mRNA_Ecto-sp13_S_contig19881.6457.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI) HSP 1 Score: 225 bits (574), Expect = 2.940e-66 Identity = 130/215 (60.47%), Postives = 134/215 (62.33%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQV--------------------------------------------------------------------------------CAAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQ+ CAAGVIENVCLLGAPVGA+AARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKV AVGVEN+DLSS+VGSNHFNYNRKMPEILELLDLD
Sbjct: 712 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQMMEXXXXXQDHWGCAAAGSSATTAGRGPPRSKMTRLRNAVTPDNRGKSKAGLNGVGVSAGSSXXXXXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEILELLDLD 926
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: A0A835Z4D9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D9_9STRA) HSP 1 Score: 155 bits (391), Expect = 1.010e-43 Identity = 83/155 (53.55%), Postives = 104/155 (67.10%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQ-------------------VC-AAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QG RPVTL+GTS+GARL+F+CLEE+ RRHELWE C AAG+IEN LLGAPVG S RWERVAR+ HGR+INGY K D I+GL++R + LS+SV+G+Q + + VEN DLS + S H Y ++PEI+ LL LD
Sbjct: 91 QGTRPVTLIGTSIGARLMFSCLEEMVRRHELWEASGKQRASPPRRGRKGGGMGGPCNAAGIIENAVLLGAPVGVSPKRWERVARVVHGRLINGYFKKDGILGLIYRIRRLSVSVAGLQPIASRAVENADLSPAL-SQHMQYCSRVPEIMALLQLD 244
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: A0A2P4Y8C6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8C6_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.280e-30 Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQVCAAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QG RPVTL+G +GARLIF+CL+E+A+ + E G++EN LLG+PV + W R+ GR+INGYS D ++G+++R + SL+ +GI + GVEN+DLS I+G H Y K+ I++LL+L+
Sbjct: 83 QGLRPVTLIGYGMGARLIFSCLKELAKSDSINES----CGIVENAVLLGSPVPTAREDWANARRVVSGRLINGYSDKDWMLGVMYRYQGWSLNSAGIAPIDIAGVENVDLSEIIGG-HLEYKSKIGAIMDLLELE 212
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: A0A7C8ZUG8_OPUST (Uncharacterized protein n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZUG8_OPUST) HSP 1 Score: 112 bits (280), Expect = 6.500e-29 Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQVCAAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QG RPVTL+G SLGAR+IF CLE +++ AA ++E V LLGAP+ WE V ++ GR +N +S D I+G+ FRA L+ ++GIQ + G+EN+D S ++ H +Y P+IL+ LDLD
Sbjct: 19 QGNRPVTLIGYSLGARVIFKCLEFLSKSDYKGASTCLAANIVERVVLLGAPIKIKDENWEAVRKIVAGRFVNVFSHHDWILGIAFRASLLTKGLAGIQAIDVPGIENVDASDVI-EGHSSYLWSTPQILDQLDLD 152
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: A0A662WLI0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WLI0_9STRA) HSP 1 Score: 120 bits (300), Expect = 6.540e-29 Identity = 62/135 (45.93%), Postives = 91/135 (67.41%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQVCAAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QG RPVTLVG +GARLIF+CL+E+A+ E +Q C G++EN LLG+PV + W RM GR+INGYS+ D ++G+++R + +L+ +GI + GVEN+DLSS++G H Y K+ I++LL L+
Sbjct: 546 QGLRPVTLVGYGMGARLIFSCLKELAKGEE--PDQSC--GIVENAVLLGSPVPMARDDWANARRMVSGRLINGYSEKDWMLGVMYRYQGWALNSAGIAPLDLAGVENVDLSSLIGG-HLEYKSKIGAIMDLLQLE 675
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: A0A3R7IQF8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IQF8_9STRA) HSP 1 Score: 119 bits (298), Expect = 7.680e-29 Identity = 61/135 (45.19%), Postives = 90/135 (66.67%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQVCAAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QG RPVTLVG +GARLIF+CL+E+A +++ C G++EN LLG+PV + A W RM GR+INGYS+ D ++G+++R + +L+ +GI + GVEN+DLS I+G H Y K+ I++LL L+
Sbjct: 412 QGLRPVTLVGYGMGARLIFSCLKELANSES--QDESC--GIVENAVLLGSPVPMARADWINARRMVSGRLINGYSEKDWMLGVMYRYQGWALNSAGIAPIDIAGVENVDLSEIIGG-HLEYKSKIGAIMDLLQLE 541
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: A0A2Z6MYF1_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MYF1_TRISU) HSP 1 Score: 112 bits (279), Expect = 1.030e-28 Identity = 64/135 (47.41%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQVCAAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QG RPVTLVG SLGAR+IF CLE +A E + AG++E V LLGAP+ WE +M GR IN YS +D +G+ FRA LS +SGIQ V G+EN+D++ ++ H +Y P+ILE L+LD
Sbjct: 21 QGNRPVTLVGFSLGARVIFKCLEFLA------ESKGDNAGLVERVVLLGAPISIGDENWEVARKMVAGRFINAYSTNDWTLGITFRASLLSQGLSGIQPVDLPGIENVDVTHLI-EGHSSYLWMAPKILEQLELD 148
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: A0A5B6YUX1_DAVIN (Putative transmembrane and coiled-coil domain-containing protein 4-like n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YUX1_DAVIN) HSP 1 Score: 112 bits (281), Expect = 1.330e-28 Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQVCAAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QG RPVTL+G SLGAR+IF CLE +A R C AG++E V LLGAPV +WE ++ GR +N YS +D +G+ FRA LS ++GIQ V GVEN+D++ ++ S H +Y ILE L+LD
Sbjct: 56 QGNRPVTLIGFSLGARVIFKCLEYLAERGG-----DCEAGLVERVVLLGAPVSIKDEKWENARKIVAGRFVNAYSTNDWTLGIAFRASLLSQGLAGIQPVEVPGVENVDVTQLIES-HSSYIGTTKLILEQLELD 184
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: A0A7I4D206_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4D206_PHYPA) HSP 1 Score: 118 bits (295), Expect = 2.990e-28 Identity = 61/135 (45.19%), Postives = 91/135 (67.41%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQVCAAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QG RPVTL+G SLGAR+IFACLEE+A+ G++E V LLGAP+ + RWE+ ++ GR IN YS SD ++G+V+RA LS ++G+Q V G+EN+D++ +V + H +Y +K +I++ LD+D
Sbjct: 512 QGNRPVTLIGFSLGARVIFACLEELAKEGNQ-------GGIVERVVLLGAPLILNKPRWEKARQVVAGRFINAYSTSDWMLGVVYRANFLSQGLAGLQAVDVPGIENVDVTDLV-NGHSSYLKKAGDIVQALDID 638
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Match: A0A7I4DX38_PHYPA (Uncharacterized protein n=6 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DX38_PHYPA) HSP 1 Score: 118 bits (295), Expect = 3.080e-28 Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 1
Query: 1 QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQVCAAGVIENVCLLGAPVGASAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVPAVGVENIDLSSIVGSNHFNYNRKMPEILELLDLD 405
QG RPVTL+G +LGAR+IF CLEE+A+ + G++E V LLG P +WE V ++ GR +NG+SK+D ++G+V+RA +S VSG++ V G+EN+DLS +V H +Y + +IL+ +DLD
Sbjct: 510 QGSRPVTLIGFALGARVIFKCLEELAKHGDE------GLGIVERVFLLGTPEKVDKEKWESVRKVVAGRFVNGFSKNDWVLGVVYRASFMSFGVSGLKPVDVPGIENVDLSEVV-DGHSSYLTSLKQILQAIDLD 637 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19881.6457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19881.6457.1 >prot_Ecto-sp13_S_contig19881.6457.1 ID=prot_Ecto-sp13_S_contig19881.6457.1|Name=mRNA_Ecto-sp13_S_contig19881.6457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp QGCRPVTLVGTSLGARLIFACLEEIARRHELWEEQVCAAGVIENVCLLGAback to top mRNA from alignment at Ecto-sp13_S_contig19881:425..2112- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19881.6457.1 ID=mRNA_Ecto-sp13_S_contig19881.6457.1|Name=mRNA_Ecto-sp13_S_contig19881.6457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1688bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19881:425..2112- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19881:425..2112- >mRNA_Ecto-sp13_S_contig19881.6457.1 ID=mRNA_Ecto-sp13_S_contig19881.6457.1|Name=mRNA_Ecto-sp13_S_contig19881.6457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19881:425..2112- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |