mRNA_Ecto-sp13_S_contig20007.6526.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20007.6526.1
Unique NamemRNA_Ecto-sp13_S_contig20007.6526.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: D7G2V0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2V0_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 3.540e-98
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 1
Query:    1 GIGLAIAEKLAGAPGHLCVLTSRTPSLGQKAVDDLKAGGLESVVYKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASMSGHLSILGSQDRRNAFTNPALTK 456
            GIGLAIA+KLAGAPGHLCVLTSRTP+LGQKAVDDLK  GLESVVYKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASM+GHLSILGSQDRRNAFTNPALTK
Sbjct:   42 GIGLAIAKKLAGAPGHLCVLTSRTPALGQKAVDDLKEEGLESVVYKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASMAGHLSILGSQDRRNAFTNPALTK 193          
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: A0A7S2UVT3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVT3_9STRA)

HSP 1 Score: 158 bits (399), Expect = 5.090e-45
Identity = 80/156 (51.28%), Postives = 111/156 (71.15%), Query Frame = 1
Query:    1 GIGLAIAEKLAGAPGHLCVLTSRTPSLGQKAVDDLKAGGLES----VVYKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASMSGHLSILGSQDRRNAFTNPALTK 456
            GIG  +A KLA  P  +C++ +R  + GQ+A  ++   G  +     V+KQLDI D  SV+RF  E++ E+GR DVLVNNA IAFKG+DPTPF+ QA PTL+TNF+ T   T+ +LPL+R+S A R+VNVASMSGHL IL S +R++ F++ +LT+
Sbjct:   38 GIGKEVAIKLASTPNTICIVAARDMNRGQQAAQEVNIAGQTAGGGGAVFKQLDIADNTSVQRFMQEMQSEYGRLDVLVNNAAIAFKGADPTPFQYQAAPTLRTNFWATVQVTDALLPLLRQSPAARIVNVASMSGHLRIL-SHERQDIFSSSSLTR 192          
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: A0A836C9X3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X3_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.220e-44
Identity = 84/148 (56.76%), Postives = 101/148 (68.24%), Query Frame = 1
Query:    1 GIGLAIAEKLAGAPGHLCVLTSRTPSLGQKAVDDLKAGGLESVVYKQLDIGDPASVERFASELEQEF-GRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASMSGHLSILGSQDRRNAFTN 441
            GIGL IA KL    G LCVLT+R    G+ A + L + G   V ++QLDI DP S ERFA + EQEF    D LVNNAG AFKGSDPTPF +QAEPT+  NFF T A TE++LPLV++S  GR+VNVASMSGHL I+   + R  F +
Sbjct:   14 GIGLEIARKLGREQGWLCVLTARDEERGRSAAESLLSEGA-GVRFRQLDISDPDSRERFAKDAEQEFTAGIDALVNNAGFAFKGSDPTPFAEQAEPTMDINFFSTVATTERLLPLVKRSPHGRIVNVASMSGHLRIVPDAELRAKFAS 160          
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: A0A7S0XB88_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XB88_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.660e-42
Identity = 75/151 (49.67%), Postives = 111/151 (73.51%), Query Frame = 1
Query:    1 GIGLAIAEKLAGAPGHLCVLTSRTPSLGQKAVDDLKAGGLESVVYKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASMSGHLSILGSQDRRNAFTNPALT 453
            GIG  I +KL+   G+  +L +R  +LG +A ++L++ GL+ V +++LDI    S++ F ++L+ ++G+CDVLVNNA IAFKGSDPTPFK QAEPT+KTN+F T + T+ MLPL++ S + R+VNVAS +G L IL S +R+  FT+ +LT
Sbjct:   31 GIGYEIVKKLSSI-GYKTILAARNVNLGSQAANNLRSQGLD-VEFRELDISSDESIKAFVNKLQSDYGKCDVLVNNAAIAFKGSDPTPFKLQAEPTIKTNYFGTLSLTKLMLPLLQNSTSPRIVNVASQAGALGILPSNERKKFFTSESLT 179          
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: A0A7S3GV84_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV84_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.590e-38
Identity = 73/147 (49.66%), Postives = 99/147 (67.35%), Query Frame = 1
Query:    1 GIGLAIAEKLAGAPGHLCVLTSRTPSLGQKAVDDLKAGGLESVVYKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASMSGHLSILGSQDRRNAFTN 441
            GIG  I +KL GA G   +L  R   LGQ+A  +LK  G + V Y+ LDI D  S+ RF+ ++  E+G  D+LVNNA IAFK SDPTPFK+Q  PT++ NFF T   TE ++PL++K+++ R+VNVAS SGHL IL S++ +  F N
Sbjct:   12 GIGYEICKKL-GAAGVKIILACRNEVLGQEAAANLKELGYD-VEYRNLDISDDWSIARFSRDISDEYGHVDILVNNAAIAFKESDPTPFKEQTLPTIEPNFFGTMRITESLMPLLQKAESPRIVNVASQSGHLRILKSEELKERFVN 156          
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: A0A6U0UDZ4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UDZ4_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.780e-38
Identity = 82/167 (49.10%), Postives = 111/167 (66.47%), Query Frame = 1
Query:    1 GIGLAIAEKLAGA-------PGHLCVLTSRTPSLGQKAVDDLKAGGLE--SVV-YKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKS----DAG-RVVNVASMSGHLSILGSQDRRNAFTNPALTK 456
            GIGL I  + A A       P    +L +R  + G+ AV+ L+A G +  SVV +KQLDI D  S +RF +++++EFG+ D LVNNA IAFKGSDPTPF++Q EPTL  NF+ T AF ++MLPL++ +    DA  R+VNVASMSGHL IL S + R+ F   +LT+
Sbjct:   14 GIGLNIVTRFAHAAAEALAPPLPTVLLCARDAARGEAAVEQLRANGGDPASVVKFKQLDISDEESRKRFVADVQEEFGKVDCLVNNAAIAFKGSDPTPFEEQTEPTLNVNFYSTCAFIDEMLPLLQAAAEAEDAKPRIVNVASMSGHLRILKSNELRDQFARDSLTR 180          
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: A0A6U0U495_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0U495_9STRA)

HSP 1 Score: 139 bits (350), Expect = 8.490e-38
Identity = 82/167 (49.10%), Postives = 111/167 (66.47%), Query Frame = 1
Query:    1 GIGLAIAEKLAGA-------PGHLCVLTSRTPSLGQKAVDDLKAGGLE--SVV-YKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKS----DAG-RVVNVASMSGHLSILGSQDRRNAFTNPALTK 456
            GIGL I  + A A       P    +L +R  + G+ AV+ L+A G +  SVV +KQLDI D  S +RF +++++EFG+ D LVNNA IAFKGSDPTPF++Q EPTL  NF+ T AF ++MLPL++ +    DA  R+VNVASMSGHL IL S + R+ F   +LT+
Sbjct:   14 GIGLNIVTRFAHAAAEALAPPLPTVLLCARDAARGEAAVEQLRANGGDPASVVKFKQLDISDEESRKRFVADVQEEFGKVDCLVNNAAIAFKGSDPTPFEEQTEPTLNVNFYSTCAFIDEMLPLLQAAAEAEDAKPRIVNVASMSGHLRILKSNELRDQFARDSLTR 180          
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: A0A7S4D6Z1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6Z1_HETAK)

HSP 1 Score: 132 bits (332), Expect = 2.440e-36
Identity = 64/118 (54.24%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 GIGLAIAEKLAGAPGHLCVLTSRTPSLGQKAVDDLKAGGLESVVYKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKS 354
            GIGL IA K   A   LC+LT+R   LG +A ++L   GL +VV+KQLDI D +SVE FA+++E+E+G+ D LVNNA IAFK +DPTPF +QAEPT++ N+F TA   + +LPLVR++
Sbjct:   49 GIGLEIARKFGAAEDTLCILTARNADLGSRACEELAKEGL-NVVFKQLDIDDSSSVEAFATQMEEEYGKIDTLVNNAAIAFKAADPTPFSEQAEPTVRVNYFGTARVLDALLPLVRRA 165          
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: A0A7S0DJ78_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DJ78_9EUKA)

HSP 1 Score: 128 bits (322), Expect = 7.270e-35
Identity = 72/153 (47.06%), Postives = 98/153 (64.05%), Query Frame = 1
Query:    1 GIGLAIAEKLAGAPGHLCVLTSRTPSLGQKAVDDLKAGGLESVVYKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASMSGHLSILG-SQDRRNAFTNPALTK 456
            GIG  IA KLA   G   +LT+R+   G  A D LK  GLE V +  L+I D  S+  F+  + +E+G  D+LVNNA +AFK SDPTPFK QA PTLKTN++ T    E ++P++R  + G VVNVAS +G  ++ G S++RR  F +P +TK
Sbjct:    8 GIGFEIARKLAEQKGVKTILTARSTERGAAACDALKKDGLE-VQFHLLNIDDKKSIATFSEWIRKEYGGLDILVNNAAVAFKSSDPTPFKGQAAPTLKTNYWGTLDVCEALIPIMR--EGGNVVNVASRAGTSALKGMSEERRVEFLDPKMTK 157          
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Match: A0A482STQ6_9ARCH (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STQ6_9ARCH)

HSP 1 Score: 128 bits (322), Expect = 2.520e-34
Identity = 72/151 (47.68%), Postives = 99/151 (65.56%), Query Frame = 1
Query:    1 GIGLAIAEKLAGAPGHLCVLTSRTPSLGQKAVDDLKAGGLESVVYKQLDIGDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTNFFDTAAFTEKMLPLVRKSDAGRVVNVASMSGHLSILGSQDRRNAFTNPALT 453
            GIGL IA+KL+    H  VL  R       A++  K  GL++  ++ LDI D  S+  F   +E++FG+ D+LVNNA IAFK SDPTPF+ QA PT+ TN+F T   T+ +LPL+RK+   R+VNVAS +GHL I+ S+  R+ FT+P LT
Sbjct:   28 GIGLEIAKKLSENGVHT-VLACRNIEHEGIALEHFKHLGLDAE-FRILDISDRNSIAHFVHGIERDFGKIDILVNNAAIAFKASDPTPFEQQARPTVHTNYFGTLWTTQALLPLLRKATNPRIVNVASSAGHLRIIPSKQIRDQFTSPDLT 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20007.6526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2V0_ECTSI3.540e-9896.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UVT3_9STRA5.090e-4551.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836C9X3_9STRA2.220e-4456.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0XB88_9STRA2.660e-4249.67Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S3GV84_9STRA1.590e-3849.66Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6U0UDZ4_9STRA2.780e-3849.10Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U0U495_9STRA8.490e-3849.10Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4D6Z1_HETAK2.440e-3654.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0DJ78_9EUKA7.270e-3547.06Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A482STQ6_9ARCH2.520e-3447.68SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20007contigEcto-sp13_S_contig20007:519..3037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score294.3
Seed ortholog evalue3.3e-77
Seed eggNOG ortholog2880.D7G2V0
Model size459
KEGG rclassRC00154,RC00205,RC00823,RC01491
KEGG koko:K00079
KEGG ReactionR02581,R02975,R04285,R09420
KEGG Pathwayko00590,ko00790,ko00980,ko01100,ko05204,map00590,map00790,map00980,map01100,map05204
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
Ec32 ortholog descriptionShort-chain dehydrogenase/reductase SDR
Ec32 orthologEc-07_005600.1
EC1.1.1.184,1.1.1.189,1.1.1.197
Cds size459
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463007.775781-CDS-Ecto-sp13_S_contig20007:518..6271681463007.775781-CDS-Ecto-sp13_S_contig20007:518..627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20007 519..627 -
1681463007.7868392-CDS-Ecto-sp13_S_contig20007:1118..11991681463007.7868392-CDS-Ecto-sp13_S_contig20007:1118..1199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20007 1119..1199 -
1681463007.795978-CDS-Ecto-sp13_S_contig20007:2177..22751681463007.795978-CDS-Ecto-sp13_S_contig20007:2177..2275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20007 2178..2275 -
1681463007.806123-CDS-Ecto-sp13_S_contig20007:2866..30371681463007.806123-CDS-Ecto-sp13_S_contig20007:2866..3037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20007 2867..3037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20007.6526.1prot_Ecto-sp13_S_contig20007.6526.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20007 519..3037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20007.6526.1

>prot_Ecto-sp13_S_contig20007.6526.1 ID=prot_Ecto-sp13_S_contig20007.6526.1|Name=mRNA_Ecto-sp13_S_contig20007.6526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
GIGLAIAEKLAGAPGHLCVLTSRTPSLGQKAVDDLKAGGLESVVYKQLDI
GDPASVERFASELEQEFGRCDVLVNNAGIAFKGSDPTPFKDQAEPTLKTN
FFDTAAFTEKMLPLVRKSDAGRVVNVASMSGHLSILGSQDRRNAFTNPAL
TK*
back to top

mRNA from alignment at Ecto-sp13_S_contig20007:519..3037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20007.6526.1 ID=mRNA_Ecto-sp13_S_contig20007.6526.1|Name=mRNA_Ecto-sp13_S_contig20007.6526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20007:519..3037- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATCGGTCTCGCCATCGCCGAGAAGCTCGCGGGTGCCCCCGGGCACTT GTGCGTTCTGACCTCCCGTACGCCATCCCTCGGCCAGAAGGCGGTGGACG ACCTCAAGGCGGGGGGGCTGGAGTCGGTGGTCTACAAGCAGCTGGACATC GGAGACCCGGCCTCCGTCGAGGTGGGTGCTTTTGTGGTACTCTTTTTTTG TTATTTCTACAGTACAGTAAGAGCAACCTTGTTCCTCAAATAGGCAGGGG TGGTGGCCGAGAATTGAGAGAGAATCACGCGTACGTGTAACGATGACGGC CGTTTTGTTTATGTGTTTTCACCGTAGTCGGCCTCACATAGCGGGGTAAT GCTGGGTGGGCAGTACGAGAGACCACCCGAGAACACCCAGAGGAAAGGGC GGCAAAGAAAGGTTGCAGTGAATCTCCTCGCCGCTCGACCGAGATGGAGG AGTGTTGTGTTGTTGCAGGGAAATAAGCGCTGATCTAAAGTGATCAGAGA AAAAATAAAATAAAAAGGTAAGGGGATACCGTTGGGCGATGAGGAACGGT AGTTTGAAGGCGACGGACGCGAGTCTCCCCATCTTGGACATCATTCGTCT CGCCTCTGCTCTGCTGCCATTCGTTGTCATAGTGTACTCCGTATTTTCTC GTGTTTCGTGGCTTGCCCCCGTGACCCTGTATAGTACAGCAGTGCTTTCG AGACCTGCTTGCGCACCGACCCTGTTTTGTTTTTTTTTGTCTGCTGCTCC TTTTTTTCGAAGCGCTTCGCCTCGGAGCTGGAGCAGGAGTTCGGAAGGTG CGACGTCCTCGTCAACAATGCTGGGATCGCCTTCAAGGGTTCAGATCCGA CCCCGTTCAAGTGAGAAGAGGGGAAAAGCGAGAGAGCGAGGGGGAGAGAG GCAACGAGGCAGAGAGTCAGGCACTGAGAGTCAGAGCTAGCTGTGTGCCA ACGCTGTCGTGGTGTGGTTCCTACGTCCCCTCTCTCTTTGTCGCCTTCAG CGTTGTCTCTCACGTACAACTCTTTCTAACATTCGAAGACAGGAAAATTG TGCTGCGTGCCTGAACTTTGAAACATATTCCACCCTGTTTGCAAGCCTCT CCATCATGGTCTGCCGGGCTTGTTTCTAGTACAACAGGAAACCCGAAACG TTGTGTGGTGTGTTTTCCCCCCTTTAAACAAAATTCTCATGGAGATATTG GGGAAAAGACCATTCTTTGGAACTCTTCCAGCTATTTCCAGAATTATCGG TCATCTTGACCAGGAAGTTGTTGGTAGACCACGACGGGCTTATTCGTGGG CAGCAACAGGATTGTTAATGAAGGAGAGGCACACCGGAGGAAAGACAACG CTGCATTTTTTTGGTTTCGAAGCGGTGCTTTATCGCGAAAGCCACTGAAT GGAGAGAATTCCCAGCGGCTGTTTCTGATTGTGCGGGCCGCATATGGATG GATAGGCGGGCCACGCAACCTGAGTTTAACGGTATCGGAACGTGCGAAGC GCGCCATCATTAGGGGAGTTACTTAAAACTCCAGGCTCATGAAATAATGA ATCCAGGAATCTGACCATGCTGAGGACAGGTGCTCGATCATGGAGCCTAT CCGAGGCCCTATGTAGTCGATGCCGCGTTGCCTATTTCCCCCGAGAGAGA AACAGAAGCGAGCGGCGGGCGATACAACTTGTTCTCAAGTGGTGGGGCGC TCTAAACTTCACTACTTTCAAGGATTTCTTGAGATCTACGACCCGTGTTT GGAAGCGATCATCTGAATAGGTTTGCCGCCCGTTTGACTGAACCTTCACC CTTGACCACTCTCTCTCGTTTCGTGCACTGCTGTCCAGGGATCAAGCAGA GCCGACGCTGAAGACGAACTTTTTCGACACCGCTGCGTTCACGGAGAAAA TGCTCCCGCTCGTGAGAAAGTGAGGCGGCCTCTTGGAACATATCAGGGGC TCGACCCCCCCCCCCCCCCCCCCCCCCAGCCGCACCCACTGGTGTGGTCA CGCGAGTTTTCGTTCTGTTGTGGTTGTNNNNNNNNNNTTTTTGTCTCCTC TTCGTTTCGAGAGAAAAATTGCCCGGGTGGGGATAAAGGGGGGGGGCTTT TTTTATTTCTGAGGGGGGGCCCCCCCCCCCCCCCCCCCCCCCCCGGGAGC AGTCTTTGTCGTGCCTGTTGCCGTTTTACTTCATGGCTGGTATGGTTTCT TCTCGTTGAACTTTTGATTATCATAACTATTGATGCAATCGTTATTGCTG CACATTGGTGACGGGTTTTTTTTCGCCTTTGTCTTGTCGCCCCCTCTCTC TTGTTGAGTTCTTGTTGTTGATTGGTCCGATACTGTGGAGGTGTATTTTT CTCTGAGCGAAACAACGTTCTCATGTAGCTCGAATGATTGTGATGGTGGG CATCTGACAGGAGCGACGCCGGCCGAGTTGTCAACGTTGCCAGCATGTCC GGCCACCTGTCCATCTTGGGGAGCCAGGACCGAAGGAATGCCTTCACCAA TCCCGCTCTCACCAAGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20007:519..3037-

>mRNA_Ecto-sp13_S_contig20007.6526.1 ID=mRNA_Ecto-sp13_S_contig20007.6526.1|Name=mRNA_Ecto-sp13_S_contig20007.6526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20007:519..3037- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATCGGTCTCGCCATCGCCGAGAAGCTCGCGGGTGCCCCCGGGCACTT
GTGCGTTCTGACCTCCCGTACGCCATCCCTCGGCCAGAAGGCGGTGGACG
ACCTCAAGGCGGGGGGGCTGGAGTCGGTGGTCTACAAGCAGCTGGACATC
GGAGACCCGGCCTCCGTCGAGCGCTTCGCCTCGGAGCTGGAGCAGGAGTT
CGGAAGGTGCGACGTCCTCGTCAACAATGCTGGGATCGCCTTCAAGGGTT
CAGATCCGACCCCGTTCAAGGATCAAGCAGAGCCGACGCTGAAGACGAAC
TTTTTCGACACCGCTGCGTTCACGGAGAAAATGCTCCCGCTCGTGAGAAA
GAGCGACGCCGGCCGAGTTGTCAACGTTGCCAGCATGTCCGGCCACCTGT
CCATCTTGGGGAGCCAGGACCGAAGGAATGCCTTCACCAATCCCGCTCTC
ACCAAGTAA
back to top