mRNA_Ecto-sp13_S_contig10725.667.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10725.667.1
Unique NamemRNA_Ecto-sp13_S_contig10725.667.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: D7FVJ5_ECTSI (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ5_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 9.750e-139
Identity = 253/313 (80.83%), Postives = 257/313 (82.11%), Query Frame = 1
Query:    1 VGSTTKICNLALQQARMVAQPYYSEGINSGPPLLPGEEEXXXXXXXXXXXXXXXXXXXXXXXXXALNDAFVVDLLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRLEGVSTRARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTLPPRRESREADDGGHVGNGDPTAAPTAATTRVGGVAIATCCHHVCNWRDYVGRDFLMQQ 939
            + S  KICNLALQQARMVAQPYYSEGINSGPPLLPGEE XXXXXXXXXXXXXXXXXXXXXXXXX L+DAFVVDLLSRV+AAHR LVGEIPTEVLDPPEVQALHR                                    GLVGP  AG       NGPSVLHVEMGAGKGTLGQSIATAFPGS VTMVERSSVRRKAENRLEGVSTRARIDIRDL MGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTLPPR ESR+ADDGGHVGNGDPTAAP AATTRVGGVAIATCCHHVCNWRDYVGRDFL QQ
Sbjct:   95 LSSHVKICNLALQQARMVAQPYYSEGINSGPPLLPGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDAFVVDLLSRVEAAHRDLVGEIPTEVLDPPEVQALHR------------------------------------GLVGP--AGGDNGHGENGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLNMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTLPPRPESRDADDGGHVGNGDPTAAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLTQQ 369          
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: A0A6H5KUX2_9PHAE (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX2_9PHAE)

HSP 1 Score: 397 bits (1020), Expect = 3.590e-131
Identity = 240/364 (65.93%), Postives = 245/364 (67.31%), Query Frame = 1
Query:    1 VGSTTKICNLALQQARMVAQPYYSEGINSGPPLLPGEEEXXXXXXXXXXXXXXXXXXXXXXXXXALNDAFVVDLLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRLEGVSTRARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALR---------------------------------------------------AMLTLPPRRESREADDGGHVGNGDPTAAPTAATTRVGGVAIATCCHHVCNWRDYVGRDFLMQQ 939
            VGSTTK+CNLALQQARMV QPYYSEGINSGPPLLPGE  XXXXXXXXXX                L+DAFVVDLLSRV+AAHRHLVGEIPTEVLDPPEVQALHR                                    GLVGPTGAG       +GPSVLHVEMGAGKGTLGQSIATAFPGS VTMVERSSVRRKAENRLEGVSTRARIDIRDL MGGLPSLTA GDDRPVVAVAKHLCGVATDLALR                                                   AMLTLPPRRESR+ADDGGHV NGDPT AP AATTRVGGVAIATCCHHVCNWRDYVGRDFLMQQ
Sbjct:  117 VGSTTKVCNLALQQARMVTQPYYSEGINSGPPLLPGEXXXXXXXXXXXXRGDVAVVAAVGAAAD-LDDAFVVDLLSRVEAAHRHLVGEIPTEVLDPPEVQALHR------------------------------------GLVGPTGAGGESGHGEDGPSVLHVEMGAGKGTLGQSIATAFPGSDVTMVERSSVRRKAENRLEGVSTRARIDIRDLDMGGLPSLTAAGDDRPVVAVAKHLCGVATDLALRRDGGATDGETNREKHQAGHLPFHLLVPRHFPPWLAVLALSLRRSLPNLYRRAMLTLPPRRESRDADDGGHVCNGDPTDAPAAATTRVGGVAIATCCHHVCNWRDYVGRDFLMQQ 443          
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: A0A5D6XLD7_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLD7_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.590e-33
Identity = 106/334 (31.74%), Postives = 144/334 (43.11%), Query Frame = 1
Query:   19 ICNLALQQARMVAQPYYSEGINSG----------PPLLP--------------GEEEXXXXXXXXXXXXXXXXXXXXXXXXXALNDAFVVDLLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRLEGVST-------RARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTLPPRRESREADDGGHVGNGDPTAAPTAATTRVGGVAIATCCHHVCNWRDYVGRDF 927
            +CN     A M   PYY E INSG          PP  P              G EE                         A++     DL  RV AA+   VGEIP E L     +AL   + + G      RH+ QQAS++GH+        +S                      + VE+GAG+G L  ++A +F  S   +V+R+  R KA+  +EG          RA+IDIR L + G+  +     DRPVV ++KHLCGVATDL+LRA+    PR    E+       +  P  +  A +    G+A+A CCHHVC W DYV  +F
Sbjct:  112 VCNKVKDAAAMTLLPYYVENINSGAHCVRKAGSEPPAAPIADATPEAPPIGADGGEEPKEAAAAAHAGLSANDEQGLLDKLLAVD---FPDLSRRVHAAYERCVGEIPLEKLTHACCEALFAEKKDAGAAKNVLRHIEQQASILGHMARVNLLDASS----------------------VFVELGAGRGMLSLALAQSFRDSVFVLVDRAHTRGKADRFIEGPDEAPSRKVLRAKIDIRHLNLAGMQEVV----DRPVVCMSKHLCGVATDLSLRAVTQTLPRGPGAESA----ASSAQPAVSALAVSPLFRGLAVALCCHHVCAWEDYVNPEF 412          
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: A0A835ZI09_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI09_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.400e-32
Identity = 111/350 (31.71%), Postives = 154/350 (44.00%), Query Frame = 1
Query:   16 KICNLALQQARMVAQPYYSEGINSGPPLL------------PGEEEXXXXXXXXXXXXXXXXXXXXXXXXXA------LNDAFVVDLLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRLEGVST---RARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTLPPRR----ESRE-ADDGGHVGNGDPTAAPT--------------------AATTRVGGVAIATCCHHVCNWRDYVGRDF 927
            KIC      + + +Q +YS+GINSGPPL             P                             A      +   ++ DL++R++ A+   VG I    L PPE + L  A     M  ++ RH++QQ+S++GH+          RG+V P                 ++EMGAG+G LG ++   +P S + +V+ +  R   +  L        RA++DIRDL  G LP    +G  + VV VAKHLCGV TDLALRA LTL P      ++R+ +  GG  G  D   A                      AA   + GVAIATCCHH  N  DYVGR F
Sbjct:  118 KICTFTKTASDVASQVFYSKGINSGPPLAGSPIAAAADVAAPNGSAFVDPASDPTAADEAPVIDASAVWRMAKASGGDIGGEYLSDLIARIERAYEEHVGSISALQLSPPECEPLKEAADAVKMDLKRMRHIVQQSSIIGHM--------QRRGMVQPEHC--------------YIEMGAGRGLLGLALGLTYPDSDILLVDGAKPRNAGDKGLRAKGNPPFRAKVDIRDLDAGKLP--LPQG--KRVVIVAKHLCGVGTDLALRAALTLAPAAALNGQARDHSGGGGGSGASDCGGAXXXXXXSGSRAXXXXXXXXSRFAAAHGLAGVAIATCCHHCVNLTDYVGRAF 441          
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: A0A1V9YXA2_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXA2_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.970e-30
Identity = 97/317 (30.60%), Postives = 139/317 (43.85%), Query Frame = 1
Query:   19 ICNLALQQARMVAQPYYSEGINSG-------PPLLPGEEEXXXXXXXXXXXXXXXXXXXXXXXXXALNDAFVVD---LLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRL--EGVSTRARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLT-LPPRRESREADDGGHVGNGDPTAAPTAATTRVGGVAIATCCHHVCNWRDYVGRDFL 930
            ICN   +     A PYY+  INSG           P +E                                 +D     +R++A    +VG+IPT  L+      L   +   G      RH+ QQAS++GH+         ++GL+ P+                ++E+GAG+  L  ++   +P S   +V+RS  R KA+  +  E   TRA+IDIR L + G+     E  + PVVA++KHLCGVATDL+LRA+ T LPP                     P A +  + G+AIA CCHH CNW DY+   FL
Sbjct:   99 ICNKLKEAEATKALPYYAFNINSGNNATDSPSEAAPADETAAEGDNDNDLEDGRHNQPSAARQANVFQTLTTMDHNAFAARIEAVFARVVGDIPTRTLNHEACAKLLTDKQATGAAHGALRHIQQQASILGHM--------EAKGLLHPSNT--------------YMELGAGRAMLSLALTQLYPASPFILVDRSGTRGKADQYIAPESKCTRAKIDIRHLNLAGMQ----EAVNTPVVALSKHLCGVATDLSLRALATTLPPTT-------------------PGALSPHLRGLAIALCCHHACNWEDYIHPSFL 370          
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: A0A1V9ZFQ9_9STRA (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFQ9_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.340e-30
Identity = 90/308 (29.22%), Postives = 134/308 (43.51%), Query Frame = 1
Query:   19 ICNLALQQARMVAQPYYSEGINSGPPLLPGEEEXXXXXXXXXXXXXXXXXXXXXXXXXALNDAFVVDLLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRL--EGVSTRARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTLPPRRESREADDGGHVGNGDPTAAPTAATTRVGGVAIATCCHHVCNWRDYVGRDFLMQ 936
            ICN       M   PYYS  INSG      EE                           L+         R++ A+  L+G IPT+ L+      L   +   G      RH+ QQAS++GH+          + L+ P              S  ++E+GAG+  L  ++   +P S   +++R+  R KA+  +  E   TRA+IDIR L + G+     E  + P+V ++KHLCGVATDL+LRA+ T  P  E ++                   +  + G AIA CCHH CNW DY+  D+ ++
Sbjct:   99 ICNKLKDAEAMKQLPYYSLNINSGSSTEKPEEAEETSGKDEENEHSQPTAARQASVFQTLSKMDYNVFAVRLEKAYNELIGSIPTKTLNHEACSKLLTEKQATGAAHGALRHIQQQASILGHM--------EEKKLLHP--------------SYTYMELGAGRAMLSLALTQLYPASPFILIDRAGTRGKADQYIATESKCTRAKIDIRHLNLSGMQ----EAVNTPLVCLSKHLCGVATDLSLRALATTLPPNEDKK------------------MSPHLKGFAIALCCHHACNWDDYINPDYFLK 362          
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: A0A8K1FML3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FML3_PYTOL)

HSP 1 Score: 127 bits (319), Expect = 1.050e-29
Identity = 99/322 (30.75%), Postives = 139/322 (43.17%), Query Frame = 1
Query:   16 KICNLALQQARMVAQPYYSEGINSGPPLLPGEEEXXXXXXXXXXXXXXXXXXXXXXXXX--ALNDAFVV----DLLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRLEGVST--------RARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTLPPRRESREADDGGHVGNGDPTAAPTAATTRVGGVAIATCCHHVCNWRDYVGRDFLMQQ 939
            K+CN         A PYYSE INSG   +   EE                           +L D        DL+ RV++A+   VG IPTE L      AL   ++  G      RH+ QQAS++GH+    A L  S+                       +E+GAG+G L  ++A  FP S   +++R+  R KA++ +    +        RA+IDIR L + G+  L     D P+V ++KHLCGVATDL+LRA+    P  ES  A                  +    G+A+A CCHH C W DY   +F + Q
Sbjct:  104 KVCNKTRDAEAAKALPYYSENINSGTHAVTTREELKAAEVSIEASDDTEKEHDGPTAQQEQSLIDKLAALDFADLVKRVNSAYDTCVGSIPTEKLRHSCCDALLTEKTAAGASRAALRHIEQQASIIGHME--RAKLLDSK--------------------AAFLELGAGRGMLSLALAQTFPDSLYVLIDRAGSRGKADHFIRDNMSDTSAHKVMRAKIDIRHLNLAGMKELV----DMPIVGMSKHLCGVATDLSLRAIANTVPVPESHPAG---------------VISPAFKGIAVALCCHHACQWEDYSNPEFFLAQ 384          
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: A0A3R7K0L9_9STRA (tRNA:m(4)X modification enzyme TRM13 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0L9_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.640e-29
Identity = 99/333 (29.73%), Postives = 142/333 (42.64%), Query Frame = 1
Query:   19 ICNLALQQARMVAQPYYSEGINSG-----------PPLLPGEEEXXXXXXXXXXXXXXXXXXXXXXXXXALNDAFVVDLLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRLEG--------------VSTRARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAML-TLPPRRESREADDGGHVGNGDPTAAPTAATTRVGGVAIATCCHHVCNWRDYVGRDFLMQQ 939
            +CN       M   PYYS  INSG           PP    ++E                          ++  F  DL  R+DAA+   VGE+  E L       L + +   G      RH+ QQAS++GH+                              +   VE+GAG+G L  ++A   P S   +++R+  R KA+  + G               + RA+IDIR L   G+  ++     +PVV ++KHLCGVATDL+LRA++ TLP   E +         +GD  + P + +T   G+AIA CCHHVC W DYV   F + Q
Sbjct:  105 VCNRVKDADIMKRLPYYSHNINSGSHCTEKNSVEAPPSEVSDQENVGGKENSNEHSTPSAQEQQGIIDKLVSIDFA-DLRKRIDAAYESCVGELALEKLHHKCCDQLLQEKKAAGASKSVLRHIEQQASIIGHM---------------------EQAELLEKSNAAFVELGAGRGMLSLALAQMLPDSLYVLIDRAHTRGKADRFIGGDGKDDDKNQEKEEPTTLRAKIDIRHLNFAGMREIS----HKPVVCMSKHLCGVATDLSLRAIVQTLPNPLEPK---------SGDADSEPPSISTYFQGLAIALCCHHVCAWEDYVNPAFFLTQ 402          
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: K3WRJ6_GLOUD (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRJ6_GLOUD)

HSP 1 Score: 125 bits (315), Expect = 5.180e-29
Identity = 83/258 (32.17%), Postives = 125/258 (48.45%), Query Frame = 1
Query:  217 DLLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRLEGVST-----------RARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAMLTLPPRRESREADDGGHVGNGDPTAAPTAATTRVG------GVAIATCCHHVCNWRDYVGRDFLMQQ 939
            DL+ R+ A++   VGEIP + L+     AL+  + E G      RH+ QQAS++GH+                           +      VE+GAG+G L  ++A  F GS   +++R+ +R KA+  +E +             RA+IDIR L   G+     E  ++PVV ++KHLCGVATDL+LRA+     R  +         GN    A  T + ++        G+A+A CCHHVC W DYV   F+++Q
Sbjct:  191 DLVRRIHASYERCVGEIPLQKLNHTCCNALYAEKKEAGSSKNILRHIEQQASILGHM---------------------ERMRLLDDEKATFVELGAGRGMLSYALAQQFRGSVYVLIDRAHMRGKADRFIESLEASAPSGSDKQVVRAKIDIRHLNFAGMK----EVQEKPVVCMSKHLCGVATDLSLRAITQTLSRSSN---------GNEQSQAVETESASKPSVSPLFQGLAVALCCHHVCTWEDYVNPAFILEQ 414          
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Match: H3GHR1_PHYRM (tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHR1_PHYRM)

HSP 1 Score: 124 bits (311), Expect = 8.380e-29
Identity = 96/322 (29.81%), Postives = 134/322 (41.61%), Query Frame = 1
Query:   19 ICNLALQQARMVAQPYYSEGINSGPPLLPGEEEXXXXXXXXXXXXXXXXXXXXXXXXXALNDAFVV----DLLSRVDAAHRHLVGEIPTEVLDPPEVQALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGXXXXXXXNGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAENRLEG----------VSTRARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALRAML-TLPPRRESREADDGGHVGNGDPTAAPTAATTRVGGVAIATCCHHVCNWRDYVGRDFLMQQ 939
            +CN       M    YYS  INSG      EE                           + D  V     DL  R++AA+   VGE+  E L       L   + + G      RH+ QQAS++GH+                              +   VE+GAG+G L  ++A  FP S   +++R+  R KA+  + G           + RA+IDIR L   G+  +     D+PVV ++KHLCGVATDL+LRA+  TLP     +E            T++    ++   G+AIA CCHHVC W DYV   F   Q
Sbjct:  105 VCNRVKDADAMKKLAYYSHNINSGSHSSVKEEGSTASSEEPAGDKENEHSEPSAQEQQGIIDKLVAIDFADLRKRIEAAYDSCVGELLLEKLQHKCCDQLFEEKKKAGASKSVLRHIEQQASIIGHM---------------------EQAKLLQDSNAAFVELGAGRGMLSLALAQMFPDSLYVLIDRAHTRGKADRFIGGDNKGDEGAKDTTLRAKIDIRHLNFAGMQEIL----DKPVVCMSKHLCGVATDLSLRAVAQTLPESSGGKE------------TSSEITVSSSFQGLAIALCCHHVCAWEDYVNPSFFEAQ 389          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10725.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVJ5_ECTSI9.750e-13980.83tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A6H5KUX2_9PHAE3.590e-13165.93tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Ectoc... [more]
A0A5D6XLD7_9STRA2.590e-3331.74tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Pythi... [more]
A0A835ZI09_9STRA1.400e-3231.71tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Tribo... [more]
A0A1V9YXA2_9STRA1.970e-3030.60tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Achly... [more]
A0A1V9ZFQ9_9STRA6.340e-3029.22tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Thrau... [more]
A0A8K1FML3_PYTOL1.050e-2930.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7K0L9_9STRA2.640e-2929.73tRNA:m(4)X modification enzyme TRM13 n=3 Tax=Phyto... [more]
K3WRJ6_GLOUD5.180e-2932.17tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Globi... [more]
H3GHR1_PHYRM8.380e-2929.81tRNA:m(4)X modification enzyme TRM13 n=1 Tax=Phyto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10725contigEcto-sp13_S_contig10725:406..5710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score418.3
Seed ortholog evalue3.1e-114
Seed eggNOG ortholog2880.D7FVJ5
Preferred nameTRMT13
Model size939
KEGG koko:K15446
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0009451,GO:0009628,GO:0009651,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0071704,GO:0090304,GO:0106050,GO:0140098,GO:0140101,GO:1901360
Exons6
EggNOG free text desc.tRNA methylation
EggNOG OGsKOG2811@1,KOG2811@2759
EC2.1.1.225
Cds size939
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10725.667.1prot_Ecto-sp13_S_contig10725.667.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10725 406..5710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462549.8938763-CDS-Ecto-sp13_S_contig10725:405..5951681462549.8938763-CDS-Ecto-sp13_S_contig10725:405..595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10725 406..595 -
1681462549.9109845-CDS-Ecto-sp13_S_contig10725:1181..13391681462549.9109845-CDS-Ecto-sp13_S_contig10725:1181..1339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10725 1182..1339 -
1681462549.923766-CDS-Ecto-sp13_S_contig10725:2640..28441681462549.923766-CDS-Ecto-sp13_S_contig10725:2640..2844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10725 2641..2844 -
1681462549.9339166-CDS-Ecto-sp13_S_contig10725:3514..35901681462549.9339166-CDS-Ecto-sp13_S_contig10725:3514..3590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10725 3515..3590 -
1681462549.951481-CDS-Ecto-sp13_S_contig10725:4462..45721681462549.951481-CDS-Ecto-sp13_S_contig10725:4462..4572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10725 4463..4572 -
1681462549.9602265-CDS-Ecto-sp13_S_contig10725:5509..57101681462549.9602265-CDS-Ecto-sp13_S_contig10725:5509..5710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10725 5510..5710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10725.667.1

>prot_Ecto-sp13_S_contig10725.667.1 ID=prot_Ecto-sp13_S_contig10725.667.1|Name=mRNA_Ecto-sp13_S_contig10725.667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp
VGSTTKICNLALQQARMVAQPYYSEGINSGPPLLPGEEEEEENKEKEEED
RGDVAVVAAVAAAAALNDAFVVDLLSRVDAAHRHLVGEIPTEVLDPPEVQ
ALHRARSEEGMGFRKGRHVLQQASLVGHLFLFTAFLPTSRGLVGPTGAGG
DGGDGENGPSVLHVEMGAGKGTLGQSIATAFPGSCVTMVERSSVRRKAEN
RLEGVSTRARIDIRDLYMGGLPSLTAEGDDRPVVAVAKHLCGVATDLALR
AMLTLPPRRESREADDGGHVGNGDPTAAPTAATTRVGGVAIATCCHHVCN
WRDYVGRDFLMQQ
back to top

mRNA from alignment at Ecto-sp13_S_contig10725:406..5710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10725.667.1 ID=mRNA_Ecto-sp13_S_contig10725.667.1|Name=mRNA_Ecto-sp13_S_contig10725.667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5305bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10725:406..5710- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGTTCGACTACCAAGATATGCAACCTGGCGCTTCAGCAGGCCCGCAT GGTGGCCCAGCCGTACTATTCCGAGGGTATTAACTCTGGTCCCCCGCTTC TCCCCGGAGAGGAAGAGGAGGAGGAGAACAAGGAGAAGGAGGAGGAGGAC AGGGGCGATGTTGCTGTTGTCGCTGCTGTTGCCGCCGCTGCCGCCCTGAA CGTGAGTGGCGCTATGTAGCGCCATGAAAAAAATTCAAAACGACATGAGG GATTTGTCCTGTAGATGAATGCTCCAATCGGTGCTGTTCTATGTGTTGCC TGGTGTCTAGGACGCGAGACCCTGCTGATCGCAATAGAAGAAACCAACAA CAGCAGCAACAACACCAGATACATCATTTGTAAATCGAAACGAAGTAAGA AGTGTAGGACGTGTTGAGGGAACTTTGGTCGGCCGCGGGCGGTGGTCGCG AGAGCAGCAACTGGCTTGGTCGCACCTGGTGACAGGTGACGTGGGACCAA AATAGCCTGTACCTGTATCGAAGGTACTGAGAGGCCCTGCCCCGTTACGA GAGTTTGTTCTCAACGCGGTCACAGTACCTCGGCGCTACCGGCATTGCTT TGCCTCCTTGTACATGTGATGTTTTTGTCGCCCCTCCAATAGGAATTGTA CCACGTTGCATTGCCGTTTCTGTTGTGTCTGCGGTGTTCTGTGTTGCTCT TGTTTTCGTTGTATTCGCGTCGTTTTCACTTTCTGACTTTTCTAGGCAAA ATTGTACGCAAACTTCTCGGTGAGGCTCCGAGCTGATGTTGATCTTTCTT CATACTTCAAAACATATGCACCCCTTTCTTTTACGCAAATGAATATTTAT ATTGCGGTTTCGAAAATATTTTACGTGGCGTTCATGCAACGATAATAGTC TTCAATAATTGCACCTGGCAGCAGCTAGTGAGAGTAAATTTCATGTATTT GGCAACAGATTTTCATTGCAATATCGTTTGTGCAGAATTCGAATGTTCAA GAAAGACCGCACGGCACAACCGAATAGCACCAGCAACTAGCCATAACCAG AATGAAGCATGCAACCAACAAGTACTACGGTGGGCACTTCTTTCCGCCCT CCTCCCGCTCCTTTTTTTTCCCTGACGTTGTCACCTAGGATGCTTTTGTG GTAGACCTGCTATCCCGGGTCGACGCGGCGCACCGCCATCTCGTCGGGGA AATTCCCACGGAGGTGCTGGATCCCCCGGAGGTGCAAGCACTACACAGGT GGGCCGTCGTTGCCGTTGTTGCCGTTGTTGTTGTCGTTGTTGTTGTTGTT GTTGTTGTTGTTTCTGCTGCCGCTGCTGCTGCTGCTACTGCTGCTGCCGA TTTCTGCTGTTAGTGTCGCCATTGTCTGTGGTGGTGCTGTTGTTGTGGTC GCTGTTGTTGGCTTCACATGAACAGTTGAGCAGCTGTCCTTTATCCAGTA TATGTACCTCCTGTTTCGCAACTTTCCGAGGTAACCCAGAACGGTCTTCC CAGAAGACGATACAACAAGAACCGACATCAGTAGGTGGGAGAGAGTCGCA CCGCTCGGCATGTTGATGGATAGAGGGGCAATCGAACGGGCTTGCGCGTA TTTGGGAGCCTGTGGTGTGGTGACATTGTGAAATTTTGGCGACCGGTGTC TGAACGCGACATGCCCACGCACGTGCCGACCACGTGCGCCGTAAATGTAT TTAACACGTCTAGTGCTACTAGTCCGCTCTGAATCCTTTGAAACCCCCTC CCCTCGCGAAAGACTGGCTTGAGGTTGGCCGCCGCCAATGCGTGAGGTTG TGAACAGTTATTCAGCCATAAGCCGTTCCAAATGACCGGATTGCTATGCA TTTCGATTGGTACTCATTTGCACGGTCTCTCCTGGAATAGGCGGAGGCGC TGCGCCTTCTTCATCCGCTGCTGATCATGAGGCTTTCACCCCCGTTCCCC TCCTGAAGCGATCTCACTGTGCACCTCTTTTCGCAGTCCCCTCTCCTGAG CATACCCCACATACAGCCAGCCCGAATCCGGGTGCACGCACGCACATTGC ACATTTCGAGAGTTGGTAGAAGTTTCACCGCGGCACGTCCCTTTGTTGTC CGTGATTCGTTTTTTGGAAGGGCTCGATCCGAAGAGGGCATGGGTTTCCG CAAAGGGAGGCATGTGCTGCAGCAGGCGTCGCTGGTTGGTCACCTCGTCA AAAGGCGAGCCGACAGAGTTCAAGGACCCCACGGGTTTATTCTCGCTACA TACCGATGGGCGGGTTTCTTGTAGTTTGTTGAGCGTTGGCGGCGGTCTGC CCTCTGTTTTTTCTAATGCTCCTTGTTGGCGCCTTTCGCTTTGCTCCGTA ACGTGCGACACTTCATACTCGATGGAGAATGGTTGTTCGGGAAGGGGGCG TGTTCGTTTGTGCGTAGTGTTCGGGATTATTCATTTTGGTCGTGAAAGCT TGAACCTCCCGTTCTACACGCCACGCGAGGAGCTTTGAAGAGGTGGAAAC CAACCCGATGAACTTCTATCGTCACCTTCTGCTGCACGGAGAGGATTAGA GTTGGAGGGCAACGGCTGTCGTCATCATCGTGGAGAGACGCGGAAACCAT CCATACAGGAACTCACCATTTACTATCTCTTCCAATTTCCCATGTAACCG GGGGTTACTGATCACCTCCACCAGAGGAATTATGTCCGCCGCTTTTGCTG TAGTCCCGACAACTCAATATCGTTCCATCATGTATTTTTTCTTCTTTTTT TTCAAAGCCACAACGTAACGAATGCATTTATATCCACAGGAAAGAGCCCG GGGTAAGATTAGCAATGAATCCAAGGCGGTAAAAAGGCGGTAACCCAAAA AGTGTTCATAAATCAGTTCTTGTTTACCGCTTTTCTGCCAACATCCAGGG GGCTCGTTGGTCCTACGGGCGCCGGCGGTGACGGCGGTGACGGCGAGAAT GGCCCGAGCGTGCTGCACGTAGAGATGGGCGCGGGCAAGGGCACCCTCGG ACAGTCCATCGCCACCGCTTTTCCAGGGTCCTGCGTTACCATGGTTGAGC GCTCCTCCGTTCGACGAAAGGTACGACAAGAGAGATCTTGTCCTAGAGAA CGGGGGTAGAGGCGAGGGGTACATCCCCCCCACCACGGGTTTCAACCGAT CCAGTGGCCCCGGATGGTTGCAGTTGTACGCAAACACTGAAAAGTGTAGC ACTCTACAGACACTGAAACACCTACCGTATATGACACAAGATAGCACACC CCTTTGCCCGATTTTCAAAACTCGATTTCTCAACAGCAGGAAGAGTCACA GCGCTAAAAATGGTAGCATTGAAACCGTCTTGTCAAGAGCTTTTCGAATA TGTATCATTTAGTTTGTGCAACCTCTTCGTTGTGGAGTAATGGAGCTTCG AAAATCGTGACAGGGGGTGTGTTATCTTGTGTCATATACGGTATAGTACA CGTCCCACCACGAAAAGTGGGGGGCCTGTCGCCATAATAAATAGGACGAA AACCCACACAAGACATGATTGTAGTTGAACGAAAACACTGAAAAGTGTAG CACTCTACAGACACTGAAATGCCTATAGTACACGTCCCACCACGAAAAGT GGGGGGCCTGTCGCCATAATAAGTAGGTCGAAAACACACACAAGACAATG CGATGTTTGGTTGTTCTGTTCTGATTTCGGTCTCCTCTCTTGTCAGAGGT GTTTATGTTACTCTGTTGTAGTAGGACGAGTTCATTGCAATCCGCACCCC TGAGACTCTACAATATTAGACGGGAAATTTTGTGCTTCGGCCGGTTGACC GCTTGTCGCCGGAGCCTTAGCTCCGCGGATGCCATGATGGCGCGCGATGC ACCCAAGGGCCAAGGGTTACACCATATGTTGTTGTTAAGTGTGACACTTT CATCTATCTGCATGTGGGCATAGCGCCATTTTTGCTACGTGGCTCTTCGT GCCATTTGCTTCGGTGAACGCTCGTATGTGAGCTATATGTAACGGTAATA TAAATCTCTGACGTCGTGCGTTTGAATTGGGGCATTCAAAAGCACCGACA GCGGCAGTACGCCTAAAAGAAGCTCGTTTTCATGTGTTGTTTTCCGCTTT TTTTGTCGACAGTTTCGTGCAGCATTGTTGACCCGCTATGTCGTAAACCT TTTGTTCTGGTTGGGATCTAGCCGGATACTTCGCTTGATCACTGCTGCAG TTTCCTCTCCTTCGCTGTTCCCCAGCTGCAGACCAACCCGGGTGATGGAC TATATCAGACAACAAGTAGACAGTGACGTGGCACGATGTGTCTTGTGCAG TGTATAGCCTCCCTTCTTCCCCCGCCCCTTTCATTCGTTGTGCGATGCGA TTCTAAAAATTTGTTGCTCAGGCGGAGAATCGACTTGAGGGCGTGAGCAC GAGGGCGAGGATCGACATCCGCGACCTCTACATGGGCGGCCTGCCTTCCC TCACGGCCGAGGGGGACGACAGACCGGTCGTGGCGGTCGCTAAGCACCTG TGTGGGGTGGCGACCGACTTGGCTCTCAGGTGAGATGGGGGGCGACCGAC GGAGAGACTAGCAAGGAGAAGCATGAAGCGGGAGAAGCCGGAATATTGAA GAGACGGACAGACAGGCAGAGAGAAAGACAGATAGAGACAGAGGCAGAGA CATAAGTAGAGACAGACACACAGACAGATACACGCAGACACACACAGAAA GAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GATAGACAGACAGACAGACAGACAGAGAAACAGAGAGATGGACGGATTTT GACACTTGCATAGCAGATAATAGAGCGCTGCTTTCCTTCACACCAGGTGC TCGTTGGTACTAACAACGCTGCCGTGCTCCTACCCCTTCGTTCGACACGC TAAGCGCACAACGGTTTCGGCCAACGTTTTGCAACATAGAAAACAAGGGC GTGGGTCGACCACGACGTATCTTCATAGCAGAATCCCTCTGAATACGTAT CATCTCAACGACCAAAGCACCTGCCATTTCACCTCGTCGTACCTCGGCCC TTTTCCCCTGGACTGGCTGTCCTCGTGCTGAGTCTCGGTCGTTCACTCCC CAAATTGTATCGCAGAGCAATGCTTACCCTTCCCCCCCGACGGGAGAGCC GTGAAGCCGATGACGGTGGCCACGTTGGCAACGGTGACCCAACGGCCGCC CCTACGGCGGCGACGACAAGGGTGGGAGGGGTTGCGATCGCCACGTGCTG TCACCACGTGTGTAACTGGAGGGACTACGTGGGCAGGGACTTCTTGATGC AGCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10725:406..5710-

>mRNA_Ecto-sp13_S_contig10725.667.1 ID=mRNA_Ecto-sp13_S_contig10725.667.1|Name=mRNA_Ecto-sp13_S_contig10725.667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10725:406..5710- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGTTCGACTACCAAGATATGCAACCTGGCGCTTCAGCAGGCCCGCAT
GGTGGCCCAGCCGTACTATTCCGAGGGTATTAACTCTGGTCCCCCGCTTC
TCCCCGGAGAGGAAGAGGAGGAGGAGAACAAGGAGAAGGAGGAGGAGGAC
AGGGGCGATGTTGCTGTTGTCGCTGCTGTTGCCGCCGCTGCCGCCCTGAA
CGATGCTTTTGTGGTAGACCTGCTATCCCGGGTCGACGCGGCGCACCGCC
ATCTCGTCGGGGAAATTCCCACGGAGGTGCTGGATCCCCCGGAGGTGCAA
GCACTACACAGGGCTCGATCCGAAGAGGGCATGGGTTTCCGCAAAGGGAG
GCATGTGCTGCAGCAGGCGTCGCTGGTTGGTCACCTCTTCTTGTTTACCG
CTTTTCTGCCAACATCCAGGGGGCTCGTTGGTCCTACGGGCGCCGGCGGT
GACGGCGGTGACGGCGAGAATGGCCCGAGCGTGCTGCACGTAGAGATGGG
CGCGGGCAAGGGCACCCTCGGACAGTCCATCGCCACCGCTTTTCCAGGGT
CCTGCGTTACCATGGTTGAGCGCTCCTCCGTTCGACGAAAGGCGGAGAAT
CGACTTGAGGGCGTGAGCACGAGGGCGAGGATCGACATCCGCGACCTCTA
CATGGGCGGCCTGCCTTCCCTCACGGCCGAGGGGGACGACAGACCGGTCG
TGGCGGTCGCTAAGCACCTGTGTGGGGTGGCGACCGACTTGGCTCTCAGA
GCAATGCTTACCCTTCCCCCCCGACGGGAGAGCCGTGAAGCCGATGACGG
TGGCCACGTTGGCAACGGTGACCCAACGGCCGCCCCTACGGCGGCGACGA
CAAGGGTGGGAGGGGTTGCGATCGCCACGTGCTGTCACCACGTGTGTAAC
TGGAGGGACTACGTGGGCAGGGACTTCTTGATGCAGCAG
back to top