mRNA_Ecto-sp13_S_contig20075.6558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: D7FQ66_ECTSI (Putative oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ66_ECTSI) HSP 1 Score: 315 bits (806), Expect = 7.270e-106 Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSAVGGRAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRWASTNNQGAAGGLARGAGAAQHEVGA 483
GIGKECCRHLAALG YRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSAVGGRAVSAVIHNAGVMAVPY+TTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRWASTNNQGAAGGLARGAGAAQHEVGA
Sbjct: 38 GIGKECCRHLAALGGYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSAVGGRAVSAVIHNAGVMAVPYRTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRWASTNNQGAAGGLARGAGAAQHEVGA 198
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: A0A835YS02_9STRA (Putative oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS02_9STRA) HSP 1 Score: 147 bits (370), Expect = 5.670e-40 Identity = 77/155 (49.68%), Postives = 100/155 (64.52%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECH-----------------PLDLASFSSVRSFAKSAVGGRAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRWAS 414
G+G+EC + LAA + V++ACR+V AG +IL HP A +EC LDLA F+SVR+FA+ A+G R VS+++HNAGVM P Q T DGH+LT QVNHLA F LT LLLPN++ A ++ G SRVV+V+SG HRW S
Sbjct: 44 GLGRECVKTLAATKTH-VILACRDVKAGAAVVEEILEVHPGASLECQITQHVNTNCCAPGRSPQKLDLADFASVRTFAEQAIGDRPVSSIVHNAGVMGAPRQLTKDGHDLTIQVNHLAPFLLTNLLLPNMKAAAKELGRSSRVVVVSSGTHRWGS 197
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: A0A5C7INL4_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7INL4_9ROSI) HSP 1 Score: 110 bits (276), Expect = 1.840e-26 Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSAVG-GRAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRWA 411
GIG E R LA G + V+MA RNV AG++ IL+ HP A ++ LDL+S +SVR FA + G + +I+NAG+MA P+ T D EL FQ NH+ F LT LLL +++ R++G R+V+VAS H++A
Sbjct: 33 GIGIETARVLALRGVH-VIMAVRNVAAGNDIKESILKNHPSANIDVMELDLSSLASVRKFASDFIARGLPLHILINNAGIMATPFTLTKDNIELQFQTNHIGHFLLTNLLLETMKKTARESGREGRIVVVASDGHKFA 169
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: A0A059DJU8_EUCGR (Uncharacterized protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059DJU8_EUCGR) HSP 1 Score: 107 bits (267), Expect = 5.760e-26 Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSA-VGGRAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRWASTNNQG 429
GIGKE R LA G V+MA RN+ AG + +I+++ P A V+ LDL+S SVR FA + G A++ +I+NAG+MA P+ + D EL F NH+ F LT LLL N+++ R + R+V V+S AHRW T N+G
Sbjct: 40 GIGKETARVLALRG-VNVVMAVRNMAAGRDVREEIVKEIPSAKVDAMELDLSSMVSVRKFASNFNSSGHALNILINNAGIMATPFILSKDNIELQFATNHIGHFLLTNLLLDNMKKTARKSSREGRIVNVSSEAHRW--TYNEG 180
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: A0A059DJW5_EUCGR (Uncharacterized protein n=3 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059DJW5_EUCGR) HSP 1 Score: 107 bits (267), Expect = 2.520e-25 Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSA-VGGRAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRWASTNNQG 429
GIGKE R LA G V+MA RN+ AG + +I+++ P A V+ LDL+S SVR FA + G A++ +I+NAG+MA P+ + D EL F NH+ F LT LLL N+++ R + R+V V+S AHRW T N+G
Sbjct: 40 GIGKETARVLALRG-VNVVMAVRNMAAGRDVREEIVKEIPSAKVDAMELDLSSMVSVRKFASNFNSSGHALNILINNAGIMATPFILSKDNIELQFATNHIGHFLLTNLLLDNMKKTARKSSREGRIVNVSSEAHRW--TYNEG 180
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: G3PFC3_GASAC (Retinol dehydrogenase 12 n=2 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PFC3_GASAC) HSP 1 Score: 105 bits (262), Expect = 2.680e-24 Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSAVGG-RAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRW 408
GIGKE LA G RV+MACRNV G EAA+ I HP+A VE LDLA S+R+FA+ +G ++ +I+NAGVM PY T+DG E+ VNHL F LT LL+ L+R+ +R+V+V+S AH +
Sbjct: 57 GIGKETALELAVRG-ARVIMACRNVDKGEEAADSIRAAHPEAQVEVRELDLADTCSIRAFAQKFLGEVNSLHILINNAGVMMCPYTKTIDGFEMHIGVNHLGHFLLTSLLIGLLKRSAP-----ARIVVVSSLAHNF 187
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: A0A4Z2HEV2_9TELE (Retinol dehydrogenase 12 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2HEV2_9TELE) HSP 1 Score: 103 bits (258), Expect = 1.120e-23 Identity = 64/137 (46.72%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSAVGG-RAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRW 408
GIGKE LA G RV+MACR+V G EAA+ I HP+A VE LDLA S+R+FA+ +G + +IHNAGVM PY T+DG E+ VNHL F LT LL+ ++R+ +RVV+V+S AH +
Sbjct: 77 GIGKETATALAVRG-ARVIMACRDVDKGEEAADGIRAAHPEARVEVRELDLADTCSIRAFAQKFLGEVNHLHILIHNAGVMMCPYTKTIDGFEMHIGVNHLGHFLLTSLLIGLMKRSAP-----ARVVVVSSLAHNF 207
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: A0A1U7YUZ8_NELNU (short-chain dehydrogenase TIC 32, chloroplastic-like n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7YUZ8_NELNU) HSP 1 Score: 102 bits (255), Expect = 2.230e-23 Identity = 62/137 (45.26%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSA-VGGRAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRW 408
GIG E R LA G RV+MA RNV AG + IL++ PDA ++ LDL+S +SVR FA G ++ +I+NAGVMA P++ + D EL F NHL F LT+LLL ++ RD+ + R+V V+S AHR+
Sbjct: 40 GIGTETTRVLALRG-VRVVMAVRNVDAGMDVKETILKEIPDAKIDVMELDLSSLASVRKFASEFNSSGLPLNILINNAGVMATPFKLSKDNIELQFATNHLGHFLLTDLLLATMKITARDSKKEGRIVNVSSEAHRF 175
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: A0A6P6WQK5_COFAR (short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 n=5 Tax=Coffea TaxID=13442 RepID=A0A6P6WQK5_COFAR) HSP 1 Score: 102 bits (255), Expect = 2.500e-23 Identity = 61/136 (44.85%), Postives = 82/136 (60.29%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSAVG-GRAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHR 405
GIG E R LA G V+MA RN+TAG E + I+++ P A V+ LDL+S +SVR FA GR ++ +I+NAGVM P+ + D EL F NHL F LT LLL +++ Y +T R+VIV+S HR
Sbjct: 40 GIGAETVRVLALRG-VSVVMAVRNMTAGQEVKDAIVKEIPAAKVDVMELDLSSLASVRKFAAGFTSSGRPLNILINNAGVMGTPFTLSKDNIELHFATNHLGHFLLTNLLLDAMKKTYHETQREGRIVIVSSDGHR 174
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Match: A0A251UPQ6_HELAN (Putative glucose/ribitol dehydrogenase n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UPQ6_HELAN) HSP 1 Score: 101 bits (251), Expect = 2.890e-23 Identity = 60/138 (43.48%), Postives = 85/138 (61.59%), Query Frame = 1
Query: 1 GIGKECCRHLAALGDYRVMMACRNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSA-VGGRAVSAVIHNAGVMAVPYQTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTGELSRVVIVASGAHRWA 411
GIG+E R LA G + V+M RNVTAG + I+++ P A V+ LDL+S +SVR FA GR+++ +I+NAG+M P+ + D EL F NHL F LT LLL N+++ R + R+V V+S AHR+A
Sbjct: 40 GIGRETARVLALRGAH-VVMGVRNVTAGKQVQEAIIKEIPTAKVDAMELDLSSMASVRKFASEFNSSGRSLNLLINNAGIMMTPFLLSKDSIELQFATNHLGHFLLTHLLLDNMKKTARKSKIEGRIVNVSSEAHRFA 176 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20075.6558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig20075.6558.1 >prot_Ecto-sp13_S_contig20075.6558.1 ID=prot_Ecto-sp13_S_contig20075.6558.1|Name=mRNA_Ecto-sp13_S_contig20075.6558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp MLSASRGARRLQGHDGLPERDRGPRSRQRHPPAAPGRLRRVSPSGPGFLLback to top mRNA from alignment at Ecto-sp13_S_contig20075:3..2899- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig20075.6558.1 ID=mRNA_Ecto-sp13_S_contig20075.6558.1|Name=mRNA_Ecto-sp13_S_contig20075.6558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2897bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20075:3..2899- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20075:3..2899- >mRNA_Ecto-sp13_S_contig20075.6558.1 ID=mRNA_Ecto-sp13_S_contig20075.6558.1|Name=mRNA_Ecto-sp13_S_contig20075.6558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20075:3..2899- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |