mRNA_Ecto-sp13_S_contig200.6516.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig200.6516.1
Unique NamemRNA_Ecto-sp13_S_contig200.6516.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig200.6516.1 vs. uniprot
Match: D7FKT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT1_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 2.450e-148
Identity = 261/280 (93.21%), Postives = 265/280 (94.64%), Query Frame = 1 
Query:    1 KLQPKVLAAEGNKGVPLDPALADLLQCLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPPXXXXTPRGLADAXXXXLSPRDGPSGHPSQHGRPQRDRKEEERAGRRSRADKARESRHARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRTGRADRGRLEDHIKSRSSSPRGGKRRSPANGRREXXXXXXXXXXXXXXXXXXXXXX----GVTRSXEREWQGGERSGRDPRRGSR 828
            KL+PKVLAAEGNKGVPLDPALADLLQ LLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGP XXXX  RGLADAXXXXLSPR GPSGHPSQHGRPQRDRKEEERAGRRS ADKARESR ARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGR GRADRGRLEDH+K+RS SPRGG+RRSPANGRREXXXXXXXXXXXXXXXXXXXXXX    GVTRSX  EWQGGERSGRDPRRGSR
Sbjct:    6 KLKPKVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREXXXXXXXXXXXXXXXXXXXXXXXXXXGVTRSXXXEWQGGERSGRDPRRGSR 285
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BLAST of mRNA_Ecto-sp13_S_contig200.6516.1 vs. uniprot
Match: D8LK48_ECTSI (Possible Cdc2-related protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK48_ECTSI)

HSP 1 Score: 419 bits (1077), Expect = 2.110e-131
Identity = 258/276 (93.48%), Postives = 261/276 (94.57%), Query Frame = 1 
Query:   13 KVLAAEGNKGVPLDPALADLLQCLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPPXXXXTPRGLADAXXXXLSPRDGPSGHPSQHGRPQRDRKEEERAGRRSRADKARESRHARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRTGRADRGRLEDHIKSRSSSPRGGKRRSPANGRREXXXXXXXXXXXXXXXXXXXXXX----GVTRSXEREWQGGERSGRDPRRGSR 828
            KVLAAEGNKGVPLDPALADLLQ LLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGP XXXX  RGLADAXXXXLSPR GPSGHPSQHGRPQRDRKEEERAGRRS ADKARESR ARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGR GRADRGRLEDH+K+RS SPRGG+RRSPANGRREXXXXXXXXXXXXXXXXXXXXXX    GVTRSX  EWQGGERSGRDPRRGSR
Sbjct: 1623 KVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRAGRADRGRLEDHVKTRSPSPRGGRRRSPANGRREXXXXXXXXXXXXXXXXXXXXXXXXXXGVTRSXXXEWQGGERSGRDPRRGSR 1898
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig200.6516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKT1_ECTSI2.450e-14893.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LK48_ECTSI2.110e-13193.48Possible Cdc2-related protein kinase n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig200contigEcto-sp13_S_contig200:258..1324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score421.4
Seed ortholog evalue3.3e-115
Seed eggNOG ortholog2880.D8LK48
Model size831
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K00924,ko:K06101,ko:K11423,ko:K16675
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04391,map00310,map04391
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.uterine gland development
EggNOG OGsCOG2940@1,KOG0594@1,KOG0594@2759,KOG1083@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_002420.1
EC2.1.1.43,2.3.1.225
Cds size831
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463006.8838131-CDS-Ecto-sp13_S_contig200:257..4311681463006.8838131-CDS-Ecto-sp13_S_contig200:257..431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 258..431 +
1681463006.89695-CDS-Ecto-sp13_S_contig200:667..13241681463006.89695-CDS-Ecto-sp13_S_contig200:667..1324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig200 668..1324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig200.6516.1prot_Ecto-sp13_S_contig200.6516.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig200 258..1324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig200.6516.1

>prot_Ecto-sp13_S_contig200.6516.1 ID=prot_Ecto-sp13_S_contig200.6516.1|Name=mRNA_Ecto-sp13_S_contig200.6516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp
KLQPKVLAAEGNKGVPLDPALADLLQCLLKLDSRHRLSARDALASPYFAP
RHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPPPPPP
TPRGLADAPPPPLSPRDGPSGHPSQHGRPQRDRKEEERAGRRSRADKARE
SRHARGRGVATPSPPREGLHISVQLPLKPDPPGGYGAVSVERTGRTGRAD
RGRLEDHIKSRSSSPRGGKRRSPANGRREREREWEWERERRGRKRDRERD
RGVTRSREREWQGGERSGRDPRRGSR*
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mRNA from alignment at Ecto-sp13_S_contig200:258..1324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig200.6516.1 ID=mRNA_Ecto-sp13_S_contig200.6516.1|Name=mRNA_Ecto-sp13_S_contig200.6516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1067bp|location=Sequence derived from alignment at Ecto-sp13_S_contig200:258..1324+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAACTGCAACCGAAGGTTCTTGCGGCGGAAGGGAACAAAGGCGTTCCCCT
CGACCCAGCGCTGGCGGACTTGTTGCAATGTCTCCTCAAGCTCGACTCGC
GGCATCGCTTGAGTGCGAGGGACGCCCTGGCGAGCCCTTACTTTGCGCCC
AGGCATGGGCAGCATGACGAAAGGGTGAGAGCACTGAGGAGTCCCGGTTA
GATTTTTTTGTTGTGTTGAACTTGCCGCTGCAGAGCTGTACAGATAATCC
TGCACACAACCCGGAGAAAATGCTGTTGAAGCTGCTGGCTCTGCCACCGA
TCGATTTCCTATCGTGTTTCAACCTCGTAACCTCGTCAATATGTATATCC
TTTTCACGGCCTCCCTCTCGATTCTTGACACACATGACATGACGTGACAC
GGGCGTGCAGCTGGATGCGTGGGTTACCTTGCGGGGTGACCTAGATAAGG
TGCAGATGGGAGTGGCTACGCCGGATCAGCTCCGCGGCACGTTCGCCGCC
GCCAATGCGCCCACGGGGCCGCCACCTCCACCGCCCACGCCCAGAGGTCT
CGCCGATGCTCCCCCCCCACCGCTTTCACCTAGAGACGGCCCTTCAGGAC
ACCCTAGCCAGCACGGCCGTCCACAGAGGGATAGGAAGGAGGAGGAGCGC
GCGGGCCGCCGCTCGCGCGCCGACAAGGCACGCGAAAGCAGGCATGCGCG
AGGAAGGGGCGTCGCGACCCCTTCCCCGCCACGCGAGGGTCTCCACATCT
CGGTACAGCTTCCCCTGAAGCCTGATCCACCAGGAGGGTATGGCGCAGTG
TCGGTAGAGAGGACTGGCAGGACGGGGCGGGCAGATCGGGGACGCCTCGA
GGATCACATCAAAAGCCGTAGCTCAAGCCCCAGGGGGGGTAAGAGGCGGA
GCCCGGCGAACGGCAGGAGGGAGCGGGAGCGGGAGTGGGAGTGGGAACGC
GAACGAAGGGGAAGAAAAAGGGACAGAGAGAGGGACAGGGGTGTAACGAG
GTCGCGCGAGCGCGAGTGGCAGGGCGGTGAACGGTCGGGCAGGGACCCGC
GCCGTGGTAGTCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig200:258..1324+

>mRNA_Ecto-sp13_S_contig200.6516.1 ID=mRNA_Ecto-sp13_S_contig200.6516.1|Name=mRNA_Ecto-sp13_S_contig200.6516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig200:258..1324+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAACTGCAACCGAAGGTTCTTGCGGCGGAAGGGAACAAAGGCGTTCCCCT
CGACCCAGCGCTGGCGGACTTGTTGCAATGTCTCCTCAAGCTCGACTCGC
GGCATCGCTTGAGTGCGAGGGACGCCCTGGCGAGCCCTTACTTTGCGCCC
AGGCATGGGCAGCATGACGAAAGGCTGGATGCGTGGGTTACCTTGCGGGG
TGACCTAGATAAGGTGCAGATGGGAGTGGCTACGCCGGATCAGCTCCGCG
GCACGTTCGCCGCCGCCAATGCGCCCACGGGGCCGCCACCTCCACCGCCC
ACGCCCAGAGGTCTCGCCGATGCTCCCCCCCCACCGCTTTCACCTAGAGA
CGGCCCTTCAGGACACCCTAGCCAGCACGGCCGTCCACAGAGGGATAGGA
AGGAGGAGGAGCGCGCGGGCCGCCGCTCGCGCGCCGACAAGGCACGCGAA
AGCAGGCATGCGCGAGGAAGGGGCGTCGCGACCCCTTCCCCGCCACGCGA
GGGTCTCCACATCTCGGTACAGCTTCCCCTGAAGCCTGATCCACCAGGAG
GGTATGGCGCAGTGTCGGTAGAGAGGACTGGCAGGACGGGGCGGGCAGAT
CGGGGACGCCTCGAGGATCACATCAAAAGCCGTAGCTCAAGCCCCAGGGG
GGGTAAGAGGCGGAGCCCGGCGAACGGCAGGAGGGAGCGGGAGCGGGAGT
GGGAGTGGGAACGCGAACGAAGGGGAAGAAAAAGGGACAGAGAGAGGGAC
AGGGGTGTAACGAGGTCGCGCGAGCGCGAGTGGCAGGGCGGTGAACGGTC
GGGCAGGGACCCGCGCCGTGGTAGTCGTTGA
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