mRNA_Ecto-sp13_S_contig1981.6421.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1981.6421.1
Unique NamemRNA_Ecto-sp13_S_contig1981.6421.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1981.6421.1 vs. uniprot
Match: D8LE96_ECTSI (Ubiquitin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE96_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.460e-10
Identity = 37/69 (53.62%), Postives = 42/69 (60.87%), Query Frame = 3 
Query:  144 GGALDASHNLRLQLGKGLISLRQPLPEPDVWGIQPAXXXXXYATWV------YSWHVNSCLQQLLMVEP 332
            GGA D SHNLRL L KGLI LRQ L +PDVWG  P+         V       + +VNSCLQQL M+EP
Sbjct: 2362 GGAFDVSHNLRLLLEKGLIPLRQLLSKPDVWGYSPSLGERSTVGRVGLRNLGNTCYVNSCLQQLFMMEP 2430
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1981.6421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE96_ECTSI2.460e-1053.62Ubiquitin domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1981contigEcto-sp13_S_contig1981:7605..9622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size448
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_000030.1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462999.8450372-CDS-Ecto-sp13_S_contig1981:7604..76571681462999.8450372-CDS-Ecto-sp13_S_contig1981:7604..7657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1981 7605..7657 -
1681462999.855531-CDS-Ecto-sp13_S_contig1981:8691..88411681462999.855531-CDS-Ecto-sp13_S_contig1981:8691..8841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1981 8692..8841 -
1681462999.8678594-CDS-Ecto-sp13_S_contig1981:9377..95191681462999.8678594-CDS-Ecto-sp13_S_contig1981:9377..9519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1981 9378..9519 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462999.8771737-UTR-Ecto-sp13_S_contig1981:9519..96221681462999.8771737-UTR-Ecto-sp13_S_contig1981:9519..9622Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1981 9520..9622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1981.6421.1prot_Ecto-sp13_S_contig1981.6421.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1981 7605..9519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1981.6421.1

>prot_Ecto-sp13_S_contig1981.6421.1 ID=prot_Ecto-sp13_S_contig1981.6421.1|Name=mRNA_Ecto-sp13_S_contig1981.6421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MVVMMVAGRRREWRRCSRCVAQPPVAAGKGAHLSAAAPARAGRLGNTARA
GRVGLRNLGLLMARQLVPAAAVDGGALLRKGILNLGERRGGGHRTPDGFG
PPLAPSFERSTMLMA
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mRNA from alignment at Ecto-sp13_S_contig1981:7605..9622-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1981.6421.1 ID=mRNA_Ecto-sp13_S_contig1981.6421.1|Name=mRNA_Ecto-sp13_S_contig1981.6421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2018bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1981:7605..9622- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTTTCCTCTTCACACCGCCTACGCCGGCCAACCCGACCCAAACGCA
AGATTGGGCCATCCGCCAGCCGCACTTCGTGTCGCCCCCTGAAGGCGGGC
AGGATGGTGGTGATGATGGTAGCGGGTCGACGGAGGGAGTGGCGGCGGTG
CTCTCGATGCGTCGCACAACCTCCGGTTGCAGCTGGGAAAGGGGCTCATC
TCTCTGCGGCAGCCCCTGCCCGAGCCGGACGTCTGGGGAATACAGGTGAG
GGCTCGCGAGGCGTGACACTTCTGTAGCAGGCAGGCATCTTAAGCATACG
TCGTCCTGTTTTTTTTTATCAGTGGTTGAGTGAGATGTTGTGCTCGTATG
GTTCTCGTGAGTCAGCTTCCGAATAGAGCGATGGACTTCGTATTTCGTAT
TTTTTTTTTTTCCCAACTGTACCACTTTTCTTGTCTTTCTTGGTGAGTGG
TAGGCGTTTGCCCTGTTGAGTTCTTGGTTAATGTCGGTTTGTGGGTGGGT
TGTGATCACAGAAATAGATTCGTGTCCCTGAGGAGCGAATACGATAGAAC
ACGTGAGAACTGCATGATGGTTTTTTTCCAACCGACGGCGCGGCCGTGCC
TGATAGAACCCTTCAGCCTCTCTATACAAATTTATTTGGAGATATCCACC
ATCGATGCCTCCGCGTTAAGTGTTAAGGGCTGTACATCACGAAACCGTCG
TCGATGCAATAGGCCTTGACGCAGCCTCCCTTTTGCCCCTCCCCTCCTTT
TTCGCACGCACAACCGGTGCTGCCTTTCCAGCCCGCGCCGGACGTGTGGG
GCTACGCAACTTGGGTCTACTCATGGCACGTCAACTCGTGCCTGCAGCAG
CTGTTGATGGTGGAGCCCTCTTGAGAAAAGGAATCCTGAACCTCGGGGAG
AGGAGGGGAGGGGGGCACAGAACGCCGGACGGTGCGCGGCTGGAAAGAAT
AATTGCCTATGGTTGCGGGCCGTGCTCGTTGGTTGGTCGAGTTGATGTGT
GCCTGAAGTAGCCAAGTTGTACTCGCATATTGGTCCCGCTTGTGGGCCGT
GATCTCGTTTAGTTTTCGAATCGATTTTGGGGCTAGCCCATTGTAGACAC
AACGGGTAATCCCGCTGCAGCTGTTCGTGACGTGGAAGCATCGTTTGCTT
GGCATTGCATTATGTGTCGGCCTCATTGGATGGTCGGCGTGTCGGTCTCC
ATGTTTTCGGTCAGATGGCTTCGAAAACCGCGTCATTCTTCAGGCATAGT
CGTTGGTCGGGAGTCAACACCCCGCAACTCGCCAGGCGCCGACGTCGGGC
GACATTATGCTAATGACTCACCCGCTCGTGCAAGGCTGAAATTGTCAAAA
GTGAACACCGGTGACGGCTTGGTTCTCTTGCCCTGAAGCTTGAACCGTAC
GCCTGATCTTCCTCCTTTGACTGCGGGTTGCAGCTCAGGTGAACCGCATC
ACCGGCTCTCGCCGTCGTCAACAACGGTCTAGGTGTCCAGCTTCGTTGGG
GGAGTTGCAGAAACTTTAGGAGTGGTCCGACGATCAGCGAAACACAGGTA
CAGGAGTGTAGGTGTGGGTGTGGCAAAACACGACAGAAACATACATACCG
AAGGCGATAGCGTCAGCTGGTGTTGAGCGTCCGTTTTCTGGCTGAACCTT
GCGCATTTCGCGTTTACGAACGTGTTGGCGGAACCACGTCGCCCGCCCTG
TCCTGGATAGATTTCGACGGGAGACGCAGTGAAGCCTGATTCTTCTTGTC
GTGCGTGATATTTCGTGTTGCGTTCAAGGTCACTTGCAGGTGGTGTGTTG
TTTTTCGTTTGGTGGGTCTTGACTGAAGCGGCATGTCTGTCTGTTCTTGC
TGACCTGTATTTACCGCAGCAACTCTGTGAAAGCCTCGAAATCCTCGCTG
AAGATGAAATCAGGGACCCTGACTTATGATGGTGCGATGGATCGTCGCTT
TTTGCTCCGACCCAGGCTTTGGACCTCCTCTCGCTCCTTCATTCGAACGG
TCAACGATGTTGATGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1981:7605..9622-

>mRNA_Ecto-sp13_S_contig1981.6421.1 ID=mRNA_Ecto-sp13_S_contig1981.6421.1|Name=mRNA_Ecto-sp13_S_contig1981.6421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1981:7605..9622- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGTGATGATGGTAGCGGGTCGACGGAGGGAGTGGCGGCGGTGCTC
TCGATGCGTCGCACAACCTCCGGTTGCAGCTGGGAAAGGGGCTCATCTCT
CTGCGGCAGCCCCTGCCCGAGCCGGACGTCTGGGGAATACAGCCCGCGCC
GGACGTGTGGGGCTACGCAACTTGGGTCTACTCATGGCACGTCAACTCGT
GCCTGCAGCAGCTGTTGATGGTGGAGCCCTCTTGAGAAAAGGAATCCTGA
ACCTCGGGGAGAGGAGGGGAGGGGGGCACAGAACGCCGGACGGCTTTGGA
CCTCCTCTCGCTCCTTCATTCGAACGGTCAACGATGTTGATGGCA
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