mRNA_Ecto-sp13_S_contig1986.6445.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1986.6445.1
Unique NamemRNA_Ecto-sp13_S_contig1986.6445.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 516 bits (1329), Expect = 2.740e-180
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE
Sbjct:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 254
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BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: A0A7S2V227_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2V227_9STRA)

HSP 1 Score: 442 bits (1136), Expect = 5.990e-151
Identity = 211/250 (84.40%), Postives = 231/250 (92.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKVIRGQRKGKG +F SHT+ RKG VK RKLDYAERHGY+KGVVK ++HEPGRGAPLA V F+NPY+FK+D EL+VAVEGMYSG FIYCGKKA LT+GNIMPV +MPEGTVC +IEA  GDRGTFARCSGDYAV+ISHDE+KGTS++RLPSGSKKTI S CRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST+NRLASAG+KVGLIAARRTGRLRGI+
Sbjct:    1 MGKVIRGQRKGKGSVFVSHTKNRKGAVKFRKLDYAERHGYVKGVVKQILHEPGRGAPLAVVAFKNPYRFKKDTELMVAVEGMYSGMFIYCGKKAILTIGNIMPVGAMPEGTVCCNIEAAPGDRGTFARCSGDYAVVISHDEDKGTSRIRLPSGSKKTIKSLCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTSNRLASAGKKVGLIAARRTGRLRGIK 250
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BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: A0A835ZD66_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD66_9STRA)

HSP 1 Score: 441 bits (1135), Expect = 8.500e-151
Identity = 207/254 (81.50%), Postives = 235/254 (92.52%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKVIRG RKG+G +FTSHTRLRKGPVKLRKLDYAERHGYIKGVVK++IHEP RGAP+AK+QFQNPY++K+DNELIVA EGMY+G FIYCGKKA LTVGNI+PV SMPEG+V  ++E++ GDRG+ ARCSGDYAV+++HDE+KGT+K+RLPSGSKKTI S+CRAMVGI+AGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  RLASAGQKVGLIAARRTGRLRGI+   E
Sbjct:    1 MGKVIRGCRKGRGTVFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKEIIHEPARGAPIAKIQFQNPYEYKKDNELIVAAEGMYTGMFIYCGKKAQLTVGNILPVGSMPEGSVICNVESRPGDRGSLARCSGDYAVVVTHDEDKGTTKIRLPSGSKKTIFSNCRAMVGIIAGGGRTDKPLLKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTTKRLASAGQKVGLIAARRTGRLRGIKKTSE 254
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BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: F0YEL9_AURAN (Ribosomal_L2_C domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEL9_AURAN)

HSP 1 Score: 413 bits (1062), Expect = 9.270e-140
Identity = 193/250 (77.20%), Postives = 221/250 (88.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKVIRG RKGKG IFT+HTRLRKGPVKLRK DYAE+ GY+KGVVK ++HE GRGAP+AKVQFQN Y+F+RDNEL VA EG+Y G FIYCG KA L VGN++P+ ++PEGTV  + EA+ GDRG FARCSGDYAV+++HDE+ GT+KLRLPSG KKT+ S CRAM+GIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVIRGCRKGKGTIFTAHTRLRKGPVKLRKADYAEKTGYVKGVVKAIVHESGRGAPIAKVQFQNSYRFQRDNELFVAAEGLYEGAFIYCGAKAQLAVGNVLPISAIPEGTVICNAEARPGDRGAFARCSGDYAVVVTHDEDHGTTKLRLPSGGKKTVKSVCRAMIGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTKRICSAGKKVGLIAARRTGRLRGLK 250
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BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: A0A7R9UAP5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAP5_9STRA)

HSP 1 Score: 411 bits (1057), Expect = 5.490e-139
Identity = 187/250 (74.80%), Postives = 226/250 (90.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKV+RG RKGKG +F SHTRLRKGP KLR+LD++ER GY+KG+VK+++HEPGRGAPLA++QFQNPYK+++DNEL+V  EGMYSGQFI+CGKKA L+VGNI+P+  +PEGTV  ++E+ +GDRG   + SG Y V+I+ DE+KGTS++RLPSG+KKT+S+ CRAMVGIVAGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVVRGCRKGKGSVFKSHTRLRKGPAKLRRLDFSERTGYVKGLVKEILHEPGRGAPLARIQFQNPYKYQKDNELMVCAEGMYSGQFIFCGKKADLSVGNILPLGQLPEGTVVCNVESYIGDRGNLIKTSGGYGVVITQDEDKGTSRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250
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BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: A0A7S2WUG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG0_9STRA)

HSP 1 Score: 402 bits (1032), Expect = 5.660e-135
Identity = 190/254 (74.80%), Postives = 218/254 (85.83%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKV RGQRKGKG IF SHTRLR G VK R LDYAER G+ KGV+KD +HEPGRGAP+AKVQF N Y++KRDN L VAVEGMY+GQF+YCGKKA LTVGNI+P+ +MPEGT+  +IEAK GDRG  A+CSGDYAV+++HDE+KGT+++RLPSGSKKT+S+ CRA VGIVAGGGRTDKP+LKAGRA+HK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R   AG+K GLIAARRTGRL G +   E
Sbjct:   20 MGKVTRGQRKGKGSIFKSHTRLRVGEVKQRALDYAEREGFTKGVIKDFVHEPGRGAPVAKVQFHNAYRYKRDNNLFVAVEGMYTGQFLYCGKKAKLTVGNILPLGAMPEGTIVCNIEAKPGDRGKMAKCSGDYAVVVTHDEDKGTTRVRLPSGSKKTLSNKCRAAVGIVAGGGRTDKPLLKAGRAFHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTTRREDPAGKKAGLIAARRTGRLAGKKVIDE 273
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BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: I2CPH3_NANGC (Large subunit ribosomal protein L8e n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPH3_NANGC)

HSP 1 Score: 397 bits (1019), Expect = 2.960e-133
Identity = 185/254 (72.83%), Postives = 222/254 (87.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIRTEKE 762
            MGKVIR  RKG GGIF SHT+L K PVKLRKLDYAE+HGYIKGVVK+++HE GRGAP+A+VQF+N Y+FKRD E  VAVEG+YSGQFI+ GKKA+L +GN++P+  +PEGTV S++EA+ GDRG+FAR SG YAV+++ DE++GT+K+RLPSG+KKT+SS  R ++GI+AGGGRTDKPMLKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A AG+KVGL+AARRTGRLRGI+   E
Sbjct:    1 MGKVIRTCRKGVGGIFKSHTKLNKNPVKLRKLDYAEKHGYIKGVVKEIVHESGRGAPIARVQFKNAYRFKRDTESFVAVEGIYSGQFIFAGKKAALVIGNVLPLSQIPEGTVVSNVEARPGDRGSFARTSGGYAVIVAQDEDRGTTKIRLPSGAKKTVSSSSRGVIGIIAGGGRTDKPMLKAGRAYHKYRVKRNEWPKVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDAPAGKKVGLVAARRTGRLRGIKKNAE 254
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BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: A0A418F530_9STRA (Ribosomal_L2_C domain-containing protein n=14 Tax=Saprolegniaceae TaxID=4764 RepID=A0A418F530_9STRA)

HSP 1 Score: 395 bits (1016), Expect = 8.120e-133
Identity = 182/255 (71.37%), Postives = 222/255 (87.06%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR-TEKE 762
            MG+VIRGQRKG GGIF SH + RKG    R  DY ER GYIKGV+K++IH+PGRGAPLA+V F++PYK++ ++EL++A EGMY+G FIY GKKA++ VGNI+P+  +PEGT+  ++EA++GD+G FARCSGDYAV+++HDE+KG +K+RLPSGSKKTI S CRAMVG+VAGGGRTDKP+LKAGRAYHK+RVKRNEWPHVRGVAMNPVEHP GGGNHQHIGHPST  R   AG+KVGLIAARRTGRLRGI+ T+K+
Sbjct:    1 MGRVIRGQRKGAGGIFKSHVKTRKGKAAFRTNDYVEREGYIKGVIKEIIHDPGRGAPLARVSFRDPYKYRINHELLIAAEGMYTGMFIYAGKKATMAVGNILPLSQLPEGTIVCNVEARIGDKGKFARCSGDYAVIVTHDEDKGKTKIRLPSGSKKTIPSACRAMVGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPHVRGVAMNPVEHPHGGGNHQHIGHPSTVKRDPPAGKKVGLIAARRTGRLRGIKKTDKD 255
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BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: K3X5U7_GLOUD (Ribosomal_L2_C domain-containing protein n=5 Tax=Eukaryota TaxID=2759 RepID=K3X5U7_GLOUD)

HSP 1 Score: 394 bits (1012), Expect = 3.270e-132
Identity = 181/250 (72.40%), Postives = 221/250 (88.40%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MG+VIRGQRKG GGIF SHT  R+G    R LDY ERHGYIKGVVK++IH+ GRGAPLA+V +++PY++K ++EL++A EGMY+GQFIY G KA++TVGNI+P+ ++PEGT+  ++EA+VGDRG+FAR SGDYAV+++HDE+KG +KLRLPSGSKKT+ S CRAM+G+VAGGGRTDKP+LKAGRAYHK+RVKRNEWP VRGVAMNPVEHP GGGNHQHIGHPST  R A +G+KVGLIAARRTGRLRGI+
Sbjct:    1 MGRVIRGQRKGAGGIFKSHTAKRQGAAAFRSLDYVERHGYIKGVVKEIIHDSGRGAPLARVTYRDPYRYKLNHELLIAAEGMYTGQFIYSGAKAAMTVGNILPLSALPEGTIVCNVEARVGDRGSFARASGDYAVIVTHDEDKGRTKLRLPSGSKKTVPSACRAMIGVVAGGGRTDKPILKAGRAYHKYRVKRNEWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDAPSGKKVGLIAARRTGRLRGIK 250
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Match: A0A7S1U069_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U069_9STRA)

HSP 1 Score: 394 bits (1011), Expect = 4.970e-132
Identity = 181/250 (72.40%), Postives = 217/250 (86.80%), Query Frame = 1 
Query:    1 MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIHEPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGNIMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRLPSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVRGVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR 750
            MGKV++  RKGKG +F SHTRLRKG V++R LD+ ER GYIKG+VKD+IHEPGRGAPLAKVQF N Y++K+DN L+VA EGMY+GQFI+CGKKA L VGNI+P+  +PEGTV  ++E   GDRG   + SG Y V+I+ DE+KGT+++RLPSG+KKT+S+ CRAMVGIVAGGGRTDKP+LKAGRAYHK+RVKRNEWP +RGVA NPVEHPFGGGNHQHIGHPST NR+ SAG+KVGLIAARRTGRLRG++
Sbjct:    1 MGKVVQACRKGKGSVFKSHTRLRKGKVQMRALDFGERTGYIKGIVKDIIHEPGRGAPLAKVQFNNAYEYKKDNTLLVAAEGMYTGQFIFCGKKAQLAVGNILPLGQLPEGTVVCNVETYAGDRGNLIKTSGGYGVVITQDEDKGTTRIRLPSGAKKTLSNKCRAMVGIVAGGGRTDKPLLKAGRAYHKYRVKRNEWPKIRGVAKNPVEHPFGGGNHQHIGHPSTTNRMCSAGKKVGLIAARRTGRLRGVK 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1986.6445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8U3_ECTSI2.740e-180100.00Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A7S2V227_9STRA5.990e-15184.40Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A835ZD66_9STRA8.500e-15181.50Translation protein SH3-like domain-containing pro... [more]
F0YEL9_AURAN9.270e-14077.20Ribosomal_L2_C domain-containing protein n=1 Tax=A... [more]
A0A7R9UAP5_9STRA5.490e-13974.80Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WUG0_9STRA5.660e-13574.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CPH3_NANGC2.960e-13372.83Large subunit ribosomal protein L8e n=1 Tax=Nannoc... [more]
A0A418F530_9STRA8.120e-13371.37Ribosomal_L2_C domain-containing protein n=14 Tax=... [more]
K3X5U7_GLOUD3.270e-13272.40Ribosomal_L2_C domain-containing protein n=5 Tax=E... [more]
A0A7S1U069_9STRA4.970e-13272.40Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1986contigEcto-sp13_S_contig1986:3084..6510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score517.3
Seed ortholog evalue4e-144
Seed eggNOG ortholog2880.D7G8U3
Preferred nameRPL8
Model size1652
KEGG koko:K02938,ko:K09228
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904,GO:1990932
Exons3
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0090@1,KOG2309@2759
Ec32 ortholog descriptionRibosomal protein L2, C-terminal
Ec32 orthologEc-15_004240.1
Cds size765
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463001.6216323-CDS-Ecto-sp13_S_contig1986:3083..33631681463001.6216323-CDS-Ecto-sp13_S_contig1986:3083..3363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1986 3084..3363 +
1681463001.6363826-CDS-Ecto-sp13_S_contig1986:4097..43801681463001.6363826-CDS-Ecto-sp13_S_contig1986:4097..4380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1986 4098..4380 +
1681463001.6464446-CDS-Ecto-sp13_S_contig1986:5421..56231681463001.6464446-CDS-Ecto-sp13_S_contig1986:5421..5623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1986 5422..5623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463001.664695-UTR-Ecto-sp13_S_contig1986:5623..65101681463001.664695-UTR-Ecto-sp13_S_contig1986:5623..6510Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1986 5624..6510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1986.6445.1prot_Ecto-sp13_S_contig1986.6445.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1986 3084..5623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1986.6445.1

>prot_Ecto-sp13_S_contig1986.6445.1 ID=prot_Ecto-sp13_S_contig1986.6445.1|Name=mRNA_Ecto-sp13_S_contig1986.6445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MGKVIRGQRKGKGGIFTSHTRLRKGPVKLRKLDYAERHGYIKGVVKDLIH
EPGRGAPLAKVQFQNPYKFKRDNELIVAVEGMYSGQFIYCGKKASLTVGN
IMPVRSMPEGTVCSSIEAKVGDRGTFARCSGDYAVLISHDEEKGTSKLRL
PSGSKKTISSDCRAMVGIVAGGGRTDKPMLKAGRAYHKFRVKRNEWPHVR
GVAMNPVEHPFGGGNHQHIGHPSTANRLASAGQKVGLIAARRTGRLRGIR
TEKE*
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mRNA from alignment at Ecto-sp13_S_contig1986:3084..6510+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1986.6445.1 ID=mRNA_Ecto-sp13_S_contig1986.6445.1|Name=mRNA_Ecto-sp13_S_contig1986.6445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3427bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1986:3084..6510+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAAGGTTATCCGTGGGCAGAGGAAGGGTAAGGGAGGTATCTTCAC
CTCCCACACGCGCCTCCGCAAGGGGCCCGTGAAGCTCCGCAAGCTCGACT
ACGCAGAACGCCACGGCTACATCAAAGGCGTCGTCAAGGACCTCATCCAC
GAGCCCGGAAGGGGCGCGCCGCTGGCCAAGGTCCAGTTCCAAAACCCCTA
CAAGTTCAAGAGGGACAACGAGCTCATCGTAGCTGTGGAGGGCATGTACT
CCGGGCAGTTCATCTACTGCGGGAAGAAGGGTACGCGGAAGTTCTCACCC
ACACACAACGCTCGCCTTGGAAATTTTGTGTGGGCACGAGAGAACGGGTT
TGATGGGTGGCTCCAGATAACAGCCGCGGCAGCAGCATCACCTATACGAC
GCAAGCGCTTTGATGGGTGGCTCCCGACGACAGCCGGTTCGCCAGGGGTT
GTGCTTTGTGTTTGGGAAACGCAGCCCCCCCTTCGCACGGCGGCAAAGCG
GCGGTCCTCCTCTGATTACCTCTTCGTTCACCCCCCAGCTCGCCTCCTCT
GTGCTTCCTCTCTATTTTCGAGACATTTTGTCTCTCTATTTTCGAGACAC
TTTGTTTCGAAGGAGAGAGGTGCACAGGGCCAGAGCAAAGCAAGGGGTGT
GTCGTGAGAGTGTCGTCGGTTGGACTGCATGCACCTTGATGGATGGCGTC
CGAAAACAGCCACGGCAGCGTTCTGCTTGCTTTTTTTTGCATAGCTCTTA
TAGAGAAAGTAGAGAGCACGTAAGCAAGTCAGTAAATGCTTACACATGAT
CTGAAAAAGATCTGCGCGGTTATGTGTAGATTTGTCATGTGTAACTGGGT
AGTGGTCCAGTTGTGTGGCAACATGTCCCGATTTTAGTTAGCGGTAGGCA
TTGTGCCGCGGGGACACAACTCTTAATGCGTGTTGATAACTGTGCACCGC
CGCCCCCCTCATACCCAATCCCGTGCTTCATTCTTTTATTTGACCCGGAA
CAAAAACGGCACAGCCTCCCTCACCGTCGGCAACATCATGCCTGTGCGCT
CCATGCCCGAGGGTACCGTCTGCTCCTCCATCGAGGCCAAGGTCGGTGAC
CGCGGCACCTTCGCCCGCTGCTCCGGCGACTACGCCGTCCTCATCTCGCA
CGACGAGGAGAAGGGCACCTCCAAGCTCCGCCTGCCCTCGGGCTCCAAGA
AGACGATCAGCTCGGACTGCCGCGCCATGGTCGGCATCGTCGCTGGCGGC
GGGAGGACCGACAAGCCCATGCTCAAGGCCGGGCGCGCTTACCACAAGTG
AGTCTTGTTCTTTCTTTTCTCTCACGAAAACCAACACGACGTAATTGCTT
CGACCTACGTTTCTCGAACGGGTATGCAGTTGTTGTCTTTCTGTGCCTAC
ATGTAAGCATATATTTTCTAGAAACCACAAGTTTTTTGTCTTTTTTTTCA
CGTTGCCCCATTTTTTTTCTTCCAAGTCAAAAGAACGTCTACTCTTGTTG
TGTCCGTTGTGGCCCGCTTGGGTCACACAAGTGGCTGTTGCGGAAAGAGT
TCGGGGGGTGGCGTATGTGCTTCAAGTTTTTCTTGTCGCGCAACGCTGCT
GGTAGTGTCATACGTCTCGGTGTTCTTGTTTTTGCTTGAGGTTTCTTGTA
CGGTGTGTTGCGTTTGGAGTACAGACCGGTTTGGTTCGGTCGTTTCGCAC
ACGGCGGTAGCCAGTCGCCCTCGCGGATTCTCGATTCAAGTTCGTTTTTT
GTGCAACTACAGGGAAAGAGTTATGATGCCTTGCGTCATTCTCGCCCCCC
CTGCCACATATCAGTTGCAGTTGGTGCCTTTCCAACTACTCTCGGCGCAG
TTGTTTGTCGCTCCAAAGGGTCCCGGCCATTATTAAGTAGACGCCGCTCT
GCCGCTCGATAAACGCGCCGAATACCCGACACCTGTTGTTTGTAGCTGCG
CGTATCTCAGGTGTAGAGGCACGTCAGAGAAGTTTTAACAATTTTCCGGG
AAAACGTGCAGATGGGAGTAAATTTTCGACGATTACATCATGATTCTTCA
CACGGTGTGACACCACTAATGTACATCCGGCGGTGGTGAAATCTTGTTCA
TATCAGCATTAACCCCGATGTGCATCTGGAGACTTGAATAGCCAAAGTTT
TCGTTTGCGTTCCGAGGCTTTCGAGCTTCAGCCTGAACGCGTTGTAGGAC
TTGAGTTCTTACATGAGGCCCCACCCTCCCTCCCAAATTCATCTCTGCAT
GTACAAGTACGCCGCCTTTTTCTAGCACCTCTCGATATCCTTACGATGGC
TCTCCTGCTTCTATTTCCTCTGCCCACTTTTTTTCCAGGTTCCGCGTCAA
GCGCAACGAGTGGCCCCACGTGCGTGGTGTGGCGATGAACCCCGTGGAGC
ACCCCTTCGGTGGTGGTAACCACCAGCACATCGGGCACCCCTCGACGGCC
AACCGCCTAGCCTCGGCCGGTCAGAAGGTCGGTCTCATCGCCGCCCGCCG
CACCGGCCGCCTGAGGGGCATCCGCACGGAGAAGGAATAAGCGCCGTTTC
CTGACTTGATGTGACGGGAGACCGGTCCTGTTCTTGAACTTTGAGCGCGC
TCCGAAGAAAGGAGGACGTTTCCAGCTGAAATTTCGCACGGCGTTTTTTG
TGCTTTTTTGAATTCCTGATTTCACGTACCCCCGCCCCTCCCCCCCCGAG
TGGTTTCCTCTCGGTTGCGGTAGGAGGATCGACTTCAGTCGTTGGTAGCC
GATTGACCCCTGGATAGCAGAGGGTGTCGTTGTGACTGCTGCTCTTTGCG
AGTTTCGTGTGGGTCCCATTGTGGCGCATACGAAAATGGCGGAAGCACGG
TAGACGGTTACTTTCGTAGGAGTTGTAGGGGAATTTCAGTGTTTTCAGAG
ACGTTTCGTGTTATTTTTCAGTTGGTGGCGGTCTTTGTCTCGAGCTTGTC
TTGTTCCTTTCGTGGGATCACTTCTTTCGCTAGCCACGGGAGAAGGTACG
CTCTGTTCGCAATCTGTCGAAGCACGACACAATTTTTTTTTGAACACGTC
GATGAGAAACGATTCGCCTCGCGCGTCTGATGATCCACGTCCTCGCACCA
CAAGATCGTCGTGGCTGGGTCATGTCGACCGGTGTGTGGCGGAAGCGTGG
AAGGACGTAAAAGAATACTCTCATCAACGTTCGCAGTGATTAGTGATTCC
TTCTTCCCTGCTTGGGTCATTCCAACACCCAGAGCCGCTTTCTTGTCGAG
GCAACACTGGGAAGGTTTATACCCCATTTCCACTATTTTCTGTGGATGCC
CGGTAGTATTCTCTTTTTGCCTCTCTCTCGGGCTGTGCATTCATCGACAT
CAGTGTTCACCGACTCGTTCAATGCTGGAACTGATTGTCTCCCCGATGCA
CCCACGGGCGAGAAAATAGGTCGCCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1986:3084..6510+

>mRNA_Ecto-sp13_S_contig1986.6445.1 ID=mRNA_Ecto-sp13_S_contig1986.6445.1|Name=mRNA_Ecto-sp13_S_contig1986.6445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1986:3084..6510+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAAGGTTATCCGTGGGCAGAGGAAGGGTAAGGGAGGTATCTTCAC
CTCCCACACGCGCCTCCGCAAGGGGCCCGTGAAGCTCCGCAAGCTCGACT
ACGCAGAACGCCACGGCTACATCAAAGGCGTCGTCAAGGACCTCATCCAC
GAGCCCGGAAGGGGCGCGCCGCTGGCCAAGGTCCAGTTCCAAAACCCCTA
CAAGTTCAAGAGGGACAACGAGCTCATCGTAGCTGTGGAGGGCATGTACT
CCGGGCAGTTCATCTACTGCGGGAAGAAGGCCTCCCTCACCGTCGGCAAC
ATCATGCCTGTGCGCTCCATGCCCGAGGGTACCGTCTGCTCCTCCATCGA
GGCCAAGGTCGGTGACCGCGGCACCTTCGCCCGCTGCTCCGGCGACTACG
CCGTCCTCATCTCGCACGACGAGGAGAAGGGCACCTCCAAGCTCCGCCTG
CCCTCGGGCTCCAAGAAGACGATCAGCTCGGACTGCCGCGCCATGGTCGG
CATCGTCGCTGGCGGCGGGAGGACCGACAAGCCCATGCTCAAGGCCGGGC
GCGCTTACCACAAGTTCCGCGTCAAGCGCAACGAGTGGCCCCACGTGCGT
GGTGTGGCGATGAACCCCGTGGAGCACCCCTTCGGTGGTGGTAACCACCA
GCACATCGGGCACCCCTCGACGGCCAACCGCCTAGCCTCGGCCGGTCAGA
AGGTCGGTCTCATCGCCGCCCGCCGCACCGGCCGCCTGAGGGGCATCCGC
ACGGAGAAGGAATAA
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