mRNA_Ecto-sp13_S_contig19780.6401.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19780.6401.1
Unique NamemRNA_Ecto-sp13_S_contig19780.6401.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19780.6401.1 vs. uniprot
Match: A0A6H5KTE9_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE9_9PHAE)

HSP 1 Score: 568 bits (1465), Expect = 2.530e-197
Identity = 310/349 (88.83%), Postives = 322/349 (92.26%), Query Frame = 1 
Query:    1 EPIEDEMMVNISRGNVDPVTGEAVTAETFPASRAAGARRAETHQPRPSCSGQRRSIAHSDRPRSATMPTTTPSGSKNKRNESRGARPSTQQGQRQGRDWRGREAQASAGKRGGSGGGGLLKDMFERARSRAEEEKENFFSQQKTRYTAPGLQDVSEIVLACGSGPTPGRRGRVADSSSTPTAAPNPFARKPGASAAARVGAASFHTPDALTAVDTRLRGYADALRPTVYGGGDPDAWSRLSKGCLTACARKDGGEDTCSATRGAAHAVGEGHKDCGARRAAATPSGAVSAAADFAGVTPAAPKRPLSRGVSGSSRGKKAKLGVGGKVGSPRKGATMLSFFGRAAAVSKR 1047
            EPIEDEMMVNISRGNVDPVTGEAVTAETFPAS AAG RRAETHQPRPSCSGQRRSIA SDRPRSAT+ TTTPSGS+N+R+ESRGARPSTQQGQ+QGRDWRGREAQASAGKRGGSGGG LLK+MFERARSRAEEE+ENF SQQKTRY+APGLQDVSEIVLACGSGPTPGRRGRVADSSSTPTAAPNPFARKPG SAAAR GAASFHTPDALTA DTR RG   ALRPT YGGGDPDAWSRLSKGCLTACA+K+ GEDT SATRGAAHAVGE  KDCGARRAA  PSGA SAAA+FAG+TP APKRPLSRG SGS RGKKAKLGVG K G PRKGATMLSFFGRAAAVSKR
Sbjct:  359 EPIEDEMMVNISRGNVDPVTGEAVTAETFPASGAAGFRRAETHQPRPSCSGQRRSIAPSDRPRSATVRTTTPSGSQNQRSESRGARPSTQQGQKQGRDWRGREAQASAGKRGGSGGGRLLKEMFERARSRAEEEEENFSSQQKTRYSAPGLQDVSEIVLACGSGPTPGRRGRVADSSSTPTAAPNPFARKPGGSAAARAGAASFHTPDALTAADTRFRGDGVALRPTAYGGGDPDAWSRLSKGCLTACAQKERGEDTFSATRGAAHAVGESLKDCGARRAAVAPSGAASAAAEFAGITPVAPKRPLSRGGSGSGRGKKAKLGVGCKAGPPRKGATMLSFFGRAAAVSKR 707
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19780.6401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTE9_9PHAE2.530e-19788.83Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19780contigEcto-sp13_S_contig19780:103..1152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1050
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionXPG-I domain
Ec32 orthologEc-06_001490.1
Cds size1032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.5722973-UTR-Ecto-sp13_S_contig19780:102..1201681462998.5722973-UTR-Ecto-sp13_S_contig19780:102..120Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19780 103..120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.5842893-CDS-Ecto-sp13_S_contig19780:120..11521681462998.5842893-CDS-Ecto-sp13_S_contig19780:120..1152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19780 121..1152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19780.6401.1prot_Ecto-sp13_S_contig19780.6401.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19780 121..1152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19780.6401.1

>prot_Ecto-sp13_S_contig19780.6401.1 ID=prot_Ecto-sp13_S_contig19780.6401.1|Name=mRNA_Ecto-sp13_S_contig19780.6401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp
MMVNISRGNVDPVTGEAVTAETFPASRAAGARRAETHQPRPSCSGQRRSI
AHSDRPRSATMPTTTPSGSKNKRNESRGARPSTQQGQRQGRDWRGREAQA
SAGKRGGSGGGGLLKDMFERARSRAEEEKENFFSQQKTRYTAPGLQDVSE
IVLACGSGPTPGRRGRVADSSSTPTAAPNPFARKPGASAAARVGAASFHT
PDALTAVDTRLRGYADALRPTVYGGGDPDAWSRLSKGCLTACARKDGGED
TCSATRGAAHAVGEGHKDCGARRAAATPSGAVSAAADFAGVTPAAPKRPL
SRGVSGSSRGKKAKLGVGGKVGSPRKGATMLSFFGRAAAVSKR*
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mRNA from alignment at Ecto-sp13_S_contig19780:103..1152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19780.6401.1 ID=mRNA_Ecto-sp13_S_contig19780.6401.1|Name=mRNA_Ecto-sp13_S_contig19780.6401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19780:103..1152+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCCCATCGAGGACGAGATGATGGTGAACATCTCCCGCGGCAACGTAGA
CCCGGTCACGGGAGAGGCCGTCACAGCCGAAACGTTTCCCGCTTCGAGGG
CGGCGGGGGCTCGGCGTGCCGAAACGCATCAGCCCCGTCCCAGCTGTAGC
GGCCAGCGGCGGAGCATCGCACATTCTGACCGCCCGCGGAGCGCCACCAT
GCCGACAACCACACCGAGTGGGTCGAAAAACAAGCGAAATGAGTCGCGGG
GGGCGCGTCCTTCTACCCAGCAGGGGCAGAGACAGGGTCGGGATTGGAGG
GGCCGCGAAGCCCAGGCTTCGGCAGGCAAGCGCGGTGGTAGTGGAGGTGG
CGGACTGCTAAAGGACATGTTCGAGCGAGCGAGATCGAGGGCGGAAGAGG
AGAAGGAAAACTTCTTCTCGCAGCAGAAGACGCGGTATACGGCGCCGGGC
TTGCAAGACGTCTCGGAAATCGTTCTCGCCTGCGGATCCGGACCAACGCC
AGGGCGCCGCGGAAGGGTTGCTGATAGCTCTTCGACGCCCACTGCAGCCC
CCAACCCGTTCGCGAGAAAACCGGGGGCTTCGGCCGCGGCACGTGTGGGG
GCCGCTAGTTTCCACACACCCGACGCGCTTACGGCTGTCGATACCCGGTT
GAGAGGTTATGCCGACGCCCTGCGTCCAACGGTGTATGGGGGAGGAGATC
CGGACGCGTGGTCTCGGTTGAGCAAGGGATGCCTGACGGCTTGCGCCCGG
AAGGATGGGGGAGAGGATACTTGTAGCGCAACTAGGGGCGCCGCCCACGC
GGTGGGAGAAGGTCACAAGGATTGTGGAGCGCGCCGGGCGGCAGCGACCC
CAAGCGGGGCGGTGTCTGCCGCGGCCGATTTCGCCGGGGTCACACCCGCC
GCCCCTAAGCGCCCGCTTTCGCGTGGCGTAAGCGGTAGCAGTCGAGGGAA
GAAGGCAAAGCTAGGGGTAGGAGGTAAGGTTGGGTCACCTAGAAAAGGAG
CGACGATGCTGTCGTTCTTTGGCCGCGCCGCTGCGGTGTCCAAGCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19780:103..1152+

>mRNA_Ecto-sp13_S_contig19780.6401.1 ID=mRNA_Ecto-sp13_S_contig19780.6401.1|Name=mRNA_Ecto-sp13_S_contig19780.6401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19780:103..1152+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGTGAACATCTCCCGCGGCAACGTAGACCCGGTCACGGGAGAGGC
CGTCACAGCCGAAACGTTTCCCGCTTCGAGGGCGGCGGGGGCTCGGCGTG
CCGAAACGCATCAGCCCCGTCCCAGCTGTAGCGGCCAGCGGCGGAGCATC
GCACATTCTGACCGCCCGCGGAGCGCCACCATGCCGACAACCACACCGAG
TGGGTCGAAAAACAAGCGAAATGAGTCGCGGGGGGCGCGTCCTTCTACCC
AGCAGGGGCAGAGACAGGGTCGGGATTGGAGGGGCCGCGAAGCCCAGGCT
TCGGCAGGCAAGCGCGGTGGTAGTGGAGGTGGCGGACTGCTAAAGGACAT
GTTCGAGCGAGCGAGATCGAGGGCGGAAGAGGAGAAGGAAAACTTCTTCT
CGCAGCAGAAGACGCGGTATACGGCGCCGGGCTTGCAAGACGTCTCGGAA
ATCGTTCTCGCCTGCGGATCCGGACCAACGCCAGGGCGCCGCGGAAGGGT
TGCTGATAGCTCTTCGACGCCCACTGCAGCCCCCAACCCGTTCGCGAGAA
AACCGGGGGCTTCGGCCGCGGCACGTGTGGGGGCCGCTAGTTTCCACACA
CCCGACGCGCTTACGGCTGTCGATACCCGGTTGAGAGGTTATGCCGACGC
CCTGCGTCCAACGGTGTATGGGGGAGGAGATCCGGACGCGTGGTCTCGGT
TGAGCAAGGGATGCCTGACGGCTTGCGCCCGGAAGGATGGGGGAGAGGAT
ACTTGTAGCGCAACTAGGGGCGCCGCCCACGCGGTGGGAGAAGGTCACAA
GGATTGTGGAGCGCGCCGGGCGGCAGCGACCCCAAGCGGGGCGGTGTCTG
CCGCGGCCGATTTCGCCGGGGTCACACCCGCCGCCCCTAAGCGCCCGCTT
TCGCGTGGCGTAAGCGGTAGCAGTCGAGGGAAGAAGGCAAAGCTAGGGGT
AGGAGGTAAGGTTGGGTCACCTAGAAAAGGAGCGACGATGCTGTCGTTCT
TTGGCCGCGCCGCTGCGGTGTCCAAGCGCTGA
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