mRNA_Ecto-sp13_S_contig1984.6433.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1984.6433.1
Unique NamemRNA_Ecto-sp13_S_contig1984.6433.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1984.6433.1 vs. uniprot
Match: A0A6H5KD03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE)

HSP 1 Score: 1151 bits (2977), Expect = 0.000e+0
Identity = 619/655 (94.50%), Postives = 624/655 (95.27%), Query Frame = 1
Query:  112 MPPVPVLSRNLPPHSPQSLSRKSSWKHSLRGVGTRSRTGSDAGDDAESTAAGSVKMGKLGGLGGGVSGGEKDNSQGYAISSYELVNKPRAYWTVAAEVVAKGATMPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILRSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGIAPRQILDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPNLADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAXXXAANDGSTAASRPGSPTELPPAAPADLGNKKXXXXXXXXXXXXXXXXXXPAGMGASEAHCNWALAHAACRVCRVVGRTFQVAISYQTMQNQNRVGVDGGSGGSSTVLASPAATSSVGGERRGSGTSGPRPPSVNARHGFSEGLLALGGDGSQPVTPEVGTGSAFNLLGLPPSPAPRSAITRAPSAWGPTAG 2076
            MPPVPVL R +PPHSPQSLSRKSSWKHSLRGVGTRSRTGSDAGDDAESTAAGSVKMGKL         GEKDNSQGYAISSYELVN+PRAYWTVAAEVVAKGATMPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVIL SAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGI  RQILDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPNLADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAA   AA+DGSTAASRPGSPTELPPAAPADL NKK   XXXXXXXXXX     PAG+GASEA+CNWALAHAACRVCRVVGRTFQVAISYQTMQNQNR GVDG SGGSSTVLASPAATSSVGGERRGSGTSGPRPPSVNARHGFSEGLLA G DGSQPVTPEVGTGSAFNLLGLPPSPAPRS ITRAPSAWGPTAG
Sbjct:    1 MPPVPVLPRKMPPHSPQSLSRKSSWKHSLRGVGTRSRTGSDAGDDAESTAAGSVKMGKLXXXXXXXXXGEKDNSQGYAISSYELVNRPRAYWTVAAEVVAKGATMPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILGSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGITQRQILDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPNLADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAATAAHDGSTAASRPGSPTELPPAAPADLSNKKKKLXXXXXXXXXXAGNG-PAGVGASEAYCNWALAHAACRVCRVVGRTFQVAISYQTMQNQNRAGVDGSSGGSSTVLASPAATSSVGGERRGSGTSGPRPPSVNARHGFSEGLLASGRDGSQPVTPEVGTGSAFNLLGLPPSPAPRSGITRAPSAWGPTAG 654          
BLAST of mRNA_Ecto-sp13_S_contig1984.6433.1 vs. uniprot
Match: D7FJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI)

HSP 1 Score: 795 bits (2054), Expect = 3.460e-276
Identity = 429/444 (96.62%), Postives = 436/444 (98.20%), Query Frame = 1
Query:  424 MPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILRSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGIAPRQILDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPNLADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAXXXAANDGSTAASRPGSPTELPPAAPADLGNKKXXXXXXXXXXXXXXXXXX-PAGMGASEAHCNWALAHAACRVCRVVGRTFQVAI 1752
            MPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILRSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGI+PRQI+DAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLA++GGEPNLADSLACVYYLRAIKALAFA ALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAA   AA+DGSTAASRPGSPTELPPAAPADLG+KKXXXXXXXXXXXXXXX    PAG+GASEAHCNWALAHAACRVCRVVGRTFQVAI
Sbjct:    1 MPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILRSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGISPRQIIDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLASAGGEPNLADSLACVYYLRAIKALAFAGALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAATAAHDGSTAASRPGSPTELPPAAPADLGHKKXXXXXXXXXXXXXXXAGNGPAGVGASEAHCNWALAHAACRVCRVVGRTFQVAI 444          
BLAST of mRNA_Ecto-sp13_S_contig1984.6433.1 vs. uniprot
Match: A0A835Z8W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.790e-29
Identity = 101/287 (35.19%), Postives = 126/287 (43.90%), Query Frame = 1
Query:  892 GRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMK---------------------------------------------------------SPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPNLADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEA------------------------------------MQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEA 1473
            GR   + +   +E L +S  + SA+RR  AL R  S+LP VL  C S N + ARHAFA+L + A                                                            P  V++ +    +L PTTV    A  G      +PNL D LACVYYLR +K L FA  L+   RLD YRT+ +SVSD RHRVALEA                                    MQCL+DH RAW LLV+AQRESRDAD+FRRVVD ++ C+  A
Sbjct:  388 GRKAHRGEAEVKEHLLLSRVVLSAVRRSAALRRRASLLPRVLEACRSPNAVTARHAFAVLLEQAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSMVLAEXXXXXXXXXXXXXXXAMDPKAVAEGVYP--LLQPTTV----AAAGALEIHNQPNLEDPLACVYYLRVLKTLVFAPELEAQSRLDFYRTIANSVSDTRHRVALEASDVFNLNFNPVPHTVAGATAVGSLTAQSWNYRGTAAMQCLMDHERAWTLLVDAQRESRDADLFRRVVDALRRCLAAA 668          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1984.6433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KD03_9PHAE0.000e+094.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJG9_ECTSI3.460e-27696.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8W3_9STRA2.790e-2935.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1984contigEcto-sp13_S_contig1984:88..6087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2087
Hectar predicted targeting categorysignal peptide
Exons9
Cds size2085
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1984.6433.1prot_Ecto-sp13_S_contig1984.6433.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1984 88..6087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463000.6804566-CDS-Ecto-sp13_S_contig1984:87..4181681463000.6804566-CDS-Ecto-sp13_S_contig1984:87..418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 88..418 -
1681463000.6910448-CDS-Ecto-sp13_S_contig1984:707..10851681463000.6910448-CDS-Ecto-sp13_S_contig1984:707..1085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 708..1085 -
1681463000.702718-CDS-Ecto-sp13_S_contig1984:1353..16191681463000.702718-CDS-Ecto-sp13_S_contig1984:1353..1619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 1354..1619 -
1681463000.7142997-CDS-Ecto-sp13_S_contig1984:1929..21301681463000.7142997-CDS-Ecto-sp13_S_contig1984:1929..2130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 1930..2130 -
1681463000.7219903-CDS-Ecto-sp13_S_contig1984:2664..28751681463000.7219903-CDS-Ecto-sp13_S_contig1984:2664..2875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 2665..2875 -
1681463000.729913-CDS-Ecto-sp13_S_contig1984:3146..33041681463000.729913-CDS-Ecto-sp13_S_contig1984:3146..3304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 3147..3304 -
1681463000.7374723-CDS-Ecto-sp13_S_contig1984:3656..37371681463000.7374723-CDS-Ecto-sp13_S_contig1984:3656..3737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 3657..3737 -
1681463000.7456732-CDS-Ecto-sp13_S_contig1984:4250..43561681463000.7456732-CDS-Ecto-sp13_S_contig1984:4250..4356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 4251..4356 -
1681463000.753807-CDS-Ecto-sp13_S_contig1984:5734..60871681463000.753807-CDS-Ecto-sp13_S_contig1984:5734..6087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1984 5735..6087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1984.6433.1

>prot_Ecto-sp13_S_contig1984.6433.1 ID=prot_Ecto-sp13_S_contig1984.6433.1|Name=mRNA_Ecto-sp13_S_contig1984.6433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=695bp
MEPPCTRRWCSPWCGCVLLVGCIGCARVPSTPPRLVTMPPVPVLSRNLPP
HSPQSLSRKSSWKHSLRGVGTRSRTGSDAGDDAESTAAGSVKMGKLGGLG
GGVSGGEKDNSQGYAISSYELVNKPRAYWTVAAEVVAKGATMPKKRLVPL
LRELCIRIGDYTVCDGAFFGALLVILRSAKEGDWDGKAVRLVHFFVRGMV
TVQGDTEGRVLGSHWEGRGIAPRQILDAIECFRQESEHRSSVRQIPAFHT
VATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRA
LRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAA
RHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPN
LADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEA
MQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAA
ATAANDGSTAASRPGSPTELPPAAPADLGNKKKKKMRKKDKGSGGGAGNG
PAGMGASEAHCNWALAHAACRVCRVVGRTFQVAISYQTMQNQNRVGVDGG
SGGSSTVLASPAATSSVGGERRGSGTSGPRPPSVNARHGFSEGLLALGGD
GSQPVTPEVGTGSAFNLLGLPPSPAPRSAITRAPSAWGPTAGGGG
back to top

mRNA from alignment at Ecto-sp13_S_contig1984:88..6087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1984.6433.1 ID=mRNA_Ecto-sp13_S_contig1984.6433.1|Name=mRNA_Ecto-sp13_S_contig1984.6433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6000bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1984:88..6087- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACCGCCGTGTACACGGCGTTGGTGTTCGCCGTGGTGTGGTTGTGT ACTCCTGGTGGGCTGCATTGGTTGTGCACGGGTTCCTTCGACGCCACCAC GCTTGGTCACGATGCCTCCCGTTCCCGTCCTATCTAGGAACTTGCCTCCG CACTCCCCTCAGTCGCTCTCCAGAAAATCCAGCTGGAAACATAGTCTTCG AGGCGTCGGTACGCGAAGCAGGACGGGCAGCGATGCCGGCGATGATGCTG AGAGCACCGCGGCAGGGTCGGTCAAGATGGGCAAGCTTGGAGGGTTGGGT GGTGGCGTCAGCGGCGGGGAGAAAGACAACAGTCAAGGCTACGCCATAAG CAGGTAAGAACAAACCTGGGGCCCCCCAACAACAGCAGTAACTGCAGGAC TCCTAATTCAGGCAGCTGTAGACGTCCAACAGCAGTAGGAGGAGCTCACT CCGTAGGAACCAACACCGGCAAGGGGTCATATCGTCGCCATCCGTTCTCG CACAACAACTGATGCATGTGTGTAGGTCGTGTTTATCGCCCGTGACGTAT GGTGGTTTGGTTTTTGAGGAGGGAGGTGCAGGTGGTGAGTTGGGCGGGTG CCAAGGACATTCCGCTCTCCTGGACCGCATCAGCACCTACATAGCAGTAT ACCTCTCTCTCGACTGCTGACTCTGTTCAAGTTAGCGACTTAGTGGCTGA AGCTCACACTGCCGCTCTGCCGGAAGGTAGCGCGCTGCAATGGCTGAGTC GCAGAGGAATGTGGCGTTCCTCGCTTAGCCGGAATAAACAACAGCAATTA AGGGCCCCCAGAACAGCAAGTTCCATGTTGACTAATTTTGAAAACATACA AAGGCAGCAGAAACTGTACAGACACACAAGACCAGTCGGAAGGAATCGCA AAAAACAGAAATCGTTGAATACCGCACAGGGCGACGGTAGAAGCTGCTCA GAACATACATTTCACGTGTCTACCTCCGCACGCCCCCTTTGAAATCAACA TACAAATTCGCCATATTCTTATTTCAAGTCAACAGAGCCAAAACGGCAGG CGTTCAAATGGTCCGTGTTGCCAGGAACCTGGTAATTAGTACTGTTGTCA GTAGAGGATACCATGAAGAGGCTTGTGCGTGCTGGCACGTTCAGGTTTGC TACTGGAGCTGAAATATCGAAGGTTGCAGCAACCTCTGAAAACAGTCCGA AATCTGCACCGGATCCAAGCGGCATCCAACATTTCAATTTGCAACATTTG TCACAGCCGTGATCACCGCCGCGGACCCCAATCTCCTGAACTGTGCGTTT ACAGCAGTAGCTCATGCCACGAGCTACTGCGGACAGCCCTCTGTTGAGGG GTTTACGGTTCGTAGCGGTGAGAACGGCTGTGTCAAATGTTGGATGCCGC TTGGTTCCGGCGCAGATTTCGGACTGTTTTCAGAGGTTGCTGCGACCTTC GATATTTCAGCTCCAGTGGCAAACCTGAACGTGCCAGCACGCACGACGCA TCTTCATGGTGTCCTCCACTGATACCAGTACTAATTACCAGGTTGCTCAT GCGGGAAGGTTATTATCTTCATTATGTTGGATTAAAGTATGAGGAAAGAG CCAGCGTCAAAACCCCTGTTCTGGGGGCCCTTAACTGTTCATGGTAACCG CCGCCTTTTTGATGCCACCGCGCCTCTGATCCCCCACCCCCCCTCTCCCG GCCTCCTTCCTGGCGTGTGAATTATTAACAGTTACGAGCTTGTGAACAAG CCGCGGGCTTATTGGACAGTTGCGGCAGAGGTTGTGGCGAAAGGGGCCAC CATGCCAAAAAAGCGGCTTGTTCCCTTGCTGCGAGAGGTGAGGAGGCAAC ACACACAGCTGAAGCCAGGCACAGATTCTCGACTAGATGTGAAAGGTTCG TAGACTTGCATGTGTTGATGGCATGTAGCCTCCTTACGCCCTGGAATCCG GCGTGTGATGGATGCGAACCTTGTCCTCGGATGCAGTCGATGGTTGTGTA CAGGTCGCACTCGATTCTGCAAGAAGCAGGTATATCCGACCGAAATGCCC ATGATATGGTGTAGACCTCATGCAGTCGATGGTTGTGCACAGGTCGCACT CGATTCTGCAAGAAGAAGGTATATCCGACCGAGATGCCCATGATGTGGTG TACCACTATTGGACGACCTCATATCGGCTCGTGGGACACCCGATGCCGGA ACAGCAAGCAATGAAATGGGACGATTCCGACCGACCCTTTCAAAGATACA TGCCTGCGCAAGCCGACAACATGCACAGCACTCTACCCACATGGACCGCG TCCCGCTGCTTGTCTCTCTATGTTTACCGCAACCTCCACATCCGCAAAAG CTATGCATTCGGATAGGAGACTACACGGTCTGCGACGGCGCGTTCTTCGG CGCTCTCCTGGTCATCCTGCGCTCGGCCAAGGTGCGTCATGCACCACACC ATTACCACCCCTGTCATTCCCGAAGAGTATGGTGATGCTGGTAGTGTCAC TGTCTGTGCCTATATGGTACCTTTTAAGGTTGCGGCGTCTCTTGCACTCT CTCCCTCCTTACACGCAACACGCCCGACGCATGAGTGGTTCGACACAAAT TACACATAGAAACGTTCTTCCTAGATTGATTGTGCCTCGGTTCCGGGTGT TTGCATAGGTCACCAGCTCGTTTATACCTCGATCGTCGGTTGATGTGTTT CCGACAGCATGGCGAGGCATGTTTCCCTCATCCCATACCGCCCCAACGTA AACCGGCGTTCGCAAACTCTCCCTTTGGCGTAGGAGGGGGACTGGGATGG CAAGGCGGTGCGCCTGGTGCACTTCTTCGTGCGAGGGATGGTGACTGTCC AGGGAGACACGGAGGGGCGGGTGTTGGGGTCGCACTGGGAGGGCCGCGGG ATAGCTCCACGGCAGATCCTAGACGCTATCGAGTGCTTCAGGTGAGAAGT TGTGAGGCGTCTTGGTGAACAAACACGACTACAACGGGCGTTGTTCGAAA CACTCTTTCTTCTATTGATATGCCGCTGTTGGGGAGATACCAACGTCATC CCATTCTAATAGCGTTGGAGATGCGCACGAAGTTTTCCACGAGTTAACGT TCCCGCTCCTATGCTGCCCACCGTCGCTTCCCGCTACCTTCTTCGGCATC TTTCCTTGGAACTACTGCGTGTCGCGCCGCGGCATGTGTTCACCATAACA CAACAATCGCAGACAAGAGTCCGAGCATCGTAGCTCAGTTCGACAAATCC CGGCTTTCCATACCGTGGCGACGCTCTGCCAGCTGGCTTCTGTGTCCGGG GTTGGCGGCCAACCGTCCCCTGTTGAGGTGCTCAGGGAAACGACCCTCAC CCCGCTGAGATCCTTGCAGGCCCAGGAGCGGCCGGAGAGAGGAGGCAAGA CCAAGGGGCGCGCTCTCCGGCAGGTAAAGTTCTCGCGTGGTGACGTGTTA CGCGTTGCGCATCGCATCACCTCGTGTATGTGGAACACTCGTGAGAACAC CCGCCTTATTGGTAAATGCTAGTTGCACGGATTTGTGCGCTCCTTGTGTG TGTGAAGAGTGTACGCTACCTTCTGATGATTTGTTCCAAAAGACAGAGTT TGTGCCATTGGGTACGTTTCGGTTGTCTACCGCCCCCCACCCACCCACCC CCGTGAATTTCTAGCTAAAAGAACGGGAAACACATTTCCATTGTCAACCA GCATACAGCAGTACAGGTCACCATTTAAAAACACAACGTGAATATATAAA ATATGCTTGAACGTGCAAGAACTAGTGAACTCACACTACCGTGTGAGGTA TCTGCGGATGAAACCAGAGGAGACGTGGCAACCTCCAGTGTCGCGAATAA TGGAGGTCCTTTACGCACGCAATATCATCTTCAACGTTGGGGAAACCTAT GTGCGCTCCTTGTACCACAATTGCCGCCCCATTTCCCCCCCGATGTATGT TCCACAGAGGCAAGAGGCGTTCGAGGAATCACTGCAAGTTTCGGCTGCCA TATTTTCAGCGATTCGCCGATGTCCGGCGCTGGCGCGCGACCAGAGCATC CTTCCCCCGGTGTTGCTAGGCTGCTGCAGCGAGAACCACCTCGCCGCCCG ACACGCCTTTGCGATCCTCGCGGACCTTGCCATGAAGTCGCCGGATGTGG TGTCTCAGGTGAGGGCGTAGGAAACATTTTGCGGGGCAGGTGGGCACCGG TCATCTTTGAAGAACAAAGAAAAGGAGCAACCGTGCGCTTAGTGCAACCA GCGGCCGCCGTTCTGTGAGAAGCGCGATTGGACGCGTTTTTCCTAGATGC CGCACAGCAACATGACAACTAGCTTCTCTACCTCTTACCGGCACCCCCCG TGCACGGCTCGCGCGAAAAATCCCTTAGCTATTGGTGACCATGCCTCTCT CTCACCCTCAACCGCTTTCTCCCATTTGTTTTGTGGGCGTCGTGCATGTT GGTTGGGGGTCCTCGCAGACGCTCCTAAGCAAGGCTATGCTCGTCCCGAC AACGGTGGGCATGCTTCAGGCCCCCGGCGGCCTCGCGGCCTCGGGGGGGG AGCCCAATCTGGCAGACTCCCTGGCGTGCGTGTACTACCTCCGGGCTATC AAAGCCCTGGCATTCGCGGAAGCCCTCGACGACACGATGAGGCTGGACAT GTACCGCACCATGGTTAGCTCGGTGTCGGACGCGCGGCATCGCGTGGCGT TGGAGGCGATGCAGTGCCTACTTGACCACCCGAGGTGTGGGTAGGGCCGG CAAGAGTTGGGTGCACTTTTCGTTTTGTTTTGTTTTGTTACTCACGAGCC AGGAGTGCGGGGTGTTCCTACGTCATAGGTTCGGCGTGTTGATGGACCGT ACTACTTCGCCTGCACTTGACCCGCGTGAAGTTCCTCGGGCTTGGCTTCT TCAGTCCATTGCAATCGACGCGTGCCTTCCAGAAAGTTGAAGTTTACCGC CCCCCTCTCGCATTCGCACGTTTGCTTTCCCGGCGAACGCGGAAAGTAAC AGGGCGTGGGAGCTGCTCGTGAACGCCCAGCGAGAGTCCCGAGATGCCGA CATCTTCCGCAGAGTAGTAGACCGCATCAAGGTGTGCGTGGAGGAGGCCA CTGCCCCCGCAACAGCCGCTGCGGCCGCCACTGCCGCAAACGATGGATCG ACCGCTGCTAGCCGGCCGGGATCCCCTACTGAGCTTCCCCCCGCGGCGCC CGCCGACCTTGGTAACAAGAAGAAGAAGAAGATGAGAAAAAAGGACAAGG GTAGTGGCGGCGGGGCTGGCAATGGACCGGCAGGGATGGGGGCAAGCGAG GCGCACTGCAACTGGGCGTTGGCCCACGCTGCTTGCCGGGTGTGTAGGGT GGTGGGCCGCACCTTCCAGGTGGCGATTAGGTGCGTGCTTGTATGCAGGC TGAGAGGTGATTGAGATTGTGCTGAGTTTTTTTTATCACGAGGCACACCT TGGGACGGGACGGGTCCGTCGATGTGCTAGAGAGTTATCATGCCTACAAT AGGCTCTGCTATGTCGCCGCTGCTTCGGCAGTCGTCCGTTCGAGGTTTTG GGTACAACTGCTCTTTTCTCGATTTTTACGCGCTGCCACGTAACCAAAGC CACCCCTCCGCCTCACAGCATACCCTCCGACACACACACATCCGCCCCGT GTAACCGCAACAACAACAGTTACCAGACGATGCAAAACCAAAATCGGGTC GGTGTCGACGGCGGCAGTGGCGGTAGCAGCACCGTCTTGGCAAGCCCGGC GGCGACATCAAGCGTCGGCGGAGAGCGTCGCGGCAGTGGGACCTCCGGCC CGCGTCCCCCGTCCGTCAACGCCCGCCACGGCTTCTCGGAAGGTCTGCTC GCGTTGGGGGGAGACGGCAGCCAACCGGTAACACCGGAAGTGGGGACGGG GTCGGCGTTCAATCTTCTTGGCCTGCCGCCGTCGCCGGCCCCGAGGTCGG CGATAACGAGAGCCCCCTCAGCTTGGGGCCCCACTGCGGGGGGGGGGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1984:88..6087-

>mRNA_Ecto-sp13_S_contig1984.6433.1 ID=mRNA_Ecto-sp13_S_contig1984.6433.1|Name=mRNA_Ecto-sp13_S_contig1984.6433.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1984:88..6087- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACCGCCGTGTACACGGCGTTGGTGTTCGCCGTGGTGTGGTTGTGT
ACTCCTGGTGGGCTGCATTGGTTGTGCACGGGTTCCTTCGACGCCACCAC
GCTTGGTCACGATGCCTCCCGTTCCCGTCCTATCTAGGAACTTGCCTCCG
CACTCCCCTCAGTCGCTCTCCAGAAAATCCAGCTGGAAACATAGTCTTCG
AGGCGTCGGTACGCGAAGCAGGACGGGCAGCGATGCCGGCGATGATGCTG
AGAGCACCGCGGCAGGGTCGGTCAAGATGGGCAAGCTTGGAGGGTTGGGT
GGTGGCGTCAGCGGCGGGGAGAAAGACAACAGTCAAGGCTACGCCATAAG
CAGTTACGAGCTTGTGAACAAGCCGCGGGCTTATTGGACAGTTGCGGCAG
AGGTTGTGGCGAAAGGGGCCACCATGCCAAAAAAGCGGCTTGTTCCCTTG
CTGCGAGAGCTATGCATTCGGATAGGAGACTACACGGTCTGCGACGGCGC
GTTCTTCGGCGCTCTCCTGGTCATCCTGCGCTCGGCCAAGGAGGGGGACT
GGGATGGCAAGGCGGTGCGCCTGGTGCACTTCTTCGTGCGAGGGATGGTG
ACTGTCCAGGGAGACACGGAGGGGCGGGTGTTGGGGTCGCACTGGGAGGG
CCGCGGGATAGCTCCACGGCAGATCCTAGACGCTATCGAGTGCTTCAGAC
AAGAGTCCGAGCATCGTAGCTCAGTTCGACAAATCCCGGCTTTCCATACC
GTGGCGACGCTCTGCCAGCTGGCTTCTGTGTCCGGGGTTGGCGGCCAACC
GTCCCCTGTTGAGGTGCTCAGGGAAACGACCCTCACCCCGCTGAGATCCT
TGCAGGCCCAGGAGCGGCCGGAGAGAGGAGGCAAGACCAAGGGGCGCGCT
CTCCGGCAGAGGCAAGAGGCGTTCGAGGAATCACTGCAAGTTTCGGCTGC
CATATTTTCAGCGATTCGCCGATGTCCGGCGCTGGCGCGCGACCAGAGCA
TCCTTCCCCCGGTGTTGCTAGGCTGCTGCAGCGAGAACCACCTCGCCGCC
CGACACGCCTTTGCGATCCTCGCGGACCTTGCCATGAAGTCGCCGGATGT
GGTGTCTCAGACGCTCCTAAGCAAGGCTATGCTCGTCCCGACAACGGTGG
GCATGCTTCAGGCCCCCGGCGGCCTCGCGGCCTCGGGGGGGGAGCCCAAT
CTGGCAGACTCCCTGGCGTGCGTGTACTACCTCCGGGCTATCAAAGCCCT
GGCATTCGCGGAAGCCCTCGACGACACGATGAGGCTGGACATGTACCGCA
CCATGGTTAGCTCGGTGTCGGACGCGCGGCATCGCGTGGCGTTGGAGGCG
ATGCAGTGCCTACTTGACCACCCGAGGGCGTGGGAGCTGCTCGTGAACGC
CCAGCGAGAGTCCCGAGATGCCGACATCTTCCGCAGAGTAGTAGACCGCA
TCAAGGTGTGCGTGGAGGAGGCCACTGCCCCCGCAACAGCCGCTGCGGCC
GCCACTGCCGCAAACGATGGATCGACCGCTGCTAGCCGGCCGGGATCCCC
TACTGAGCTTCCCCCCGCGGCGCCCGCCGACCTTGGTAACAAGAAGAAGA
AGAAGATGAGAAAAAAGGACAAGGGTAGTGGCGGCGGGGCTGGCAATGGA
CCGGCAGGGATGGGGGCAAGCGAGGCGCACTGCAACTGGGCGTTGGCCCA
CGCTGCTTGCCGGGTGTGTAGGGTGGTGGGCCGCACCTTCCAGGTGGCGA
TTAGTTACCAGACGATGCAAAACCAAAATCGGGTCGGTGTCGACGGCGGC
AGTGGCGGTAGCAGCACCGTCTTGGCAAGCCCGGCGGCGACATCAAGCGT
CGGCGGAGAGCGTCGCGGCAGTGGGACCTCCGGCCCGCGTCCCCCGTCCG
TCAACGCCCGCCACGGCTTCTCGGAAGGTCTGCTCGCGTTGGGGGGAGAC
GGCAGCCAACCGGTAACACCGGAAGTGGGGACGGGGTCGGCGTTCAATCT
TCTTGGCCTGCCGCCGTCGCCGGCCCCGAGGTCGGCGATAACGAGAGCCC
CCTCAGCTTGGGGCCCCACTGCGGGGGGGGGGGGG
back to top