mRNA_Ecto-sp13_S_contig1072.661.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1072.661.1
Unique NamemRNA_Ecto-sp13_S_contig1072.661.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1072.661.1 vs. uniprot
Match: A0A6H5JDI2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI2_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 4.970e-40
Identity = 207/293 (70.65%), Postives = 213/293 (72.70%), Query Frame = -2 
Query:    3 RARGLTATPPHRRPRRLPQGQSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAVLAGVGGIRQRAGSDAGRREPKRKRGFLFPLAAATAARPLPRKIPPASSSSSLAPIVLADSPCSSLSPPSPPARRGSTPAPPSGLAGKDELAAAEPSSSRDSRRKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLDVLDLSTMSASPMEVIDVLDDCGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXGDSHASAAGSRRAGNARSPETKRSVS 881
            RAR +TATPP RRPRRLP+GQSEE                        XXX   VLAGVGG R+RAGSDAGRREPKRKRGFL  LAAAT ARPLPRKIPPASS SSLAPIVLA+SPCSSLSP                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APLDVLDLSTMSASPMEVIDVLDDCGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX  +H+SAA SRRA N RSPETKRSVS
Sbjct:  176 RARAMTATPPRRRPRRLPRGQSEEEVFLTSGGEEADKINRSGRGAGEEXXXXXXVLAGVGGTRRRAGSDAGRREPKRKRGFLVSLAAATGARPLPRKIPPASSFSSLAPIVLANSPCSSLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAPLDVLDLSTMSASPMEVIDVLDDCGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTHSSAAWSRRAVNGRSPETKRSVS 468
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1072.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI2_9PHAE4.970e-4070.65RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1072contigEcto-sp13_S_contig1072:16254..17137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size886
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_000660.1
Cds size882
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462549.4985094-CDS-Ecto-sp13_S_contig1072:16253..171351681462549.4985094-CDS-Ecto-sp13_S_contig1072:16253..17135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1072 16254..17135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1072.661.1prot_Ecto-sp13_S_contig1072.661.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1072 16254..17135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1072.661.1

>prot_Ecto-sp13_S_contig1072.661.1 ID=prot_Ecto-sp13_S_contig1072.661.1|Name=mRNA_Ecto-sp13_S_contig1072.661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp
VETDRLVSGLLAFPARLLPAAEAWLSPAPPELLPPPPPLLAPGLTAAVVE
PLPFLAALIGGRRGETTALLLLLSSSPQSSSTSMTSIGDADIVERSSTSR
GAEEDEAGGRVAAGDVDNELLRAASLEGVGDPSRAFRRLSLDEEGSAAAN
SSLPASPDGGAGVEPRRAGGDGGDSDEQGLSARTIGARDEEEDAGGIFRG
RGRAAVAAARGNRKPRLRFGSRRPASLPALCLIPPTPARTAASRSSSSPA
PPPLRFVLSPSPPPLVRTTSSSDCPCGRRRGRRWGGVAVKPRAL
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mRNA from alignment at Ecto-sp13_S_contig1072:16254..17137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1072.661.1 ID=mRNA_Ecto-sp13_S_contig1072.661.1|Name=mRNA_Ecto-sp13_S_contig1072.661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=884bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1072:16254..17137+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGAAACGGATCGTTTGGTCTCAGGACTTCTCGCGTTCCCCGCGCGTCT
GCTCCCAGCGGCGGAGGCATGGCTGTCCCCGGCCCCGCCGGAGCTTCTGC
CGCCGCCGCCGCCGCTGCTCGCACCCGGCCTGACGGCGGCTGTAGTCGAG
CCGCTGCCGTTCCTCGCCGCGCTCATTGGTGGCCGTCGGGGGGAGACGAC
GGCACTGCTGCTGTTGCTGTCGTCGTCACCACAATCATCCAGCACGTCGA
TGACCTCCATCGGCGATGCCGACATCGTGGAGAGGTCAAGCACATCCAGG
GGGGCGGAGGAGGACGAGGCGGGAGGCCGGGTTGCCGCCGGCGACGTTGA
CAACGAGCTTCTCCGAGCCGCCTCGCTGGAGGGCGTGGGCGACCCCTCCC
GTGCTTTCCGACGACTATCTCTCGACGAGGAAGGCTCCGCCGCCGCCAAC
TCGTCCTTGCCAGCAAGTCCTGACGGCGGCGCCGGGGTCGAGCCGCGACG
AGCGGGAGGCGATGGTGGCGATAGCGACGAGCAAGGGCTGTCGGCTAGAA
CAATTGGTGCGAGGGACGAGGAGGAGGACGCCGGTGGTATTTTCCGAGGC
AGAGGTCGGGCAGCCGTCGCTGCTGCGAGAGGAAACAGGAAACCACGCTT
ACGTTTCGGCTCCCGCCGACCTGCATCGCTTCCGGCCCTTTGCCTTATTC
CTCCAACTCCCGCGAGGACAGCAGCCTCCCGCTCTTCCTCCTCTCCCGCG
CCACCGCCGCTTCGATTTGTCTTGTCCCCCTCTCCCCCCCCGCTCGTGAG
AACAACTTCTTCTTCCGATTGTCCTTGCGGGAGGCGCCGTGGTCGCCGAT
GGGGCGGCGTTGCGGTCAAACCGCGAGCCCTGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1072:16254..17137+

>mRNA_Ecto-sp13_S_contig1072.661.1 ID=mRNA_Ecto-sp13_S_contig1072.661.1|Name=mRNA_Ecto-sp13_S_contig1072.661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1072:16254..17137+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGAAACGGATCGTTTGGTCTCAGGACTTCTCGCGTTCCCCGCGCGTCT
GCTCCCAGCGGCGGAGGCATGGCTGTCCCCGGCCCCGCCGGAGCTTCTGC
CGCCGCCGCCGCCGCTGCTCGCACCCGGCCTGACGGCGGCTGTAGTCGAG
CCGCTGCCGTTCCTCGCCGCGCTCATTGGTGGCCGTCGGGGGGAGACGAC
GGCACTGCTGCTGTTGCTGTCGTCGTCACCACAATCATCCAGCACGTCGA
TGACCTCCATCGGCGATGCCGACATCGTGGAGAGGTCAAGCACATCCAGG
GGGGCGGAGGAGGACGAGGCGGGAGGCCGGGTTGCCGCCGGCGACGTTGA
CAACGAGCTTCTCCGAGCCGCCTCGCTGGAGGGCGTGGGCGACCCCTCCC
GTGCTTTCCGACGACTATCTCTCGACGAGGAAGGCTCCGCCGCCGCCAAC
TCGTCCTTGCCAGCAAGTCCTGACGGCGGCGCCGGGGTCGAGCCGCGACG
AGCGGGAGGCGATGGTGGCGATAGCGACGAGCAAGGGCTGTCGGCTAGAA
CAATTGGTGCGAGGGACGAGGAGGAGGACGCCGGTGGTATTTTCCGAGGC
AGAGGTCGGGCAGCCGTCGCTGCTGCGAGAGGAAACAGGAAACCACGCTT
ACGTTTCGGCTCCCGCCGACCTGCATCGCTTCCGGCCCTTTGCCTTATTC
CTCCAACTCCCGCGAGGACAGCAGCCTCCCGCTCTTCCTCCTCTCCCGCG
CCACCGCCGCTTCGATTTGTCTTGTCCCCCTCTCCCCCCCCGCTCGTGAG
AACAACTTCTTCTTCCGATTGTCCTTGCGGGAGGCGCCGTGGTCGCCGAT
GGGGCGGCGTTGCGGTCAAACCGCGAGCCCTG
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