D              + +L+ LA+LF  I++QKR++G +AP  F++ +++ NELFR    QDAHEF NF+LNE+AD ++AR     EA  +                                       P  SS+ S  +  + + S  NG +  +   XXXXXXXXXXXXXX                      S  G   SAA G+       R N     G +     TWVH IFQG LTN+TKCLCCETV+ RDE F+D
Sbjct:  123 MGTSSSRLEKALGEFPEC------ERYFGLENFGNTCYCNSVLQALYFCVPFREHLLEYFGK-CKGFPEAD--------------ENLLTCLADLFGQINSQKRKTGVIAPKRFVQRVKKENELFRSYMHQDAHEFLNFLLNELAD-ILAR-----EAKGISS-----------------------LSGNGTNSANGGFTPGTSSSASSRTGGANQPSVNNGRIPGSGGSXXXXXXXXXXXXXXGIGGKGLHISTSQSQLQFQSNVSGAGAASSAANGLXXXXXXXRPN-----GMSGGPVVTWVHEIFQGTLTNETKCLCCETVTARDETFLD 401
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BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: A0A1J7IHD9_LUPAN (USP domain-containing protein n=10 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A1J7IHD9_LUPAN)

HSP 1 Score: 135 bits (340), Expect = 4.140e-33
Identity = 101/323 (31.27%), Postives = 135/323 (41.80%), Query Frame = 3 
Query:   51 TKLDREFGD-IGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDMSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGVKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            +KL++  GD   +G   ER+FGLENFGNTCYCNSVLQALYFC P R  L +    + S G   +                +L+ LA+LFS IS+QK+++G +AP  F++ LR++NE+FR    QDAHEF NF+LNE+ D       L +EA T                                             T  +MS       NG KN                                                                 ++GA +    TWVH+ FQG+LTN+T+CL CETV+ RDE F+D
Sbjct:    6 SKLEKALGDQFPEG---ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKSIGDVEE---------------NLLTCLADLFSQISSQKKKTGVIAPKRFVQRLRKQNEIFRSYMHQDAHEFLNFLLNELVDL------LEKEAQT-------------------------------------------EKTDQEMSPPSEKAANGPKNGL---------------------------------------------------------------ANGAQKEHLVTWVHKNFQGILTNETRCLQCETVTARDETFLD 198
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BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: A0A498KP30_MALDO (Ubiquitin carboxyl-terminal hydrolase n=11 Tax=Pentapetalae TaxID=1437201 RepID=A0A498KP30_MALDO)

HSP 1 Score: 136 bits (342), Expect = 4.170e-33
Identity = 101/323 (31.27%), Postives = 138/323 (42.72%), Query Frame = 3 
Query:   51 TKLDREFGD-IGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDMSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGVKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            +KL++  GD   +G   ER+FGLENFGNTCYCNSVLQALYFC P R  L +    + S G + +                +L+ LA+LF+ IS+QK+++G +AP  F++ L+++NELFR    QDAHEF NF+LNE+ D +    K  + A + QE                                        SS   KM       GNG KN                                                                 ++G ++    TWVH+ FQG+LTN+T+CL CETV+ RDE F D
Sbjct:    6 SKLEKALGDQFPEG---ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYSSNKSAGDAEE---------------NLLTCLADLFTQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDIL---EKEAQAAKSDQE---------------------------------------TSSPPEKM-------GNGPKNVQ---------------------------------------------------------------ANGTHKDPLVTWVHKNFQGILTNETRCLRCETVTARDETFFD 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: A0A822XS89_NELNU (USP domain-containing protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A822XS89_NELNU)

HSP 1 Score: 131 bits (329), Expect = 9.100e-33
Identity = 96/323 (29.72%), Postives = 139/323 (43.03%), Query Frame = 3 
Query:   51 TKLDREFGD-IGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDMSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGVKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            +KL++  GD   +G   ER+FGLENFGNTCYCNSVLQALYFC P R  L +    + + G + +                +L+ LA+LF+ IS+QK+++G +AP  F++ ++++NELFR    QDAHEF NF+LNE+ D       L +E+   +                                      P+ SS   K +       NG+K+A                                                                ++G  +    TWVH+ FQG+LTN+T+CL CETV+ RDE F+D
Sbjct:    6 SKLEKALGDQFPEG---ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYSNNKNQGDAEE---------------NLLTCLADLFTQISSQKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDI------LEKESHAARSS------------------------------------PQTSSPSEKTA-------NGLKSAQ---------------------------------------------------------------ANGFQKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFLD 198
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BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: A0A7I8IZH4_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IZH4_SPIIN)

HSP 1 Score: 133 bits (334), Expect = 1.370e-32
Identity = 95/323 (29.41%), Postives = 136/323 (42.11%), Query Frame = 3 
Query:   51 TKLDREFGD-IGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDMSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGVKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            +KL++  G+   +G   ER+FGLENFGNTCYCNSVLQALYFC P R  L +    + S G + D                +L+ LA+LFS IS+QK+++G +AP  F++ ++++NELFR    QDAHEF NF+LNE+ D +    K  + +                                          P  SS+  K +       NG + +                                                                ++G  E    TWVH+ FQG+LTN+T+CL CETV+ R+E F+D
Sbjct:    6 SKLEKALGEQFPEG---ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYASNKSAGDAED---------------NLLTCLADLFSQISSQKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDILEKESKASKAS------------------------------------------PETSSSSEKTA-------NGARTSP---------------------------------------------------------------ANGVKEEPLVTWVHKNFQGILTNETRCLRCETVTAREETFLD 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Match: A0A1Y1HV22_KLENI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HV22_KLENI)

HSP 1 Score: 134 bits (338), Expect = 1.380e-32
Identity = 113/323 (34.98%), Postives = 150/323 (46.44%), Query Frame = 3 
Query:   51 TKLDREFGD-IGDGDGQERFFGLENFGNTCYCNSVLQALYFCEPLRHHLAQVREEDMSGGSSGDXXXXXXXXXXXXSGKTVLSELAELFSSISNQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVARRKLREEAATVQEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRSSTWSKMSSFKGSFGNGVKNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTWVHRIFQGVLTNQTKCLCCETVSNRDEPFMD 1016
            +KL++  G+   +G   E +FGLENFGNTCYCNSVLQALYFC P R  L +   +        D              +T+LS LA+LFS IS QK+++G +AP  F++ L+++NELFR    QDAHEF NF+LNE+A+++      +EE A                                         PR S   +  +S  G  G G +     XXXXXXXXXXXXXX                                                 GA     +TWVH IFQG++TN+T+CLCCET+++RDE F D
Sbjct:    6 SKLEKALGEAFPEG---EHYFGLENFGNTCYCNSVLQALYFCAPFREKLLKYAAKIPKPVPEPD--------------ETLLSSLADLFSQISTQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELAENLE-----KEEKA-----------------------------------------PRESEAPTPSTS--GGHGEGEEFGKANXXXXXXXXXXXXXX-----------------------------------------------KSGAQGRQAKTWVHEIFQGLVTNETRCLCCETLTSRDETFFD 216
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10753.684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBJ3_ECTSI4.700e-13893.33Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ecto... [more]
A0A835Z200_9STRA1.200e-3931.64Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A3B6IVM4_WHEAT4.940e-3430.72USP domain-containing protein n=2 Tax=Triticum Tax... [more]
B9SZ50_RICCO7.890e-3430.96Ubiquitin carboxyl-terminal hydrolase, putative n=... [more]
A0A388KQF3_CHABU2.860e-3337.72Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Char... [more]
A0A1J7IHD9_LUPAN4.140e-3331.27USP domain-containing protein n=10 Tax=50 kb inver... [more]
A0A498KP30_MALDO4.170e-3331.27Ubiquitin carboxyl-terminal hydrolase n=11 Tax=Pen... [more]
A0A822XS89_NELNU9.100e-3329.72USP domain-containing protein n=3 Tax=Mesangiosper... [more]
A0A7I8IZH4_SPIIN1.370e-3229.41Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A1Y1HV22_KLENI1.380e-3234.98Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Kleb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10753contigEcto-sp13_S_contig10753:3082..5701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score410.6
Seed ortholog evalue6.9e-112
Seed eggNOG ortholog2880.D8LBJ3
Preferred nameUSP46
Model size1016
KEGG koko:K11842,ko:K11872
Hectar predicted targeting categoryother localisation
GOsGO:0000578,GO:0001662,GO:0002209,GO:0002682,GO:0002684,GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0007154,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0007610,GO:0007631,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008343,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009636,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010469,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010992,GO:0010995,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019783,GO:0019941,GO:0022411,GO:0022898,GO:0023051,GO:0023056,GO:0023057,GO:0030163,GO:0030534,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0031982,GO:0032228,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033555,GO:0034762,GO:0034765,GO:0035254,GO:0035255,GO:0035282,GO:0035871,GO:0036211,GO:0036459,GO:0036477,GO:0040012,GO:0040017,GO:0042221,GO:0042493,GO:0042592,GO:0042596,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043624,GO:0043632,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045013,GO:0045471,GO:0045746,GO:0045892,GO:0045934,GO:0045990,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048520,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050795,GO:0050804,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050896,GO:0051049,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051261,GO:0051603,GO:0051716,GO:0060004,GO:0060013,GO:0060255,GO:0061984,GO:0061985,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071108,GO:0071496,GO:0071704,GO:0071840,GO:0071947,GO:0080090,GO:0090325,GO:0090326,GO:0097305,GO:0097458,GO:0097708,GO:0098657,GO:0099177,GO:0099601,GO:0101005,GO:0140096,GO:1900449,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902679,GO:1903506,GO:1903507,GO:1904062,GO:2000112,GO:2000113,GO:2000311,GO:2001141,GO:2001257
Exons4
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1864@1,KOG1864@2759
EC3.4.19.12
Cds size990
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462552.4355683-UTR-Ecto-sp13_S_contig10753:3081..31071681462552.4355683-UTR-Ecto-sp13_S_contig10753:3081..3107Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10753 3082..3107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462552.4557905-CDS-Ecto-sp13_S_contig10753:3107..32391681462552.4557905-CDS-Ecto-sp13_S_contig10753:3107..3239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10753 3108..3239 +
1681462552.4662874-CDS-Ecto-sp13_S_contig10753:3949..42101681462552.4662874-CDS-Ecto-sp13_S_contig10753:3949..4210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10753 3950..4210 +
1681462552.4782865-CDS-Ecto-sp13_S_contig10753:4690..52571681462552.4782865-CDS-Ecto-sp13_S_contig10753:4690..5257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10753 4691..5257 +
1681462552.489107-CDS-Ecto-sp13_S_contig10753:5671..57011681462552.489107-CDS-Ecto-sp13_S_contig10753:5671..5701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10753 5672..5701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10753.684.1prot_Ecto-sp13_S_contig10753.684.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10753 3108..5701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10753.684.1

>prot_Ecto-sp13_S_contig10753.684.1 ID=prot_Ecto-sp13_S_contig10753.684.1|Name=mRNA_Ecto-sp13_S_contig10753.684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=330bp
MGVGASHQTKLDREFGDIGDGDGQERFFGLENFGNTCYCNSVLQALYFCE
PLRHHLAQVREEDMSGGSSGDGSSSGGGGGSGGSGKTVLSELAELFSSIS
NQKRRSGHLAPTEFLRTLRERNELFRGNRQQDAHEFFNFVLNEMADSVVA
RRKLREEAATVQEHKQRFQQNGSHHHRQSHGSSGNTQTSSSQQQQQQQQD
PRRSSTWSKMSSFKGSFGNGVKNASQPASAEGATAAATPSVAPAADCTAP
SAAVGGHAGGMSGSDTGGGESAAGVDGVGGAARGNRRTSDGANESGEQTW
VHRIFQGVLTNQTKCLCCETVSNRDEPFMD
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mRNA from alignment at Ecto-sp13_S_contig10753:3082..5701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10753.684.1 ID=mRNA_Ecto-sp13_S_contig10753.684.1|Name=mRNA_Ecto-sp13_S_contig10753.684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10753:3082..5701+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCCTACAGGCACCTCCACGCACTCATGGGTGTCGGTGCCTCCCATCAA
ACAAAGCTCGACCGTGAGTTCGGAGACATTGGAGATGGTGATGGACAGGA
AAGGTTCTTCGGCCTCGAGAACTTCGGCAATACCTGCTACTGCAACTCTG
TGCTGCAGGTACGAGACTGCTGCTGCTGTACTTGTACTGCTGTTCGGATT
TTGTAACAGTATCCCTTCTTAGGTAGAGCGCACGCACTACCAGCCAAGGG
AGTCTGGCTAAAGGCGCATAGTGTGCTCATGACGCCCGCACGTTGACGGG
TGTACGTCAGCAGTACCCAAAGGCGTCAGAGAGCAGAGTCACAAACATTC
CGCACCTACAAATGTACATACCTGGTGTGACGTGATACCGGCACCTGAGC
CAACGTCCAGGACGCGTTTCGTACACAGCAGGATTGGCAGCGATTTGACT
TCTCTCTGGCGCACCTGCCTTACTTCGCGCTCCCGCCGACTGATCGGGTT
AAGGACACTCATGATTGGGTTACCAACGGCGCATCTTTCCCTCTCTCGCT
GGGTCGTTCCTCACACCAGTACTTCGGTGATCCTCGACCGCCCTAGGCAT
ATCTACAGAAAGGGAAAGTTGCCTCGGTACTCAACCTTCGCTTCCACCGC
ACGTAAAAGGGACTGCTGTATCTCAACAGTACAACAACAATAACACTTGC
TCTACACGCCTGGTTCGAACCATTCTCGTGTTCGTCATCAAAGACACTGC
TCTTGCCTGCGAATGTTATGTTTGGCTTCAAGAGACATGTTGGCGTCGGG
GCTTTCACCCTCACACTTCACACACCTCTCGTCCTCGGTCTCCGCCGTGC
CGACCTACTGTCTCAAAGGCGCTCTACTTTTGCGAGCCGTTGCGACACCA
TCTCGCGCAAGTACGAGAGGAAGACATGAGTGGCGGCAGCAGCGGAGACG
GCAGTAGTAGTGGCGGGGGTGGGGGAAGCGGGGGCAGCGGCAAAACCGTT
CTGTCGGAGTTGGCGGAGCTGTTCTCGTCCATCTCCAACCAGAAGCGGCG
GTCTGGCCACCTGGCGCCGACGGAATTCCTCCGCACCCTGCGGGAACGCA
ACGAGCTCTTCCGTGGGAACAGGCAACAGGTGCGTGAGGAGGTGACTCTA
TCAAATCAGAGGGGCGCCTGGTTTAACTGTTGCTACTGCTGTGTCGGTAT
CGGCACAAGGTTATCTACCTCCGGTTTTGGGGGAGTTGCAGGAGAGTGAA
ATAAATGGGCGACGGGGGGGGGAAGGGTTGACCGCCGGTCGAGGCAGATC
CCGCCATCCTTTCATCCTTAAATGCTGATCTTGTCATTGAACAGCTCCTG
TATGCATAGGATGCGGCGGGTTTCTCGACGCAGCGCCGATCAGAGCTTTC
GAGTTTATTTCTATGAGCCACACTTGCAGCGGGTCGTATGCCCAAGTCTA
GACAAATATTTGAACGTAGTATACGCATGCGTCACGTAGAACGCGCGGTT
CGCTGAAGCTAGGGCTGTTGTGGTCACGTTCCATGCAACGGTTCCCAGCA
TCCCCGCCTTGACTGAACGAAAACGTTGAGATACATTTCCTTGCTTGCGT
GCTTTCTAGGATGCGCACGAGTTCTTCAACTTCGTGCTGAACGAGATGGC
GGATAGTGTGGTGGCTAGGAGGAAGCTGCGGGAGGAGGCGGCCACCGTCC
AGGAGCACAAGCAGCGCTTCCAACAAAACGGAAGCCATCACCACCGCCAG
TCGCACGGCAGCAGCGGCAACACCCAGACGAGTTCTTCCCAGCAGCAGCA
GCAGCAGCAGCAGGATCCGCGACGGTCTTCCACCTGGTCCAAGATGTCCT
CCTTCAAGGGCAGCTTCGGGAACGGAGTTAAGAACGCCTCGCAGCCGGCT
TCTGCGGAGGGAGCGACCGCAGCGGCGACGCCATCGGTAGCACCGGCAGC
AGATTGCACGGCTCCATCGGCCGCGGTAGGGGGGCACGCGGGCGGGATGT
CGGGCAGCGACACCGGGGGGGGGGAGTCGGCGGCGGGGGTTGATGGTGTT
GGCGGCGCCGCGCGTGGCAACCGGAGAACAAGCGATGGGGCTAACGAATC
TGGCGAGCAGACGTGGGTGCATCGGATTTTTCAGGGGGTTCTCACGAACC
AGACCAAGTGCCTCTGTTGCGAGACGGTGCGTTTGTTTGTCTGGAGACTC
TGTGCTATCACTTCCCTTCGCTACGACGGCGTATGTTTTTGGTGCGGCGA
GATAACACGTCCCGAACTCTTGCCCAGTGTCAACGAAGCGAAACTGGGTT
CATGTTTCCCTCTGGACAAGAAGTCTGAGGTTTCGATTTGCTTCCTGCTG
GGGGTTTGATGGCCTTACCGTTGGGGGATAGTTTTGATCGCCATGCCGGA
TCGTACAACTGCTTAGGCTTTTTGCCACAAATAATGAACTCAACTGCTCT
GTGTGACTATTCCAGCCCTTTTTTGTTGTCGTGCTAGTGACAATAACGCA
CAAAGCGCCTAGCATGTATCTACCGCTGACCCTTGCAATCTGAAATTAAC
GCCGAGAGTTCACCCGCCCACCCCGCTCGGTCGGTCGCAGGTGAGCAATC
GAGACGAGCCTTTCATGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10753:3082..5701+

>mRNA_Ecto-sp13_S_contig10753.684.1 ID=mRNA_Ecto-sp13_S_contig10753.684.1|Name=mRNA_Ecto-sp13_S_contig10753.684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10753:3082..5701+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGTCGGTGCCTCCCATCAAACAAAGCTCGACCGTGAGTTCGGAGA
CATTGGAGATGGTGATGGACAGGAAAGGTTCTTCGGCCTCGAGAACTTCG
GCAATACCTGCTACTGCAACTCTGTGCTGCAGGCGCTCTACTTTTGCGAG
CCGTTGCGACACCATCTCGCGCAAGTACGAGAGGAAGACATGAGTGGCGG
CAGCAGCGGAGACGGCAGTAGTAGTGGCGGGGGTGGGGGAAGCGGGGGCA
GCGGCAAAACCGTTCTGTCGGAGTTGGCGGAGCTGTTCTCGTCCATCTCC
AACCAGAAGCGGCGGTCTGGCCACCTGGCGCCGACGGAATTCCTCCGCAC
CCTGCGGGAACGCAACGAGCTCTTCCGTGGGAACAGGCAACAGGATGCGC
ACGAGTTCTTCAACTTCGTGCTGAACGAGATGGCGGATAGTGTGGTGGCT
AGGAGGAAGCTGCGGGAGGAGGCGGCCACCGTCCAGGAGCACAAGCAGCG
CTTCCAACAAAACGGAAGCCATCACCACCGCCAGTCGCACGGCAGCAGCG
GCAACACCCAGACGAGTTCTTCCCAGCAGCAGCAGCAGCAGCAGCAGGAT
CCGCGACGGTCTTCCACCTGGTCCAAGATGTCCTCCTTCAAGGGCAGCTT
CGGGAACGGAGTTAAGAACGCCTCGCAGCCGGCTTCTGCGGAGGGAGCGA
CCGCAGCGGCGACGCCATCGGTAGCACCGGCAGCAGATTGCACGGCTCCA
TCGGCCGCGGTAGGGGGGCACGCGGGCGGGATGTCGGGCAGCGACACCGG
GGGGGGGGAGTCGGCGGCGGGGGTTGATGGTGTTGGCGGCGCCGCGCGTG
GCAACCGGAGAACAAGCGATGGGGCTAACGAATCTGGCGAGCAGACGTGG
GTGCATCGGATTTTTCAGGGGGTTCTCACGAACCAGACCAAGTGCCTCTG
TTGCGAGACGGTGAGCAATCGAGACGAGCCTTTCATGGAC
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