mRNA_Ecto-sp13_S_contig20058.6550.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20058.6550.1
Unique NamemRNA_Ecto-sp13_S_contig20058.6550.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig20058.6550.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.120e-22
Identity = 50/89 (56.18%), Postives = 56/89 (62.92%), Query Frame = 3 
Query:  411 GECCYACNNELSTAV-PIFFCRGCGKLSHGDCTGYRLDSRQSPAPDWVCPCCPDGERGPIEICVHLSLKGLGSVKQTLGNQPWCPICLK 674
            G  C AC    +  V P F CR C KL H  C GY   +RQSP PDW+CP CP GERGP    VHLS+ G G+VKQ  GN PWCPICL+
Sbjct:  119 GRGCEACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGPSPQ-VHLSVAGKGTVKQRKGNMPWCPICLR 206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20058.6550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI7.120e-2256.18PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20058contigEcto-sp13_S_contig20058:816..3189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size812
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionZinc finger, FYVE/PHD-type
Ec32 orthologEc-03_000240.1
Cds size612
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.2956865-CDS-Ecto-sp13_S_contig20058:815..8821681463009.2956865-CDS-Ecto-sp13_S_contig20058:815..882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20058 816..882 +
1681463009.3051102-CDS-Ecto-sp13_S_contig20058:2230..23131681463009.3051102-CDS-Ecto-sp13_S_contig20058:2230..2313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20058 2231..2313 +
1681463009.313571-CDS-Ecto-sp13_S_contig20058:2528..29901681463009.313571-CDS-Ecto-sp13_S_contig20058:2528..2990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20058 2529..2990 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463009.3218482-UTR-Ecto-sp13_S_contig20058:2990..31891681463009.3218482-UTR-Ecto-sp13_S_contig20058:2990..3189Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20058 2991..3189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20058.6550.1prot_Ecto-sp13_S_contig20058.6550.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20058 816..2990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20058.6550.1

>prot_Ecto-sp13_S_contig20058.6550.1 ID=prot_Ecto-sp13_S_contig20058.6550.1|Name=mRNA_Ecto-sp13_S_contig20058.6550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
AVGVRENLHRQDSNAGGTDVAVDILLSFGGEPCAVSPGDLPLDLAPQGTK
DAVFVACCKGDGDTTTTGLPSPAQQPAAPVTPALAPAPDPAAERITTAAA
PDQTRVSPGANRRYLPATLLHRVLVEQELETPAATRVGNAATRATTNFLP
PYQYFSAGVAASSPTGIVQATASIQGNPPRPIGFVPAARMASVGLSRYAF
TCP*
back to top

mRNA from alignment at Ecto-sp13_S_contig20058:816..3189+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20058.6550.1 ID=mRNA_Ecto-sp13_S_contig20058.6550.1|Name=mRNA_Ecto-sp13_S_contig20058.6550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2374bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20058:816..3189+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTTGGTGTCCGAGAAAACTTGCATCGCCAAGATTCGAATGCGGGAGG
GACAGACGTTGCTGTAGGTAGGAGAAGAATTTCCCCCGGTAATGTAGCAC
CGGTAATGTAGCACTGACATCCAGGGCAGTGGAACGGTTAGTGCTGGGAA
CGAGGGGCCCTGACGAGAAAGCTCCGGTAGCATATACTTCGAAGTATATC
GGTGCCGCGGAGGGAGTGCCCCCGGTTGCGACATGATGCTCATGTGCGTG
GCGCAGGAGCGAGGGTAGACCAGGAGGCCGGCAAGAACTGTAGAGAAGCA
GTGGGTGGGTTCCTTTCGTGTCTTTCCTGGGGTGTGACGTCGCGAAAAAA
TCAGCTCGACCCGGTTTGTGCACGGGTAAACTTGTAGCCGCCTTGGGCAA
GAACCGTTCGAGGGATGAAGCGCTCCGTCCCACTCCGTGACGTTGGAGTT
ACACGCTCCTTTTCTCGTGCCGCCATTTTGCCAAGTATCCGTTCCACCTT
TTGGCATTTCCCAAAAAAAGAGACCCGCGCTGCACAGTGATGTTTGCCAG
CTGCCACCACCGATGCATGCAAGTTTTCGGAGTTCTCGGGCCAGTTCTAC
CGCGTCAACACCAAGATCGGTAGGCTTCAATCTAGAAAACAGAGTAGATG
ACAATCAGCAGAGGGAGCGTCAATCAGCAGATGGAGTGTCGTTCGTGTCG
TTGTGAATCCTCGTGTTTCAACCCCCTTCCTCTTCGCATAAGCTATGCAC
ATCCAGTCCGACCCGACCTAGCTAATAGGCCTCTCCACCGACTACTGCTC
TTGTCCTTGCCTTCGCTCGTCGAACCTCGTGAACTAGGTCAATTTCTACA
TTGGTTAGGCATTATATATGGTGACGATATTTCGTCAGAAATAAACTAGG
TGTAACTGTCAACGCGCTGCGAACCGGTAAAGGAAGTTCAGCTCAAGCTT
CAAATAGTGTTACACTGTGTCTAAGGGGTGCGATACTTTTTCGGAGTCTA
AAACCCGTGTCGAATGGATCATTCGCGATATAGGAAATTGCTTTGTACTG
TTGATGGACAGCCGTTGCGTTTCTATTTATTTCAGTTCTTGGACACAACC
GCCGGACCAACGAACGATCTTGGGCGGTCAGCACCGGAACTGCCTGCAGA
TAGTATGGTTGCCTTGGTGTTCGCTCGGAAGGGTGCAGCTCAGCGGTCGC
CATTTTGTTGCTTAAAGCCACTCAGGGCAATACAACCCCCACGTCATTTT
CGCAAGTACGCAGCGCTAAGCATTTTACACAGCTCCTTTTCTTGAGAAGC
TATGACTTGCGCTTCTTGCAGAGTTCGTGCCTTATGGACTGCTCATCTCA
TGAGAAATGGTTCATTCGGTCTTTCCGCTAGGTTCTTCTCCTCTCTTGGG
TTGACAACGACCTAGATATTCTACTTTCCTTCGGCGGAGAACCATGCGCT
GTATCCCCCGGCGACTTGCCTCTAGATTTGGCTCCTCAAGGTACCAAGGT
ATGTTGAAGCGTTCAAGGTCCTATGTTGTGAACTGTGCGCCAAAGCTTAC
CCATGCTCGAGCTACACGAATCCGGACCACTTGGTGGTAGATGTTTCAGC
TCCTCCGATTGAGCATCTTGTTCTCCGCTTTCCGGCTGTTGAGCTGCTAC
TAGCCCTCGTTGACGGCCCCATGTATCGCAATCGTGCTCCTCTATGTTTA
CGCTTCCTGCCAGGATGCTGTTTTCGTCGCCTGTTGCAAAGGAGACGGGG
ACACCACAACCACAGGCTTGCCTTCCCCCGCTCAACAACCAGCAGCGCCA
GTGACGCCAGCACTAGCACCAGCACCAGATCCAGCGGCTGAACGGATTAC
AACGGCAGCAGCACCAGACCAAACCCGCGTCTCACCAGGTGCCAACAGGC
GATATCTTCCAGCAACTCTTCTGCACCGAGTTCTAGTGGAGCAGGAGCTG
GAGACACCAGCAGCGACAAGGGTGGGGAATGCTGCTACGCGTGCAACAAC
GAACTTTCTACCGCCGTACCAATATTTTTCTGCCGGGGTTGCGGCAAGCT
CTCCCACGGGGATTGTACAGGCTACCGCCTCGATTCAAGGCAATCCCCCG
CGCCCGATTGGGTTTGTCCCTGCTGCCCGGATGGCGAGCGTGGGCCTATC
GAGATATGCGTTCACCTGTCCTTGAAGGGCCTGGGGTCGGTAAAGCAAAC
CCTAGGAAACCAGCCGTGGTGCCCGATCTGCTTAAAGACAATCGGGCCCT
GGGTAACACGATGGGTACCAGGTGTTCGACGAAGTGCCGGGGTTGCGGGT
TCCAGACCCACAACCATTGCATTGCCGAGCTGCAGGTCGGACCAGATGGC
AGGTGGCCGTGCGACGAGTGCCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20058:816..3189+

>mRNA_Ecto-sp13_S_contig20058.6550.1 ID=mRNA_Ecto-sp13_S_contig20058.6550.1|Name=mRNA_Ecto-sp13_S_contig20058.6550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20058:816..3189+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTTGGTGTCCGAGAAAACTTGCATCGCCAAGATTCGAATGCGGGAGG
GACAGACGTTGCTGTAGATATTCTACTTTCCTTCGGCGGAGAACCATGCG
CTGTATCCCCCGGCGACTTGCCTCTAGATTTGGCTCCTCAAGGTACCAAG
GATGCTGTTTTCGTCGCCTGTTGCAAAGGAGACGGGGACACCACAACCAC
AGGCTTGCCTTCCCCCGCTCAACAACCAGCAGCGCCAGTGACGCCAGCAC
TAGCACCAGCACCAGATCCAGCGGCTGAACGGATTACAACGGCAGCAGCA
CCAGACCAAACCCGCGTCTCACCAGGTGCCAACAGGCGATATCTTCCAGC
AACTCTTCTGCACCGAGTTCTAGTGGAGCAGGAGCTGGAGACACCAGCAG
CGACAAGGGTGGGGAATGCTGCTACGCGTGCAACAACGAACTTTCTACCG
CCGTACCAATATTTTTCTGCCGGGGTTGCGGCAAGCTCTCCCACGGGGAT
TGTACAGGCTACCGCCTCGATTCAAGGCAATCCCCCGCGCCCGATTGGGT
TTGTCCCTGCTGCCCGGATGGCGAGCGTGGGCCTATCGAGATATGCGTTC
ACCTGTCCTTGA
back to top