mRNA_Ecto-sp13_S_contig19847.6437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19847.6437.1
Unique NamemRNA_Ecto-sp13_S_contig19847.6437.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19847.6437.1 vs. uniprot
Match: D8LJB5_ECTSI (MORN domain repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB5_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 2.710e-102
Identity = 164/167 (98.20%), Postives = 164/167 (98.20%), Query Frame = 1 
Query:  103 RRSGPGTLFRGNVKRVYDPRSGKKAIKSNRIYEGNWRASELRTGSMVTMTKAGVTHCAGPNKGVWYNRAVDRIKRRETQTHRKTVESLDFYGRYQTLLRTEVQKKKSRLYSNQVKQANQDLINDHVKKITAEELREAFGARAINLEQIMRVTGKQLEAEPGSGAIAK 603
            RRSGPGTLFRGNVKRVYDPRSGKKAIKSNRIYEGNWRASELRTGSMVTMTKAGVTHCAGPNKGVWYNRAVDRIKRRETQTHRKTVESLDFYGRYQTLLRTEVQKKKSRLYS QVKQANQDLINDHVKKITAEELRE F ARAINLEQIMRVTGKQLEAEPGSGAIAK
Sbjct:  591 RRSGPGTLFRGNVKRVYDPRSGKKAIKSNRIYEGNWRASELRTGSMVTMTKAGVTHCAGPNKGVWYNRAVDRIKRRETQTHRKTVESLDFYGRYQTLLRTEVQKKKSRLYSKQVKQANQDLINDHVKKITAEELREVFVARAINLEQIMRVTGKQLEAEPGSGAIAK 757
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19847.6437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJB5_ECTSI2.710e-10298.20MORN domain repeat containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19847contigEcto-sp13_S_contig19847:3..2568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score325.1
Seed ortholog evalue2.3e-86
Seed eggNOG ortholog2880.D8LJB5
Model size603
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Cds size603
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.96833-CDS-Ecto-sp13_S_contig19847:2..1461681463000.96833-CDS-Ecto-sp13_S_contig19847:2..146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19847 3..146 -
1681463000.981405-CDS-Ecto-sp13_S_contig19847:728..8481681463000.981405-CDS-Ecto-sp13_S_contig19847:728..848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19847 729..848 -
1681463000.9917445-CDS-Ecto-sp13_S_contig19847:1365..14641681463000.9917445-CDS-Ecto-sp13_S_contig19847:1365..1464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19847 1366..1464 -
1681463001.0028598-CDS-Ecto-sp13_S_contig19847:1749..19211681463001.0028598-CDS-Ecto-sp13_S_contig19847:1749..1921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19847 1750..1921 -
1681463001.0129538-CDS-Ecto-sp13_S_contig19847:2500..25681681463001.0129538-CDS-Ecto-sp13_S_contig19847:2500..2568Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19847 2501..2568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19847.6437.1prot_Ecto-sp13_S_contig19847.6437.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19847 3..2568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19847.6437.1

>prot_Ecto-sp13_S_contig19847.6437.1 ID=prot_Ecto-sp13_S_contig19847.6437.1|Name=mRNA_Ecto-sp13_S_contig19847.6437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
MGEYEGDWVNGEFQGKGRISFRGGNTYEGFFLDNRRSGPGTLFRGNVKRV
YDPRSGKKAIKSNRIYEGNWRASELRTGSMVTMTKAGVTHCAGPNKGVWY
NRAVDRIKRRETQTHRKTVESLDFYGRYQTLLRTEVQKKKSRLYSNQVKQ
ANQDLINDHVKKITAEELREAFGARAINLEQIMRVTGKQLEAEPGSGAIA
K
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mRNA from alignment at Ecto-sp13_S_contig19847:3..2568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19847.6437.1 ID=mRNA_Ecto-sp13_S_contig19847.6437.1|Name=mRNA_Ecto-sp13_S_contig19847.6437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2566bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19847:3..2568- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGAGTACGAGGGAGACTGGGTCAACGGGGAGTTCCAAGGGAAGGG
AAGGATATCTTTCAGAGGGTGAGGTTCTTCGTTGTGTTTCACTACGGATT
CTTGGATTCTACACAAGGTTCAACGCGCTGTTGTGGAAGGTGTTTGTGGG
GAAAGGGAAGGGATGTTGTCCCGTTGGGTATCAACGGGTAGAATACCATT
GAAAATGGCTGAGGACGATTGCAGGGATCTGGGCTTGAAGGGGTACATTC
ACTTTCTGGCAGCGAAGTGAAACTCCCTCCGCACCTCAATCACTACACCC
TAGTTTTTCTCCTACCCTCTCGAAAAGTCAACCACCCTCTCGGCGATTTG
AAGTCCCGGAACACCTGGAGAAACCTGGCGTTTCGCCACACGTGTTCCGC
TCAACAATCAGAGCTGCAGAGATACACCCAGAGGCTTTTATCCCTTTCTT
GGGATGAAAGACGCTCCAGTCATACTTTGACTCCACCTGAAACAAAAAAA
GTCAGTCACAGAACAAAATCTTCGCAACATCGAACTTACACCAGCTGCCC
ACCCGCTCGTGCTTTCTGTTGCCGCCAAGCGCGTCTAGGCGAACTCGTTC
ATGTTAATGGTTCTGTATACCTGATGGCAATCCACACCCCGCCACAGGGG
AAACACGTACGAAGGCTTTTTCTTGGACAACAGACGGTCCGGCCCGGGCA
CGCTGTTCCGGGGCAACGTAAAGCGGGTCTACGATCCGAGGTCGGGCAAG
AAGGCCATCAAGAGCAACCGGATCTACGAGGGCAACTGGCGGGCCAGCGA
GCTCCGAACTGGGAGCATGGTACGTGGACCGCGAGTGCAAGCATCGAGTA
CCGGAGCCGAAAGAACAACCCGGTGATACTCTCTCGCCTCCACCTGAATC
GCCTCGAATTGATTCAGGCGTTGCTCAATGTCGGAGGTGACACGAAATCA
ATGCGGGAGCGTCCCGTCCTTGATCACCAGGTGGAGGGTATCTTCAAATG
GCTTGAAGAACGCAAGAACACAGCACCCCTTCCGAACGACACACACCTAG
TTTAGAACCAGTCATCCATTCACGACGCTGTGCTGTCTTGTGCACAACGG
GAAGGTGACCATGACGAAGGCCGGGGTGACACACTGCGCAGGGCCCAACA
AAGGCGTCTGGTACAACAGGGCCGTGGATCGCATCAAACGCAGAGAGACA
CAGGTGGGTGCCGAGCTCGTCCCCTCCTGTGAAGGGCGTGGACGTTTTGT
CTCGTGGTTTGGTCCTTGGACAAAAGCTCGTCTTCGGCTGCAAGGACTGG
AAAAAGATTGGCGGGGGTTGGCGCGGCAGCGGTTGTTCTTATCTTCTGGC
ATGACAGCGCGCGCGGGAAAATAAACGAGGAGGACGTACGTGAGCCTCAG
ACCTGCGCCGGTAGCTGTCCATATCACAGACGACAAAAGGCAACACGAAG
CGTCTTGATGCAAGTTCCCGCAAACAAACGGAGAGATGCCGATGTCCCAC
CATAAACCGATGTAACGGCCTCGTCAGGAAGAGGCGTACCGGGAGGCCGT
CGATCAAAAGGAGATGAAACTATGAAACGCCGCTGGCACTCCTTTTACCG
GGAAGCTACACGGTTTTACCGTCAAATGCGTTTGCCTGTTCCTCCTCGGC
TGTTGTTTTGGACCGAAAGTCCTTCGGTTCCTGAAATATCCAAGCATCAA
TGTACTTGCCCCTCCGATAGACGCACCGCAAAACGGTGGAATCGCTCGAC
TTCTACGGACGGTACCAGACCTTGCTGCGGACAGAGGTGCAGAAGAAAAA
GTCCCGTCTATACTCCAACCAGGTCAAGCAAGCAAATCAGGTGTGGTCCC
CGGTTGACACTCGCATGAGGCCTCCGGATAACATGTGATGCGTTCTTCTT
GTGTGGATGTCGATGGCTTCTACTCCTCCCGGAGAAGAACTAGGCACGAA
GGCACTGATATTTTCATCTCTGACATGTTGGTGTACCCCCCCTCCTCAAT
CTTTGTCTTCTTGCACACGCTGTTCAACAATCCAACGCCATCACGCCGAG
ATCGAGCGGCAGTCTCACACTGTCTTGGCTTTTATCCCTCTCGTTCCACT
CACCGTTCACTCACCAAATGCAACACATCGAATTCGACTGTCACTTTCCA
GTTGGTGCAGCGCATCGAGTCTGTACTCGGCGAAACACGTCCACTTATTT
TTGGCTTTAAGCCTGAAATGTTGCGGGCCTGTAGTGCGAAGACTACAGCT
TCAAACACATACTGTTAAGCGGCTCCCCGCACCTGCGAGATATGTAGATG
ACTCCCGCCCCCCCCTACCTTTTCAGAAGGCCTAACCACCGCTCGCTAAC
CATTTCTTGTTCTATGTTCTGCTTTTGCATGCACGTGTGCCAATGGCATT
GCTACCTCCTCCATTACACCAGGACCTGATCAACGACCACGTGAAGAAGA
TCACCGCTGAGGAACTAAGAGAAGCATTCGGGGCGAGGGCGATCAACCTA
GAACAGATCATGCGGGTCACCGGCAAGCAGCTGGAGGCCGAACCCGGATC
GGGCGCCATCGCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19847:3..2568-

>mRNA_Ecto-sp13_S_contig19847.6437.1 ID=mRNA_Ecto-sp13_S_contig19847.6437.1|Name=mRNA_Ecto-sp13_S_contig19847.6437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19847:3..2568- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGAGTACGAGGGAGACTGGGTCAACGGGGAGTTCCAAGGGAAGGG
AAGGATATCTTTCAGAGGGGGAAACACGTACGAAGGCTTTTTCTTGGACA
ACAGACGGTCCGGCCCGGGCACGCTGTTCCGGGGCAACGTAAAGCGGGTC
TACGATCCGAGGTCGGGCAAGAAGGCCATCAAGAGCAACCGGATCTACGA
GGGCAACTGGCGGGCCAGCGAGCTCCGAACTGGGAGCATGGTGACCATGA
CGAAGGCCGGGGTGACACACTGCGCAGGGCCCAACAAAGGCGTCTGGTAC
AACAGGGCCGTGGATCGCATCAAACGCAGAGAGACACAGACGCACCGCAA
AACGGTGGAATCGCTCGACTTCTACGGACGGTACCAGACCTTGCTGCGGA
CAGAGGTGCAGAAGAAAAAGTCCCGTCTATACTCCAACCAGGTCAAGCAA
GCAAATCAGGACCTGATCAACGACCACGTGAAGAAGATCACCGCTGAGGA
ACTAAGAGAAGCATTCGGGGCGAGGGCGATCAACCTAGAACAGATCATGC
GGGTCACCGGCAAGCAGCTGGAGGCCGAACCCGGATCGGGCGCCATCGCC
AAG
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